Basic Information

Type: gene

Biological Identity

Species

rosa_wichuraiana

Chromosome

Chr4

Orthogroup ID

OG0004071

Physical Location & Seq

Genomic Coordinates Reverse (-)

16458641 .. 16460483

Gene Structure 1843 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

Rw4G007650.1

Sequence Viewer

CDS Protein Promoter (2k)

Length: 558 bp

ATGGCGGCAACGACCGACGAAGAAATGGACTCTCTCCTCTCCACTGTCGATCAAATCTACCAGGATTTCAAGGACGGCGTAGCGGAAATCCAATCGGTGAAATCCGCCTGCAATGCCGAGGCGAAGAACCGAGAAGCTCTTGAATTCACCTGCAACAATCTCAAACAAGAGAATGAGCGATTGACGAGAATGTACACCGAGTCTCTGAACGACCTTGCTGATCAGCTCGAACGGCGTAGCACATGCCAGGGCTTGAAGGAAGAGCTCAAGAGAGTTAGGGATGAATGCCTCGGTAAAGAAGAAGAGCATAGGAAGGCTATGGAATTGGTCAAGCAAGACTGTGCAGCCAAGGTTGAGGAATTGGAGGCTCAAATTAGAGGGTTTCTTGTGGAAAAGGCGAAAAATGAAGCAACCATTGATCACCTTCGACAGGATTTAGCTGCACATAAGTCCCATATGCATGTTATGCAAAGCAGATTGGACCAAGTCCAATTGGATGTGGAAACAAAATGTGAGGTCTTAAGGAACTTTTCATGTATGTGTACTAGTATTAGTTAG

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0005575 GO:0005622 GO:0005623 GO:0005737 GO:0005783 GO:0005911 GO:0006810 GO:0008150 GO:0009506 GO:0009987 GO:0010496 GO:0012505 GO:0030054 GO:0043226 GO:0043227 GO:0043229 GO:0043231 GO:0044424 GO:0044444 GO:0044464 GO:0046907 GO:0051179 GO:0051234 GO:0051641 GO:0051649 GO:0055044

KEGG Pathways

Metabolic & Signaling

No pathways identified.

Pfam Domains

Protein Families

No domains found.

Protein Analysis

185

Amino Acids

21.22

Weight (kDa)

5.01

Isoelectric Point (pI)

54.94

Instability Index

Protein Domains (Pfam)

No Pfam domains detected for this protein.

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

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Align Labels (Cladogram)

Image

Tree File

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Publication-ready

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Orthologous Genes (Group: OG0004071)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT4G26020 AT4G26020 AT4G26020
fragaria_vesca	FvH4_4g07070 FvH4_4g07070 FvH4_4g07070 FvH4_4g07070 FvH4_4g07070 FvH4_4g07070 FvH4_4g07070 FvH4_4g07070 FvH4_4g07070 FvH4_4g07070 FvH4_4g07070
malus_domestica	MD16G1247400.v1.1
prunus_persica	Prupe.1G073900_v2.0.a1 Prupe.1G073900_v2.0.a1 Prupe.1G073900_v2.0.a1 Prupe.1G073900_v2.0.a1
pyrus_communis	pycom16g20770
rosa_chinensis	RchiOBHm_Chr4g0399191
rosa_laevigata	RLG00000009291
rosa_multiflora	Rmu_sc0002582.1_g000003 Rmu_sc0024868.1_g000001
rosa_roxburghii	Rroxscaffold_5G00344150
rosa_rugosa	Rorug04G0014800 Rorug04G0014900 Rorug04G0015000
rosa_samantha	Rh4AG092900 Rh4BG090700 Rh4CG101300 Rh4DG085200
rosa_wichuraiana	Rw4G007650

