Basic Information

Type: gene

Biological Identity

Species

arabidopsis_thaliana

Chromosome

Orthogroup ID

OG0004071

Physical Location & Seq

Genomic Coordinates Reverse (-)

13200861 .. 13204057

Gene Structure 3197 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

AT4G26020.2

Sequence Viewer

CDS Protein Promoter (2k)

Length: 744 bp

ATGGCGGCAACAAGCGACGAGCAGATGAATTTGCTTCTCTCCAGTTTCGATCAAATCTACGAGGATTTTAAAATCGGGTTGAATGAGATCAATGTTTACAGATCAAAGAGCAATGTTGAATCAAGCAGGAGAGAGGTTCTTGAGATTAGTAACAAAAATCTCAAAGAAGAGAATGAAAGGCTGAAGAAGCTTTACACCGAATCTCTCAACAATTTTGCTGATCAGCTTGAGCATCGAACTAAGTGTCACAGCTTGAAAGAAGAATTGAAGAGAGTGAATGATGAAAACAAAAGCAAAGAACATGAACATAGGAATGCTTTGGAATCACTTAGGCAGAAGCATGTAACAAAAGTTGAAGAGCTAGAGTATAAAATCAGAAGCCTTTTGGTTGAAAAAGCAACAAACGATATGGTAATTGATAGACTTCGACAAGACTTGACAGCTAACAAATCGCATATTCAAGCAATGTCGAAGAAACTGGATCGAGTAGTTACGGAAGTGGAGTGCAAGTATGAACTCGAGATTCAGGATCTAAAGGACTGCCTTCTAATGGAACAAGCAGAGAAAAATGATATCAGTAACAAACTTCAGAGTCTGCAGAAGGAATTGCTTATTAGTAGAACGTCAATAGCTGAAAAGCAGAGGGATACAACTTCAAATCGACAGGTCGAGACATTGAAACAGAAGCTAATGAAACTGAGAAAAGAGAATGAGATCCTTAAACGGAAATTATCTTCTTCATAG

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0005575 GO:0005622 GO:0005623 GO:0005737 GO:0005783 GO:0005911 GO:0006810 GO:0008150 GO:0009506 GO:0009987 GO:0010496 GO:0012505 GO:0030054 GO:0043226 GO:0043227 GO:0043229 GO:0043231 GO:0044424 GO:0044444 GO:0044464 GO:0046907 GO:0051179 GO:0051234 GO:0051641 GO:0051649 GO:0055044

KEGG Pathways

Metabolic & Signaling

No pathways identified.

Pfam Domains

Protein Families

No domains found.

Protein Analysis

247

Amino Acids

29.14

Weight (kDa)

8.26

Isoelectric Point (pI)

49.55

Instability Index

Protein Domains (Pfam)

No Pfam domains detected for this protein.

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

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Align Labels (Cladogram)

Image

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Publication-ready

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Orthologous Genes (Group: OG0004071)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT4G26020 AT4G26020 AT4G26020
fragaria_vesca	FvH4_4g07070 FvH4_4g07070 FvH4_4g07070 FvH4_4g07070 FvH4_4g07070 FvH4_4g07070 FvH4_4g07070 FvH4_4g07070 FvH4_4g07070 FvH4_4g07070 FvH4_4g07070
malus_domestica	MD16G1247400.v1.1
prunus_persica	Prupe.1G073900_v2.0.a1 Prupe.1G073900_v2.0.a1 Prupe.1G073900_v2.0.a1 Prupe.1G073900_v2.0.a1
pyrus_communis	pycom16g20770
rosa_chinensis	RchiOBHm_Chr4g0399191
rosa_laevigata	RLG00000009291
rosa_multiflora	Rmu_sc0002582.1_g000003 Rmu_sc0024868.1_g000001
rosa_roxburghii	Rroxscaffold_5G00344150
rosa_rugosa	Rorug04G0014800 Rorug04G0014900 Rorug04G0015000
rosa_samantha	Rh4AG092900 Rh4BG090700 Rh4CG101300 Rh4DG085200
rosa_wichuraiana	Rw4G007650

