Rorug01G0407200

deSI-like protein

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
rosa_rugosa
GWHBQTZ00000001
OG0013336
Physical Location & Seq
Forward (+)
51364880 .. 51366436
1557 bp
Loading structure...
UTR
Exon/CDS
Intron
Rorug01G0407200.1

Sequence Viewer

Length: 717 bp
ATGGCGTCGTCGCTGGGCATTCACTGCGGAGGCACCCGATATGTCGGTCGACGTCAAGATCAGAATAACCTGTGCAGTTCTTCTGACTACGCTCCTCGGCGGTGTTCTTGTTCCGTCGCGGTCCCTTCTCCGAGGAATCGCTGCAGGGGCAAAATCGTAAATTCGTCTTGTGTGGCGGTGGCGGAAACGAAGAGGAGCGTGGGGCGGGAAAGGAGCGGGAGCGGGACGGCGTCGGCGTACGAGAAGGTGGACGAGTGGATGAGGGATTCGGTGACGGAGATCGTCAAGAACCTAAGGGAGGCGCCGCTGCTGGTCCACGTGTACGGTCGGGAAGAGAAGCGGAGGATGGAGACGGAGAAGAAAGTGGAGGAGGAGAATTGGGACGCGCTGAAGGGGAAGTGGGAGGCCGGAGAGGCGCCGTTGCCGGAAGGCGTTATATTCGTGGAGGAGCTCATGGACGACGGCGAAGTTGACGGCAAAGAAGATTCCGGTATCGATGGGATAACGCGGGCGTGGGGGTTGGTGGTGCAGGGCAAAGGGCAGGAGTGTGGGCCAGCTTGTTATTTGTTGAAGACGAGTAGAGTTAATGTCGGGTCGGGTTATGGGCTGGGGATGGGGATGGGCTGCACTCATTTTTGTTTGGTCCGGGTCAAGAGTTTTAGGGAGACGGCCCAGTCGCAGCTCAAGAACAGTTGGTTGTTGCAGGCACAGATGTAA
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
No ontology terms assigned.
KEGG Pathways
Metabolic & Signaling
No pathways identified.
Pfam Domains
Protein Families
Peptidase_C97

Protein Analysis

238

Amino Acids

26.22

Weight (kDa)

8.01

Isoelectric Point (pI)

50.76

Instability Index
Protein Domains (Pfam)
Domain Name Pfam ID Position E-value Description
DUF7804 PF25089 79 - 156 8.3e-32 Domain of unknown function (DUF7804)
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
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Publication-ready
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Orthologous Genes (Group: OG0013336)

Species Orthologous Gene IDs
arabidopsis_thaliana AT4G25660 AT4G25680
fragaria_vesca FvH4_7g30180
malus_domestica MD01G1207800.v1.1 MD07G1278400.v1.1
prunus_persica Prupe.2G300300_v2.0.a1
pyrus_communis pycom01g21860 pycom07g25340
rosa_chinensis RchiOBHm_Chr1g0378231
rosa_laevigata RLG00000026458
rosa_multiflora Rmu_sc0038642.1_g000003
rosa_roxburghii Rroxscaffold_4G00280630
rosa_rugosa Rorug01G0407200
rosa_samantha Rh1AG422500 Rh1BG386600 Rh1CG400200 Rh1DG417800
rosa_wichuraiana Rw1G037490

Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AasI GACNNNNNNGTC 1 cut(s) 673
AatII GACGTC 1 cut(s) 55
AccB1I GGYRCC 3 cut(s) 32, 301, 415
AccBSI CCGCTC 2 cut(s) 216, 222
AccI GTMKAC 1 cut(s) 49
AccII CGCG 3 cut(s) 119, 386, 508
AcsI RAATTY 1 cut(s) 160
AcuI CTGAAG 1 cut(s) 410
AcvI CACGTG 1 cut(s) 319
AcyI GRCGYC 5 cut(s) 5, 52, 230, 302, 416
AfaI GTAC 2 cut(s) 239, 323
AfiI CCNNNNNNNGG 1 cut(s) 298
AflIII ACRYGT 1 cut(s) 318
AgsI TTSAA 1 cut(s) 571
AluBI AGCT 3 cut(s) 451, 557, 682
AluI AGCT 3 cut(s) 451, 557, 682
Alw21I GWGCWC 1 cut(s) 453
Alw26I GTCTC 2 cut(s) 344, 659
AoxI GGCC 3 cut(s) 405, 551, 669
ApeKI GCWGC 4 cut(s) 141, 307, 624, 679
ApoI RAATTY 1 cut(s) 160
AspLEI GCGC 3 cut(s) 304, 388, 418
AspS9I GGNCC 5 cut(s) 121, 313, 551, 643, 670
AsuC2I CCSGG 1 cut(s) 647
AsuHPI GGTGA 1 cut(s) 283
AvaII GGWCC 3 cut(s) 121, 313, 643
AxyI CCTNAGG 1 cut(s) 293
BanI GGYRCC 3 cut(s) 32, 301, 415
BanII GRGCYC 1 cut(s) 453
BbrPI CACGTG 1 cut(s) 319
BbsI GAAGAC 1 cut(s) 578
Bbv12I GWGCWC 1 cut(s) 453
BbvI GCAGC 4 cut(s) 128, 294, 611, 691
BccI CCATC 4 cut(s) 340, 491, 607, 613
BceAI ACGGC 5 cut(s) 243, 403, 478, 490, 684
BcnI CCSGG 1 cut(s) 647
BcoDI GTCTC 2 cut(s) 344, 659
BfmI CTRYAG 1 cut(s) 142
BfoI RGCGCY 2 cut(s) 305, 419
BglI GCCNNNNNGGC 1 cut(s) 413
BisI GCNGC 5 cut(s) 142, 305, 308, 625, 680
BlsI GCNGC 5 cut(s) 143, 306, 309, 626, 681
Bme1390I CCNGG 1 cut(s) 647
Bme18I GGWCC 3 cut(s) 121, 313, 643
BmgT120I GGNCC 5 cut(s) 121, 313, 551, 643, 670
BmiI GGNNCC 4 cut(s) 34, 123, 303, 417
BmrFI CCNGG 1 cut(s) 647
BmrI ACTGGG 1 cut(s) 667
BmuI ACTGGG 1 cut(s) 667
BpiI GAAGAC 1 cut(s) 578
BpuEI CTTGAG 1 cut(s) 668
BpuMI CCSGG 1 cut(s) 647
Bsa29I ATCGAT 1 cut(s) 495
BsaAI YACGTR 1 cut(s) 319
BsaHI GRCGYC 5 cut(s) 5, 52, 230, 302, 416
BsaJI CCNNGG 2 cut(s) 95, 131
BsaWI WCCGGW 1 cut(s) 488
Bsc4I CCNNNNNNNGG 1 cut(s) 298
Bse1I ACTGG 1 cut(s) 673
Bse21I CCTNAGG 1 cut(s) 293
BseCI ATCGAT 1 cut(s) 495
BseDI CCNNGG 2 cut(s) 95, 131
BseGI GGATG 4 cut(s) 264, 351, 618, 624
BseLI CCNNNNNNNGG 1 cut(s) 298
BseNI ACTGG 1 cut(s) 673
BseRI GAGGAG 5 cut(s) 84, 208, 383, 386, 461
BseXI GCAGC 4 cut(s) 128, 294, 611, 691
BseYI CCCAGC 2 cut(s) 13, 607
BsgI GTGCAG 3 cut(s) 94, 548, 610
Bsh1236I CGCG 3 cut(s) 119, 386, 508
Bsh1285I CGRYCG 2 cut(s) 49, 328
BshFI GGCC 3 cut(s) 407, 553, 671