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AarI	CACCTGC	1 cut(s)	158
Acc36I	ACCTGC	1 cut(s)	158
AciI	CCGC	3 cut(s)	5, 83, 105
AcsI	RAATTY	1 cut(s)	143
AfaI	GTAC	2 cut(s)	194, 544
AfiI	CCNNNNNNNGG	1 cut(s)	430
AflII	CTTAAG	1 cut(s)	520
AgsI	TTSAA	3 cut(s)	70, 143, 256
AhlI	ACTAGT	1 cut(s)	545
AjnI	CCWGG	2 cut(s)	60, 246
AluBI	AGCT	4 cut(s)	137, 226, 265, 440
AluI	AGCT	4 cut(s)	137, 226, 265, 440
Alw21I	GWGCWC	1 cut(s)	267
Alw26I	GTCTC	1 cut(s)	207
ApeKI	GCWGC	2 cut(s)	344, 440
ApoI	RAATTY	1 cut(s)	143
AspS9I	GGNCC	1 cut(s)	481
AsuHPI	GGTGA	3 cut(s)	109, 139, 413
AvaII	GGWCC	1 cut(s)	481
BanII	GRGCYC	1 cut(s)	267
Bbv12I	GWGCWC	1 cut(s)	267
BbvI	GCAGC	2 cut(s)	356, 427
BceAI	ACGGC	2 cut(s)	91, 248
BciT130I	CCWGG	2 cut(s)	62, 248
BclI	TGATCA	2 cut(s)	220, 418
BcoDI	GTCTC	1 cut(s)	207
BcuI	ACTAGT	1 cut(s)	545
BfaI	CTAG	1 cut(s)	546
BfrI	CTTAAG	1 cut(s)	520
BfuAI	ACCTGC	1 cut(s)	158
BisI	GCNGC	3 cut(s)	6, 345, 441
BlsI	GCNGC	3 cut(s)	7, 346, 442
Bme1390I	CCNGG	2 cut(s)	62, 248
Bme18I	GGWCC	1 cut(s)	481
BmgT120I	GGNCC	1 cut(s)	481
BmrFI	CCNGG	2 cut(s)	62, 248
BpuEI	CTTGAG	1 cut(s)	251
BsaJI	CCNNGG	4 cut(s)	117, 247, 289, 348
Bsc4I	CCNNNNNNNGG	1 cut(s)	430
Bse3DI	GCAATG	1 cut(s)	118
BseBI	CCWGG	2 cut(s)	62, 248
BseDI	CCNNGG	4 cut(s)	117, 247, 289, 348
BseGI	GGATG	2 cut(s)	286, 502
BseLI	CCNNNNNNNGG	1 cut(s)	430
BseMI	GCAATG	1 cut(s)	118
BseRI	GAGGAG	1 cut(s)	26
BseXI	GCAGC	2 cut(s)	356, 427
BsgI	GTGCAG	2 cut(s)	363, 426
Bsh1285I	CGRYCG	1 cut(s)	15
BsiEI	CGRYCG	1 cut(s)	15
BsiHKAI	GWGCWC	1 cut(s)	267
BslFI	GGGAC	1 cut(s)	436
BslI	CCNNNNNNNGG	1 cut(s)	430
BsmAI	GTCTC	1 cut(s)	207
BsmFI	GGGAC	1 cut(s)	436
BsmI	GAATGC	1 cut(s)	290
Bsp1286I	GDGCHC	1 cut(s)	267
Bsp1407I	TGTACA	1 cut(s)	192
Bsp143I	GATC	3 cut(s)	49, 220, 418
BspACI	CCGC	3 cut(s)	5, 83, 105
BspMI	ACCTGC	1 cut(s)	158
BspQI	GCTCTTC	2 cut(s)	255, 297
BspTI	CTTAAG	1 cut(s)	520
BsrDI	GCAATG	1 cut(s)	118
BsrGI	TGTACA	1 cut(s)	192
BssECI	CCNNGG	4 cut(s)	117, 247, 289, 348
BssMI	GATC	3 cut(s)	49, 220, 418
BssT1I	CCWWGG	1 cut(s)	348
Bst2UI	CCWGG	2 cut(s)	62, 248
Bst4CI	ACNGT	2 cut(s)	46, 341
Bst6I	CTCTTC	2 cut(s)	255, 297
BstAFI	CTTAAG	1 cut(s)	520
BstAPI	GCANNNNNTGC	1 cut(s)	466
BstAUI	TGTACA	1 cut(s)	192
BstC8I	GCNNGC	1 cut(s)	109
BstENI	CCTNNNNNAGG	1 cut(s)	428
BstF5I	GGATG	2 cut(s)	286, 502
