AT4G25680

deSI-like protein At4g17486

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
arabidopsis_thaliana
4
OG0013336
Physical Location & Seq
Forward (+)
13087973 .. 13090161
2189 bp
Loading structure...
UTR
Exon/CDS
Intron
AT4G25680.1

Sequence Viewer

Length: 759 bp
ATGACGGAGGTTGTTCTGCATATATACGATGTGACGAACAGTGGATCGGAGAAGACTAACAACACCATTGTTCAGATCAATAGGTTCTTCAAAGACGGGATCGGTCTTGGCGGTATATTCCACAGCGCTATTCAGGTATATGGAAACGATGAATGGTCTTACGGGTATTGTGAACTAGGAACTGGTGTATTCAGCTGCCCGAGTGGAAAGAATCCAATGTACACATACCGTGAGAAAATCGTCCTTGGCAAAACAGATTGCACAATCTTCATGGTGAATCAGATGTTGCGTGAACTCAGCAGGGAATGGCCTGGACACACTTATGATTTGTTGTCAAAAAATTGCAATCACTTCTGCGATGTACTCTGTGACCGGCTTGGTGTGCCAAAGATCCCAGGTTGGGTTAATCGCTTTGCTAATGCTGGGGACACAGCCTTGGAAGTGGCAGGAAACACAGCAATGCGGATGAAGCAAGCCAAAACTGAACTTGTGTCAGCTAGTAAAGTGGCTTATCGCTTCCTCTCGAATGTTACTTCGAACGTAACCAATGGCTCCAATGGCTCTCCACAACGACCGGGAACTCTCAACAATTCAGACAGCGGGAACTTGAGATTGCAAGGTAGTTGGCTCAAAGGCTTACTTAACACAGCCAAACCCTCCACTAGTACAGAGATAGGGAACAAAGATGAAGATGCAAATCATGCAGTCACCAATCAGAAGAAACAAAGCCGTGACTCTGATGTTCTACTGTTTCAGTAG
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
No ontology terms assigned.
KEGG Pathways
Metabolic & Signaling
No pathways identified.
Pfam Domains
Protein Families
Peptidase_C97

Protein Analysis

252

Amino Acids

27.8

Weight (kDa)

8.17

Isoelectric Point (pI)

20.49

Instability Index
Protein Domains (Pfam)
Domain Name Pfam ID Position E-value Description
Peptidase_C97 PF05903 3 - 153 1.3e-44 PPPDE putative peptidase domain
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
Loading...
Style Settings
Image
Tree File
Tip: Beautify your tree with professional tools

Download the Full Tree (.nwk) file, then upload it to any of the following tools to customize colors, fonts, annotations, clades, and branch support.

Publication-ready
iTOL Interactive Tree Of Life · Most popular EvolView Flexible annotations MEGA Desktop phylogenetics suite FigTree Desktop tree editor

Orthologous Genes (Group: OG0013336)

Species Orthologous Gene IDs
arabidopsis_thaliana AT4G25660 AT4G25680
fragaria_vesca FvH4_7g30180
malus_domestica MD01G1207800.v1.1 MD07G1278400.v1.1
prunus_persica Prupe.2G300300_v2.0.a1
pyrus_communis pycom01g21860 pycom07g25340
rosa_chinensis RchiOBHm_Chr1g0378231
rosa_laevigata RLG00000026458
rosa_multiflora Rmu_sc0038642.1_g000003
rosa_roxburghii Rroxscaffold_4G00280630
rosa_rugosa Rorug01G0407200
rosa_samantha Rh1AG422500 Rh1BG386600 Rh1CG400200 Rh1DG417800
rosa_wichuraiana Rw1G037490

Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AciI CCGC 3 cut(s) 111, 463, 600
AclWI GGATC 3 cut(s) 52, 107, 385
AfaI GTAC 3 cut(s) 221, 363, 667
AfeI AGCGCT 1 cut(s) 127
AfiI CCNNNNNNNGG 1 cut(s) 400
AgsI TTSAA 1 cut(s) 91
AhlI ACTAGT 1 cut(s) 662
AjnI CCWGG 2 cut(s) 310, 394
AluBI AGCT 2 cut(s) 195, 497
AluI AGCT 2 cut(s) 195, 497
AlwI GGATC 3 cut(s) 52, 107, 385
Ama87I CYCGRG 1 cut(s) 199
Aor51HI AGCGCT 1 cut(s) 127
AoxI GGCC 1 cut(s) 308
ApeKI GCWGC 1 cut(s) 195
AspLEI GCGC 1 cut(s) 128
AsuC2I CCSGG 1 cut(s) 576
AsuHPI GGTGA 2 cut(s) 286, 700
AsuII TTCGAA 1 cut(s) 536
AvaI CYCGRG 1 cut(s) 199
BbsI GAAGAC 1 cut(s) 59
BbvI GCAGC 1 cut(s) 182
BceAI ACGGC 1 cut(s) 714
BciT130I CCWGG 2 cut(s) 312, 396
BcnI CCSGG 1 cut(s) 576
BcuI ACTAGT 1 cut(s) 662
BfaI CTAG 3 cut(s) 176, 498, 663
BfoI RGCGCY 1 cut(s) 129
BisI GCNGC 1 cut(s) 196
BlsI GCNGC 1 cut(s) 197
Bme1390I CCNGG 3 cut(s) 312, 396, 576
BmeT110I CYCGRG 1 cut(s) 199
BmiI GGNNCC 1 cut(s) 553
BmrFI CCNGG 3 cut(s) 312, 396, 576
BmsI GCATC 1 cut(s) 682
BpiI GAAGAC 1 cut(s) 59
Bpu14I TTCGAA 1 cut(s) 536
BpuEI CTTGAG 1 cut(s) 628
BpuMI CCSGG 1 cut(s) 576
BsaBI GATNNNNATC 1 cut(s) 696
BsaJI CCNNGG 3 cut(s) 244, 394, 435
Bsc4I CCNNNNNNNGG 1 cut(s) 400
Bse118I RCCGGY 1 cut(s) 372
Bse1I ACTGG 1 cut(s) 187
Bse3DI GCAATG 1 cut(s) 465
Bse8I GATNNNNATC 1 cut(s) 696
BseBI CCWGG 2 cut(s) 312, 396
BseDI CCNNGG 3 cut(s) 244, 394, 435
BseGI GGATG 1 cut(s) 471
BseJI GATNNNNATC 1 cut(s) 696
BseLI CCNNNNNNNGG 1 cut(s) 400
BseMI GCAATG 1 cut(s) 465
BseMII CTCAG 1 cut(s) 310
BseNI ACTGG 1 cut(s) 187
BseXI GCAGC 1 cut(s) 182
BseYI CCCAGC 1 cut(s) 422
Bsh1285I CGRYCG 1 cut(s) 575
BshFI GGCC 1 cut(s) 310
BsiEI CGRYCG 1 cut(s) 575
BsiHKCI CYCGRG 1 cut(s) 199
BsiSI CCGG 2 cut(s) 373, 575
BslFI GGGAC 1 cut(s) 440
BslI CCNNNNNNNGG 1 cut(s) 400
BsmFI GGGAC 1 cut(s) 440
BsnI GGCC 1 cut(s) 310
BsoBI CYCGRG 1 cut(s) 199
Bsp119I TTCGAA 1 cut(s) 536
Bsp1407I TGTACA 1 cut(s) 219
Bsp143I GATC 4 cut(s) 44, 75, 99, 390
BspACI CCGC 3 cut(s) 111, 463, 600
BspANI GGCC 1 cut(s) 310
BspCNI CTCAG 1 cut(s) 309
BspLI GGNNCC 1 cut(s) 553
BspPI GGATC 3 cut(s) 52, 107, 385
BspT104I TTCGAA 1 cut(s) 536
BsrDI GCAATG 1 cut(s) 465
BsrFI RCCGGY 1 cut(s) 372
BsrGI TGTACA 1 cut(s) 219
BsrI ACTGG 1 cut(s) 187
BssAI RCCGGY 1 cut(s) 372