BshNI GGYRCC 3 cut(s) 32, 301, 415
BshVI ATCGAT 1 cut(s) 495
BsiEI CGRYCG 2 cut(s) 49, 328
BsiHKAI GWGCWC 1 cut(s) 453
BsiSI CCGG 4 cut(s) 408, 425, 489, 646
BsiWI CGTACG 1 cut(s) 237
BslFI GGGAC 3 cut(s) 107, 238, 395
BslI CCNNNNNNNGG 1 cut(s) 298
BsmAI GTCTC 2 cut(s) 344, 659
BsmBI CGTCTC 2 cut(s) 344, 659
BsmFI GGGAC 3 cut(s) 107, 238, 395
BsmI GAATGC 1 cut(s) 18
BsnI GGCC 3 cut(s) 407, 553, 671
Bsp1286I GDGCHC 1 cut(s) 453
Bsp143I GATC 2 cut(s) 58, 279
BspANI GGCC 3 cut(s) 407, 553, 671
BspDI ATCGAT 1 cut(s) 495
BspFNI CGCG 3 cut(s) 119, 386, 508
BspLI GGNNCC 4 cut(s) 34, 123, 303, 417
BspMAI CTGCAG 1 cut(s) 146
BspT107I GGYRCC 3 cut(s) 32, 301, 415
BsrBI CCGCTC 2 cut(s) 216, 222
BsrI ACTGG 1 cut(s) 673
BssECI CCNNGG 2 cut(s) 95, 131
BssMI GATC 2 cut(s) 58, 279
BssNI GRCGYC 5 cut(s) 5, 52, 230, 302, 416
Bst4CI ACNGT 2 cut(s) 326, 692
Bst6I CTCTTC 2 cut(s) 185, 327
BstACI GRCGYC 5 cut(s) 5, 52, 230, 302, 416
BstAPI GCANNNNNTGC 1 cut(s) 24
BstBAI YACGTR 1 cut(s) 319
BstC8I GCNNGC 3 cut(s) 510, 555, 705
BstDEI CTNAG 1 cut(s) 293
BstENI CCTNNNNNAGG 1 cut(s) 296
BstF5I GGATG 4 cut(s) 264, 351, 618, 624
BstFNI CGCG 3 cut(s) 119, 386, 508
BstH2I RGCGCY 2 cut(s) 305, 419
BstHHI GCGC 3 cut(s) 304, 388, 418
BstKTI GATC 2 cut(s) 61, 282
BstMAI GTCTC 2 cut(s) 344, 659
BstMBI GATC 2 cut(s) 58, 279
BstMCI CGRYCG 2 cut(s) 49, 328
BstMWI GCNNNNNNNGC 3 cut(s) 24, 147, 413
BstSCI CCNGG 1 cut(s) 645
BstSFI CTRYAG 1 cut(s) 142
BstUI CGCG 3 cut(s) 119, 386, 508
BstV1I GCAGC 4 cut(s) 128, 294, 611, 691
BstV2I GAAGAC 1 cut(s) 578
Bsu15I ATCGAT 1 cut(s) 495
Bsu36I CCTNAGG 1 cut(s) 293
BsuRI GGCC 3 cut(s) 407, 553, 671
BsuTUI ATCGAT 1 cut(s) 495
BtsCI GGATG 4 cut(s) 264, 351, 618, 624
BtsI GCAGTG 1 cut(s) 22
BtsIMutI CAGTG 1 cut(s) 22
Cac8I GCNNGC 3 cut(s) 510, 555, 705
CfoI GCGC 3 cut(s) 304, 388, 418
Cfr13I GGNCC 5 cut(s) 121, 313, 551, 643, 670
ClaI ATCGAT 1 cut(s) 495
CseI GACGC 2 cut(s) 219, 392
Csp6I GTAC 2 cut(s) 238, 322
CviAII CATG 1 cut(s) 454
CviJI RGCY 8 cut(s) 407, 451, 553, 557, 607, 624, 671, 682
CviKI_1 RGCY 8 cut(s) 407, 451, 553, 557, 607, 624, 671, 682
CviQI GTAC 2 cut(s) 238, 322
DdeI CTNAG 1 cut(s) 293
DinI GGCGCC 2 cut(s) 303, 417
DpnI GATC 2 cut(s) 60, 281
DpnII GATC 2 cut(s) 58, 279
DrdI GACNNNNNNGTC 1 cut(s) 673
DseDI GACNNNNNNGTC 1 cut(s) 673