BstKTI	GATC	3 cut(s)	52, 223, 421
BstMAI	GTCTC	1 cut(s)	207
BstMBI	GATC	3 cut(s)	49, 220, 418
BstMCI	CGRYCG	1 cut(s)	15
BstMWI	GCNNNNNNNGC	3 cut(s)	113, 232, 466
BstNI	CCWGG	2 cut(s)	62, 248
BstNSI	RCATGY	2 cut(s)	246, 464
BstSCI	CCNGG	2 cut(s)	60, 246
BstV1I	GCAGC	2 cut(s)	356, 427
BtsCI	GGATG	2 cut(s)	286, 502
BtsIMutI	CAGTG	1 cut(s)	42
BveI	ACCTGC	1 cut(s)	158
Cac8I	GCNNGC	1 cut(s)	109
Cfr13I	GGNCC	1 cut(s)	481
Csp6I	GTAC	2 cut(s)	193, 543
CviAII	CATG	3 cut(s)	243, 461, 534
CviJI	RGCY	8 cut(s)	137, 226, 252, 265, 317, 347, 368, 440
CviKI_1	RGCY	8 cut(s)	137, 226, 252, 265, 317, 347, 368, 440
CviQI	GTAC	2 cut(s)	193, 543
DpnI	GATC	3 cut(s)	51, 222, 420
DpnII	GATC	3 cut(s)	49, 220, 418
Eam1104I	CTCTTC	2 cut(s)	255, 297
EarI	CTCTTC	2 cut(s)	255, 297
EciI	GGCGGA	1 cut(s)	94
Ecl136II	GAGCTC	1 cut(s)	265
Eco130I	CCWWGG	1 cut(s)	348
Eco24I	GRGCYC	1 cut(s)	267
Eco47I	GGWCC	1 cut(s)	481
Eco53kI	GAGCTC	1 cut(s)	265
EcoICRI	GAGCTC	1 cut(s)	265
EcoNI	CCTNNNNNAGG	1 cut(s)	428
EcoRI	GAATTC	1 cut(s)	143
EcoRII	CCWGG	2 cut(s)	60, 246
EcoT14I	CCWWGG	1 cut(s)	348
EcoT22I	ATGCAT	1 cut(s)	462
EcoT38I	GRGCYC	1 cut(s)	267
ErhI	CCWWGG	1 cut(s)	348
FaeI	CATG	3 cut(s)	246, 464, 537
FaqI	GGGAC	1 cut(s)	436
FatI	CATG	3 cut(s)	242, 460, 533
FauNDI	CATATG	1 cut(s)	456
FbaI	TGATCA	2 cut(s)	220, 418
Fnu4HI	GCNGC	3 cut(s)	6, 345, 441
FokI	GGATG	2 cut(s)	293, 509
FriOI	GRGCYC	1 cut(s)	267
Fsp4HI	GCNGC	3 cut(s)	6, 345, 441
FspBI	CTAG	1 cut(s)	546
GluI	GCNGC	3 cut(s)	6, 345, 441
Hin1II	CATG	3 cut(s)	246, 464, 537
HinfI	GANTC	2 cut(s)	29, 200
HphI	GGTGA	3 cut(s)	109, 139, 413
Hpy166II	GTNNAC	2 cut(s)	195, 543
Hpy188I	TCNGA	1 cut(s)	207
Hpy188III	TCNNGA	2 cut(s)	140, 268
Hpy8I	GTNNAC	2 cut(s)	195, 543
Hpy99I	CGWCG	1 cut(s)	20
HpyAV	CCTTC	3 cut(s)	250, 307, 434
HpyCH4III	ACNGT	2 cut(s)	46, 341
HpyCH4V	TGCA	6 cut(s)	111, 153, 344, 443, 460, 469
HpyF10VI	GCNNNNNNNGC	3 cut(s)	113, 232, 466
Hsp92II	CATG	3 cut(s)	246, 464, 537
Ksp22I	TGATCA	2 cut(s)	220, 418
Kzo9I	GATC	3 cut(s)	49, 220, 418
LguI	GCTCTTC	2 cut(s)	255, 297
LpnPI	CCDG	7 cut(s)	47, 74, 121, 163, 233, 260, 416
Lsp1109I	GCAGC	2 cut(s)	356, 427
MaeI	CTAG	1 cut(s)	546
MalI	GATC	3 cut(s)	51, 222, 420
MboI	GATC	3 cut(s)	49, 220, 418
MboII	GAAGA	5 cut(s)	32, 136, 272, 311, 314
MfeI	CAATTG	1 cut(s)	491