BssECI CCNNGG 3 cut(s) 244, 394, 435
BssMI GATC 4 cut(s) 44, 75, 99, 390
BssT1I CCWWGG 2 cut(s) 244, 435
Bst2UI CCWGG 2 cut(s) 312, 396
Bst4CI ACNGT 3 cut(s) 41, 230, 750
BstAPI GCANNNNNTGC 1 cut(s) 701
BstAUI TGTACA 1 cut(s) 219
BstBI TTCGAA 1 cut(s) 536
BstC8I GCNNGC 1 cut(s) 474
BstDEI CTNAG 1 cut(s) 296
BstF5I GGATG 1 cut(s) 471
BstH2I RGCGCY 1 cut(s) 129
BstHHI GCGC 1 cut(s) 128
BstKTI GATC 4 cut(s) 47, 78, 102, 393
BstMBI GATC 4 cut(s) 44, 75, 99, 390
BstMCI CGRYCG 1 cut(s) 575
BstMWI GCNNNNNNNGC 4 cut(s) 382, 469, 558, 701
BstNI CCWGG 2 cut(s) 312, 396
BstSCI CCNGG 3 cut(s) 310, 394, 574
BstV1I GCAGC 1 cut(s) 182
BstV2I GAAGAC 1 cut(s) 59
BstX2I RGATCY 1 cut(s) 390
BstYI RGATCY 1 cut(s) 390
BsuRI GGCC 1 cut(s) 310
BtgZI GCGATG 1 cut(s) 372
BtsCI GGATG 1 cut(s) 471
BtsIMutI CAGTG 1 cut(s) 46
Cac8I GCNNGC 1 cut(s) 474
CfoI GCGC 1 cut(s) 128
Cfr10I RCCGGY 1 cut(s) 372
Csp6I GTAC 3 cut(s) 220, 362, 666
CviAII CATG 2 cut(s) 271, 701
CviQI GTAC 3 cut(s) 220, 362, 666
DdeI CTNAG 1 cut(s) 296
DpnI GATC 4 cut(s) 46, 77, 101, 392
DpnII GATC 4 cut(s) 44, 75, 99, 390
Eco130I CCWWGG 2 cut(s) 244, 435
Eco47III AGCGCT 1 cut(s) 127
Eco88I CYCGRG 1 cut(s) 199
EcoRII CCWGG 2 cut(s) 310, 394
EcoT14I CCWWGG 2 cut(s) 244, 435
ErhI CCWWGG 2 cut(s) 244, 435
FaeI CATG 2 cut(s) 274, 704
FalI AAGNNNNNCTT 2 cut(s) 624, 656
FaqI GGGAC 1 cut(s) 440
FatI CATG 2 cut(s) 270, 700
FauI CCCGC 1 cut(s) 593
Fnu4HI GCNGC 1 cut(s) 196
FokI GGATG 1 cut(s) 478
Fsp4HI GCNGC 1 cut(s) 196
FspBI CTAG 3 cut(s) 176, 498, 663
GlaI GCGC 1 cut(s) 127
GluI GCNGC 1 cut(s) 196
GsaI CCCAGC 1 cut(s) 426
HaeII RGCGCY 1 cut(s) 129
HaeIII GGCC 1 cut(s) 310
HapII CCGG 2 cut(s) 373, 575
HhaI GCGC 1 cut(s) 128
Hin1II CATG 2 cut(s) 274, 704
Hin6I GCGC 1 cut(s) 126
HinP1I GCGC 1 cut(s) 126
HinfI GANTC 3 cut(s) 211, 277, 734
HpaII CCGG 2 cut(s) 373, 575
HphI GGTGA 2 cut(s) 286, 700
Hpy166II GTNNAC 3 cut(s) 173, 222, 293
Hpy188I TCNGA 6 cut(s) 49, 75, 282, 595, 717, 739
Hpy188III TCNNGA 1 cut(s) 523
Hpy8I GTNNAC 3 cut(s) 173, 222, 293
HpyCH4III ACNGT 3 cut(s) 41, 230, 750
HpyCH4IV ACGT 1 cut(s) 540
HpyCH4V TGCA 6 cut(s) 19, 261, 345, 616, 695, 704
HpyF10VI GCNNNNNNNGC 4 cut(s) 382, 469, 558, 701
HpyF3I CTNAG 1 cut(s) 296
HpySE526I ACGT 1 cut(s) 540
Hsp92II CATG 2 cut(s) 274, 704
HspAI GCGC 1 cut(s) 126