Eam1104I CTCTTC 2 cut(s) 185, 327
EarI CTCTTC 2 cut(s) 185, 327
EciI GGCGGA 1 cut(s) 197
Ecl136II GAGCTC 1 cut(s) 451
Eco24I GRGCYC 1 cut(s) 453
Eco47I GGWCC 3 cut(s) 121, 313, 643
Eco53kI GAGCTC 1 cut(s) 451
Eco57I CTGAAG 1 cut(s) 410
Eco72I CACGTG 1 cut(s) 319
Eco81I CCTNAGG 1 cut(s) 293
EcoICRI GAGCTC 1 cut(s) 451
EcoNI CCTNNNNNAGG 1 cut(s) 296
EcoT38I GRGCYC 1 cut(s) 453
EgeI GGCGCC 2 cut(s) 303, 417
EheI GGCGCC 2 cut(s) 303, 417
Esp3I CGTCTC 2 cut(s) 344, 659
FaeI CATG 1 cut(s) 457
FaiI YATR 4 cut(s) 42, 437, 455, 603
FaqI GGGAC 3 cut(s) 107, 238, 395
FatI CATG 1 cut(s) 453
FauI CCCGC 4 cut(s) 198, 209, 215, 501
FblI GTMKAC 1 cut(s) 49
Fnu4HI GCNGC 5 cut(s) 142, 305, 308, 625, 680
FokI GGATG 4 cut(s) 271, 358, 625, 631
FriOI GRGCYC 1 cut(s) 453
Fsp4HI GCNGC 5 cut(s) 142, 305, 308, 625, 680
GlaI GCGC 3 cut(s) 303, 387, 417
GluI GCNGC 5 cut(s) 142, 305, 308, 625, 680
GsaI CCCAGC 2 cut(s) 17, 611
HaeII RGCGCY 2 cut(s) 305, 419
HaeIII GGCC 3 cut(s) 407, 553, 671
HapII CCGG 4 cut(s) 408, 425, 489, 646
HgaI GACGC 2 cut(s) 219, 392
HhaI GCGC 3 cut(s) 304, 388, 418
Hin1I GRCGYC 5 cut(s) 5, 52, 230, 302, 416
Hin1II CATG 1 cut(s) 457
Hin6I GCGC 3 cut(s) 302, 386, 416
HinP1I GCGC 3 cut(s) 302, 386, 416
HincII GTYRAC 2 cut(s) 50, 472
HindII GTYRAC 2 cut(s) 50, 472
HinfI GANTC 3 cut(s) 136, 266, 485
HpaII CCGG 4 cut(s) 408, 425, 489, 646
HphI GGTGA 1 cut(s) 283
Hpy166II GTNNAC 5 cut(s) 50, 250, 316, 322, 472
Hpy188I TCNGA 3 cut(s) 63, 85, 132
Hpy188III TCNNGA 5 cut(s) 56, 286, 329, 652, 685
Hpy8I GTNNAC 5 cut(s) 50, 250, 316, 322, 472
Hpy99I CGWCG 6 cut(s) 10, 13, 54, 119, 235, 464
HpyAV CCTTC 4 cut(s) 135, 238, 385, 422
HpyCH4III ACNGT 2 cut(s) 326, 692
HpyCH4IV ACGT 2 cut(s) 52, 318
HpyCH4V TGCA 5 cut(s) 75, 144, 529, 627, 703
HpyF10VI GCNNNNNNNGC 3 cut(s) 24, 147, 413
HpyF3I CTNAG 1 cut(s) 293
HpySE526I ACGT 2 cut(s) 52, 318
Hsp92I GRCGYC 5 cut(s) 5, 52, 230, 302, 416
Hsp92II CATG 1 cut(s) 457
HspAI GCGC 3 cut(s) 302, 386, 416
KasI GGCGCC 2 cut(s) 301, 415
Kzo9I GATC 2 cut(s) 58, 279
LmnI GCTCC 5 cut(s) 97, 195, 213, 219, 448
Lsp1109I GCAGC 4 cut(s) 128, 294, 611, 691
MaeII ACGT 2 cut(s) 52, 318
MaeIII GTNAC 1 cut(s) 271
MalI GATC 2 cut(s) 60, 281
MbiI CCGCTC 2 cut(s) 216, 222
MboI GATC 2 cut(s) 58, 279
MboII GAAGA 6 cut(s) 72, 202, 344, 370, 494, 583