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AciI	CCGC	1 cut(s)	5
AclWI	GGATC	3 cut(s)	489, 537, 709
AcsI	RAATTY	1 cut(s)	28
AcuI	CTGAAG	2 cut(s)	203, 572
AfiI	CCNNNNNNNGG	1 cut(s)	550
AgsI	TTSAA	9 cut(s)	82, 119, 256, 268, 356, 392, 461, 657, 679
AluBI	AGCT	7 cut(s)	190, 226, 252, 361, 443, 632, 688
AluI	AGCT	7 cut(s)	190, 226, 252, 361, 443, 632, 688
Alw26I	GTCTC	1 cut(s)	665
AlwI	GGATC	3 cut(s)	489, 537, 709
AlwNI	CAGNNNCTG	1 cut(s)	595
Ama87I	CYCGRG	1 cut(s)	518
ApoI	RAATTY	1 cut(s)	28
ArsI	GACNNNNNNTTYG	2 cut(s)	229, 261
AvaI	CYCGRG	1 cut(s)	518
BarI	GAAGNNNNNNTAC	2 cut(s)	176, 208
BciVI	GTATCC	1 cut(s)	640
BclI	TGATCA	1 cut(s)	220
BcoDI	GTCTC	1 cut(s)	665
BfaI	CTAG	1 cut(s)	362
BfmI	CTRYAG	1 cut(s)	596
BfuI	GTATCC	1 cut(s)	640
BisI	GCNGC	1 cut(s)	6
BlsI	GCNGC	1 cut(s)	7
BmeT110I	CYCGRG	1 cut(s)	518
BmsI	GCATC	1 cut(s)	241
BpmI	CTGGAG	1 cut(s)	25
BpuEI	CTTGAG	2 cut(s)	161, 248
BsaXI	ACNNNNNCTCC	2 cut(s)	494, 524
Bsc4I	CCNNNNNNNGG	1 cut(s)	550
Bse1I	ACTGG	2 cut(s)	42, 483
Bse3DI	GCAATG	2 cut(s)	118, 471
BseLI	CCNNNNNNNGG	1 cut(s)	550
BseMI	GCAATG	2 cut(s)	118, 471
BseMII	CTCAG	1 cut(s)	689
BseNI	ACTGG	2 cut(s)	42, 483
BsiHKCI	CYCGRG	1 cut(s)	518
BslI	CCNNNNNNNGG	1 cut(s)	550
BsmAI	GTCTC	1 cut(s)	665
BsmI	GAATGC	1 cut(s)	319
BsoBI	CYCGRG	1 cut(s)	518
Bsp143I	GATC	7 cut(s)	49, 87, 101, 220, 481, 529, 714
BspACI	CCGC	1 cut(s)	5
BspCNI	CTCAG	1 cut(s)	690
BspMAI	CTGCAG	1 cut(s)	600
BspPI	GGATC	3 cut(s)	489, 537, 709
BspQI	GCTCTTC	1 cut(s)	351
BsrDI	GCAATG	2 cut(s)	118, 471
BsrI	ACTGG	2 cut(s)	42, 483
BssMI	GATC	7 cut(s)	49, 87, 101, 220, 481, 529, 714
Bst6I	CTCTTC	3 cut(s)	162, 263, 351
BstDEI	CTNAG	3 cut(s)	240, 329, 698
BstKTI	GATC	7 cut(s)	52, 90, 104, 223, 484, 532, 717
BstMAI	GTCTC	1 cut(s)	665
BstMBI	GATC	7 cut(s)	49, 87, 101, 220, 481, 529, 714
BstMWI	GCNNNNNNNGC	1 cut(s)	187
BstNSI	RCATGY	1 cut(s)	344
BstSFI	CTRYAG	1 cut(s)	596
BstX2I	RGATCY	2 cut(s)	529, 714
BstYI	RGATCY	2 cut(s)	529, 714
BsuI	GTATCC	1 cut(s)	640
CaiI	CAGNNNCTG	1 cut(s)	595
CviAII	CATG	2 cut(s)	302, 341
CviJI	RGCY	9 cut(s)	181, 190, 226, 252, 361, 381, 443, 632, 688
CviKI_1	RGCY	9 cut(s)	181, 190, 226, 252, 361, 381, 443, 632, 688
DdeI	CTNAG	3 cut(s)	240, 329, 698
DpnI	GATC	7 cut(s)	51, 89, 103, 222, 483, 531, 716
DpnII	GATC	7 cut(s)	49, 87, 101, 220, 481, 529, 714
DraI	TTTAAA	1 cut(s)	70
Eam1104I	CTCTTC	3 cut(s)	162, 263, 351
EarI	CTCTTC	3 cut(s)	162, 263, 351
Eco32I	GATATC	1 cut(s)	574
Eco57I	CTGAAG	2 cut(s)	203, 572
Eco88I	CYCGRG	1 cut(s)	518
EcoRV	GATATC	1 cut(s)	574
FaeI	CATG	2 cut(s)	305, 344
FaiI	YATR	8 cut(s)	303, 309, 342, 369, 410, 456, 513, 742
FatI	CATG	2 cut(s)	301, 340
FbaI	TGATCA	1 cut(s)	220
Fnu4HI	GCNGC	1 cut(s)	6