MhlI	GDGCHC	1 cut(s)	267
MluCI	AATT	5 cut(s)	143, 323, 359, 372, 491
MlyI	GAGTC	2 cut(s)	23, 209
MnlI	CCTC	7 cut(s)	47, 112, 299, 349, 358, 371, 508
Mph1103I	ATGCAT	1 cut(s)	462
MseI	TTAA	1 cut(s)	521
MslI	CAYNNNNRTG	2 cut(s)	459, 538
MspCI	CTTAAG	1 cut(s)	520
MspR9I	CCNGG	2 cut(s)	62, 248
MunI	CAATTG	1 cut(s)	491
Mva1269I	GAATGC	1 cut(s)	290
MvaI	CCWGG	2 cut(s)	62, 248
MwoI	GCNNNNNNNGC	3 cut(s)	113, 232, 466
NdeI	CATATG	1 cut(s)	456
NdeII	GATC	3 cut(s)	49, 220, 418
NlaIII	CATG	3 cut(s)	246, 464, 537
NmeAIII	GCCGAG	1 cut(s)	142
NsiI	ATGCAT	1 cut(s)	462
NspI	RCATGY	2 cut(s)	246, 464
PaqCI	CACCTGC	1 cut(s)	158
PciSI	GCTCTTC	2 cut(s)	255, 297
PctI	GAATGC	1 cut(s)	290
PflFI	GACNNNGTC	1 cut(s)	485
PkrI	GCNGC	3 cut(s)	7, 346, 442
PleI	GAGTC	2 cut(s)	23, 208
PpsI	GAGTC	2 cut(s)	23, 208
Psp124BI	GAGCTC	1 cut(s)	267
Psp6I	CCWGG	2 cut(s)	60, 246
PspGI	CCWGG	2 cut(s)	60, 246
PspPI	GGNCC	1 cut(s)	481
PsyI	GACNNNGTC	1 cut(s)	485
RsaI	GTAC	2 cut(s)	194, 544
RsaNI	GTAC	2 cut(s)	193, 543
RseI	CAYNNNNRTG	2 cut(s)	459, 538
SacI	GAGCTC	1 cut(s)	267
SapI	GCTCTTC	2 cut(s)	255, 297
SaqAI	TTAA	1 cut(s)	521
SatI	GCNGC	3 cut(s)	6, 345, 441
Sau3AI	GATC	3 cut(s)	49, 220, 418
Sau96I	GGNCC	1 cut(s)	481
SchI	GAGTC	2 cut(s)	23, 209
ScrFI	CCNGG	2 cut(s)	62, 248
SduI	GDGCHC	1 cut(s)	267
SetI	ASST	9 cut(s)	139, 152, 216, 228, 267, 354, 426, 442, 519
SinI	GGWCC	1 cut(s)	481
SmiMI	CAYNNNNRTG	2 cut(s)	459, 538
SmlI	CTYRAG	2 cut(s)	266, 520
SmoI	CTYRAG	2 cut(s)	266, 520
SpeI	ACTAGT	1 cut(s)	545
Sse9I	AATT	5 cut(s)	143, 323, 359, 372, 491
SsiI	CCGC	3 cut(s)	5, 83, 105
SspMI	CTAG	1 cut(s)	546
SstI	GAGCTC	1 cut(s)	267
StyD4I	CCNGG	2 cut(s)	60, 246
StyI	CCWWGG	1 cut(s)	348
TaaI	ACNGT	2 cut(s)	46, 341
TaqI	TCGA	3 cut(s)	48, 228, 427
TaqII	GACCGA	1 cut(s)	29
TasI	AATT	5 cut(s)	143, 323, 359, 372, 491
TatI	WGTACW	2 cut(s)	192, 542
TauI	GCSGC	1 cut(s)	8
Tru1I	TTAA	1 cut(s)	521
Tru9I	TTAA	1 cut(s)	521
TscAI	CASTG	1 cut(s)	49
TseI	GCWGC	2 cut(s)	344, 440
TspDTI	ATGAA	3 cut(s)	297, 420, 522
TspRI	CASTG	1 cut(s)	49
Tth111I	GACNNNGTC	1 cut(s)	485
Vha464I	CTTAAG	1 cut(s)	520
VpaK11BI	GGWCC	1 cut(s)	481
XagI	CCTNNNNNAGG	1 cut(s)	428
XapI	RAATTY	1 cut(s)	143
XceI	RCATGY	2 cut(s)	246, 464
XspI	CTAG	1 cut(s)	546
Zsp2I	ATGCAT	1 cut(s)	462

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.