MhlI GDGCHC 1 cut(s) 453
MluCI AATT 2 cut(s) 160, 376
Mly113I GGCGCC 2 cut(s) 302, 416
MseI TTAA 1 cut(s) 585
MspA1I CMGCKG 1 cut(s) 307
MspI CCGG 4 cut(s) 408, 425, 489, 646
MspR9I CCNGG 1 cut(s) 647
Mva1269I GAATGC 1 cut(s) 18
MvnI CGCG 3 cut(s) 119, 386, 508
MwoI GCNNNNNNNGC 3 cut(s) 24, 147, 413
NarI GGCGCC 2 cut(s) 302, 416
NciI CCSGG 1 cut(s) 647
NdeII GATC 2 cut(s) 58, 279
NlaIII CATG 1 cut(s) 457
NlaIV GGNNCC 4 cut(s) 34, 123, 303, 417
NmeAIII GCCGAG 1 cut(s) 76
NmuCI GTSAC 1 cut(s) 271
PcsI WCGNNNNNNNCGW 1 cut(s) 233
PctI GAATGC 1 cut(s) 18
PfeI GAWTC 3 cut(s) 136, 266, 485
Pfl23II CGTACG 1 cut(s) 237
PflFI GACNNNGTC 1 cut(s) 229
PkrI GCNGC 5 cut(s) 143, 306, 309, 626, 681
PluTI GGCGCC 2 cut(s) 305, 419
PmaCI CACGTG 1 cut(s) 319
PmlI CACGTG 1 cut(s) 319
Ppu21I YACGTR 1 cut(s) 319
Psp124BI GAGCTC 1 cut(s) 453
PspCI CACGTG 1 cut(s) 319
PspFI CCCAGC 2 cut(s) 13, 607
PspLI CGTACG 1 cut(s) 237
PspN4I GGNNCC 4 cut(s) 34, 123, 303, 417
PspPI GGNCC 5 cut(s) 121, 313, 551, 643, 670
PstI CTGCAG 1 cut(s) 146
PsyI GACNNNGTC 1 cut(s) 229
RsaI GTAC 2 cut(s) 239, 323
RsaNI GTAC 2 cut(s) 238, 322
SacI GAGCTC 1 cut(s) 453
SalI GTCGAC 1 cut(s) 48
SaqAI TTAA 1 cut(s) 585
SatI GCNGC 5 cut(s) 142, 305, 308, 625, 680
Sau3AI GATC 2 cut(s) 58, 279
Sau96I GGNCC 5 cut(s) 121, 313, 551, 643, 670
ScrFI CCNGG 1 cut(s) 647
SduI GDGCHC 1 cut(s) 453
SetI ASST 8 cut(s) 55, 72, 249, 294, 321, 453, 559, 684
SfcI CTRYAG 1 cut(s) 142
SfoI GGCGCC 2 cut(s) 303, 417
SinI GGWCC 3 cut(s) 121, 313, 643
SmlI CTYRAG 1 cut(s) 683
SmoI CTYRAG 1 cut(s) 683
Sse9I AATT 2 cut(s) 160, 376
SspDI GGCGCC 2 cut(s) 301, 415
SstI GAGCTC 1 cut(s) 453
StyD4I CCNGG 1 cut(s) 645
TaaI ACNGT 2 cut(s) 326, 692
TaiI ACGT 2 cut(s) 55, 321
TaqI TCGA 2 cut(s) 49, 495
TaqII GACCGA 1 cut(s) 35
TasI AATT 2 cut(s) 160, 376
TauI GCSGC 1 cut(s) 307
TfiI GAWTC 3 cut(s) 136, 266, 485
Tru1I TTAA 1 cut(s) 585
Tru9I TTAA 1 cut(s) 585
TscAI CASTG 1 cut(s) 29
TseFI GTSAC 1 cut(s) 271
TseI GCWGC 4 cut(s) 141, 307, 624, 679
Tsp45I GTSAC 1 cut(s) 271
TspGWI ACGGA 3 cut(s) 103, 290, 368
TspRI CASTG 1 cut(s) 29
Tth111I GACNNNGTC 1 cut(s) 229
VpaK11BI GGWCC 3 cut(s) 121, 313, 643
XagI CCTNNNNNAGG 1 cut(s) 296
XapI RAATTY 1 cut(s) 160
XmiI GTMKAC 1 cut(s) 49
ZraI GACGTC 1 cut(s) 53
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.