Fsp4HI	GCNGC	1 cut(s)	6
FspBI	CTAG	1 cut(s)	362
GluI	GCNGC	1 cut(s)	6
GsuI	CTGGAG	1 cut(s)	25
Hin1II	CATG	2 cut(s)	305, 344
HindIII	AAGCTT	1 cut(s)	188
HinfI	GANTC	5 cut(s)	119, 200, 323, 523, 592
Hpy166II	GTNNAC	1 cut(s)	97
Hpy188I	TCNGA	2 cut(s)	377, 591
Hpy188III	TCNNGA	4 cut(s)	140, 520, 527, 670
Hpy8I	GTNNAC	1 cut(s)	97
Hpy99I	CGWCG	1 cut(s)	20
HpyAV	CCTTC	2 cut(s)	554, 595
HpyCH4IV	ACGT	1 cut(s)	623
HpyCH4V	TGCA	2 cut(s)	507, 598
HpyF10VI	GCNNNNNNNGC	1 cut(s)	187
HpyF3I	CTNAG	3 cut(s)	240, 329, 698
HpySE526I	ACGT	1 cut(s)	623
Hsp92II	CATG	2 cut(s)	305, 344
Ksp22I	TGATCA	1 cut(s)	220
Kzo9I	GATC	7 cut(s)	49, 87, 101, 220, 481, 529, 714
LguI	GCTCTTC	1 cut(s)	351
LpnPI	CCDG	5 cut(s)	55, 112, 464, 512, 650
LweI	GCATC	1 cut(s)	241
MaeI	CTAG	1 cut(s)	362
MaeII	ACGT	1 cut(s)	623
MaeIII	GTNAC	5 cut(s)	149, 245, 343, 490, 578
MalI	GATC	7 cut(s)	51, 89, 103, 222, 483, 531, 716
MboI	GATC	7 cut(s)	49, 87, 101, 220, 481, 529, 714
MboII	GAAGA	8 cut(s)	179, 196, 272, 280, 368, 484, 726, 729
MflI	RGATCY	2 cut(s)	529, 714
MluCI	AATT	6 cut(s)	28, 211, 263, 414, 605, 728
MlyI	GAGTC	1 cut(s)	601
MnlI	CCTC	3 cut(s)	55, 127, 636
MseI	TTAA	2 cut(s)	69, 720
MslI	CAYNNNNRTG	1 cut(s)	312
Mva1269I	GAATGC	1 cut(s)	319
MwoI	GCNNNNNNNGC	1 cut(s)	187
NdeII	GATC	7 cut(s)	49, 87, 101, 220, 481, 529, 714
NlaIII	CATG	2 cut(s)	305, 344
NmuCI	GTSAC	1 cut(s)	245
NspI	RCATGY	1 cut(s)	344
PaeR7I	CTCGAG	1 cut(s)	518
PciSI	GCTCTTC	1 cut(s)	351
PctI	GAATGC	1 cut(s)	319
PfeI	GAWTC	4 cut(s)	119, 200, 323, 523
PkrI	GCNGC	1 cut(s)	7
PleI	GAGTC	1 cut(s)	600
PpsI	GAGTC	1 cut(s)	600
PstI	CTGCAG	1 cut(s)	600
PstNI	CAGNNNCTG	1 cut(s)	595
PsuI	RGATCY	2 cut(s)	529, 714
RseI	CAYNNNNRTG	1 cut(s)	312
SapI	GCTCTTC	1 cut(s)	351
SaqAI	TTAA	2 cut(s)	69, 720
SatI	GCNGC	1 cut(s)	6
Sau3AI	GATC	7 cut(s)	49, 87, 101, 220, 481, 529, 714
SchI	GAGTC	1 cut(s)	601
SfaNI	GCATC	1 cut(s)	241
SfcI	CTRYAG	1 cut(s)	596
Sfr274I	CTCGAG	1 cut(s)	518
SlaI	CTCGAG	1 cut(s)	518
SmiMI	CAYNNNNRTG	1 cut(s)	312
SmlI	CTYRAG	3 cut(s)	140, 227, 518
SmoI	CTYRAG	3 cut(s)	140, 227, 518
Sse9I	AATT	6 cut(s)	28, 211, 263, 414, 605, 728
SsiI	CCGC	1 cut(s)	5
SspMI	CTAG	1 cut(s)	362
TaiI	ACGT	1 cut(s)	626
TaqI	TCGA	8 cut(s)	48, 235, 427, 470, 484, 519, 661, 669
TasI	AATT	6 cut(s)	28, 211, 263, 414, 605, 728
TauI	GCSGC	1 cut(s)	8
TfiI	GAWTC	4 cut(s)	119, 200, 323, 523
Tru1I	TTAA	2 cut(s)	69, 720
Tru9I	TTAA	2 cut(s)	69, 720
TseFI	GTSAC	1 cut(s)	245
Tsp45I	GTSAC	1 cut(s)	245
TspDTI	ATGAA	7 cut(s)	41, 189, 297, 318, 528, 707, 729
TspGWI	ACGGA	2 cut(s)	509, 739
XapI	RAATTY	1 cut(s)	28
XceI	RCATGY	1 cut(s)	344
XhoI	CTCGAG	1 cut(s)	518
XspI	CTAG	1 cut(s)	362

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.