Kzo9I GATC 4 cut(s) 44, 75, 99, 390
LmnI GCTCC 1 cut(s) 557
Lsp1109I GCAGC 1 cut(s) 182
LweI GCATC 1 cut(s) 682
MaeI CTAG 3 cut(s) 176, 498, 663
MaeII ACGT 1 cut(s) 540
MaeIII GTNAC 6 cut(s) 31, 368, 529, 541, 706, 731
MalI GATC 4 cut(s) 46, 77, 101, 392
MboI GATC 4 cut(s) 44, 75, 99, 390
MboII GAAGA 5 cut(s) 64, 79, 259, 701, 730
MflI RGATCY 1 cut(s) 390
MluCI AATT 2 cut(s) 340, 589
MlyI GAGTC 1 cut(s) 728
MnlI CCTC 2 cut(s) 530, 667
MseI TTAA 2 cut(s) 405, 642
MslI CAYNNNNRTG 2 cut(s) 321, 458
MspA1I CMGCKG 2 cut(s) 195, 600
MspI CCGG 2 cut(s) 373, 575
MspR9I CCNGG 3 cut(s) 312, 396, 576
MvaI CCWGG 2 cut(s) 312, 396
MwoI GCNNNNNNNGC 4 cut(s) 382, 469, 558, 701
NciI CCSGG 1 cut(s) 576
NdeII GATC 4 cut(s) 44, 75, 99, 390
NlaIII CATG 2 cut(s) 274, 704
NlaIV GGNNCC 1 cut(s) 553
NmuCI GTSAC 4 cut(s) 31, 368, 706, 731
NspV TTCGAA 1 cut(s) 536
PfeI GAWTC 2 cut(s) 211, 277
PkrI GCNGC 1 cut(s) 197
PleI GAGTC 1 cut(s) 728
PpsI GAGTC 1 cut(s) 728
Psp6I CCWGG 2 cut(s) 310, 394
PspFI CCCAGC 1 cut(s) 422
PspGI CCWGG 2 cut(s) 310, 394
PspN4I GGNNCC 1 cut(s) 553
PsuI RGATCY 1 cut(s) 390
PvuII CAGCTG 1 cut(s) 195
RsaI GTAC 3 cut(s) 221, 363, 667
RsaNI GTAC 3 cut(s) 220, 362, 666
RseI CAYNNNNRTG 2 cut(s) 321, 458
SaqAI TTAA 2 cut(s) 405, 642
SatI GCNGC 1 cut(s) 196
Sau3AI GATC 4 cut(s) 44, 75, 99, 390
SchI GAGTC 1 cut(s) 728
ScrFI CCNGG 3 cut(s) 312, 396, 576
SetI ASST 8 cut(s) 12, 86, 138, 197, 400, 499, 543, 622
SfaNI GCATC 1 cut(s) 682
SfuI TTCGAA 1 cut(s) 536
SmiMI CAYNNNNRTG 2 cut(s) 321, 458
SmlI CTYRAG 1 cut(s) 607
SmoI CTYRAG 1 cut(s) 607
SpeI ACTAGT 1 cut(s) 662
Sse9I AATT 2 cut(s) 340, 589
SsiI CCGC 3 cut(s) 111, 463, 600
SspMI CTAG 3 cut(s) 176, 498, 663
StyD4I CCNGG 3 cut(s) 310, 394, 574
StyI CCWWGG 2 cut(s) 244, 435
TaaI ACNGT 3 cut(s) 41, 230, 750
TaiI ACGT 1 cut(s) 543
TaqI TCGA 2 cut(s) 524, 536
TaqII GACCGA 1 cut(s) 92
TasI AATT 2 cut(s) 340, 589
TatI WGTACW 3 cut(s) 219, 361, 665
TfiI GAWTC 2 cut(s) 211, 277
Tru1I TTAA 2 cut(s) 405, 642
Tru9I TTAA 2 cut(s) 405, 642
TscAI CASTG 1 cut(s) 46
TseFI GTSAC 4 cut(s) 31, 368, 706, 731
TseI GCWGC 1 cut(s) 195
Tsp45I GTSAC 4 cut(s) 31, 368, 706, 731
TspDTI ATGAA 4 cut(s) 165, 259, 482, 702
TspGWI ACGGA 1 cut(s) 20
TspRI CASTG 1 cut(s) 46
XspI CTAG 3 cut(s) 176, 498, 663
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.