Basic Information

Type: gene

Biological Identity

Species

rosa_samantha

Chromosome

Chr4A

Orthogroup ID

OG0004071

Physical Location & Seq

Genomic Coordinates Reverse (-)

19706902 .. 19708425

Gene Structure 1524 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

Rh4AG092900.1

Sequence Viewer

CDS Protein Promoter (2k)

Length: 750 bp

ATGGCGGCAACGACCGACGAAGAAATGGACTCTCTCCTCTCCACTGTCGATCAAATCTACCAGGATTTCAAGGACGGCGTAGCGGAAATCCAATCGGTGAAATCCGCCTGCAATGCCGAGGCGAAGAAGCGAGAAGCTCTTGAATTCACCTGCAACAATCTCAAACAAGAGAATGAGCGATTGACGAGAATGTACACCGAGTCTCTGAACGACCTTGCTGATCAGCTCGAACGGCGTAGCACATGCCAGGGCTTGAAGGAAGAGCTCAAGAGTGTTAGGGATGAATGCCTTGGTAAAGAAGATGAGCATAGGAAGGCTATGGAATTGGTCAAGCAAGACTGTGCAGCCAAGGTTGAGGAATTGGAGGCTCAAATTAGAGGGTTTCTTGTGGAAAAGGCGAAAAATGAAGCAACCATTGATCACCTTCGACAGGATTTAGCTGCACATAAGTACCATATGCATGTTATGCAAAGCAGAATGGACCAAGTCCAATTGGATGTGGAAACAAAATATGTTTTTGAGATTCAGGATTTGAAGGACTGTATCGCAATCGAACAGGAGGAGAAAAATGAGTTGAATAGAAAACTCCAGGATTTAGAAAAAGAAATGCTGGTTAGCAGATCAAAGCTTGTGCAGCAGCAACGAGATACGAATTCAAATTGGCAGGTTGAAACACTTAAGACCAAGCTTATGAAGCTGAGGAAGGAGAATGAGATCTTAAAGCGCAAACTACATGCAGATGAGGGCTAG

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0005575 GO:0005622 GO:0005623 GO:0005737 GO:0005783 GO:0005911 GO:0006810 GO:0008150 GO:0009506 GO:0009987 GO:0010496 GO:0012505 GO:0030054 GO:0043226 GO:0043227 GO:0043229 GO:0043231 GO:0044424 GO:0044444 GO:0044464 GO:0046907 GO:0051179 GO:0051234 GO:0051641 GO:0051649 GO:0055044

KEGG Pathways

Metabolic & Signaling

No pathways identified.

Pfam Domains

Protein Families

No domains found.

Protein Analysis

249

Amino Acids

29.08

Weight (kDa)

5.23

Isoelectric Point (pI)

48.42

Instability Index

Protein Domains (Pfam)

No Pfam domains detected for this protein.

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

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Align Labels (Cladogram)

Image

Tree File

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Publication-ready

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Orthologous Genes (Group: OG0004071)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT4G26020 AT4G26020 AT4G26020
fragaria_vesca	FvH4_4g07070 FvH4_4g07070 FvH4_4g07070 FvH4_4g07070 FvH4_4g07070 FvH4_4g07070 FvH4_4g07070 FvH4_4g07070 FvH4_4g07070 FvH4_4g07070 FvH4_4g07070
malus_domestica	MD16G1247400.v1.1
prunus_persica	Prupe.1G073900_v2.0.a1 Prupe.1G073900_v2.0.a1 Prupe.1G073900_v2.0.a1 Prupe.1G073900_v2.0.a1
pyrus_communis	pycom16g20770
rosa_chinensis	RchiOBHm_Chr4g0399191
rosa_laevigata	RLG00000009291
rosa_multiflora	Rmu_sc0002582.1_g000003 Rmu_sc0024868.1_g000001
rosa_roxburghii	Rroxscaffold_5G00344150
rosa_rugosa	Rorug04G0014800 Rorug04G0014900 Rorug04G0015000
rosa_samantha	Rh4AG092900 Rh4BG090700 Rh4CG101300 Rh4DG085200
rosa_wichuraiana	Rw4G007650

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AarI	CACCTGC	1 cut(s)	158
Acc36I	ACCTGC	2 cut(s)	158, 655
AciI	CCGC	3 cut(s)	5, 83, 105
AcsI	RAATTY	2 cut(s)	143, 652
AfaI	GTAC	2 cut(s)	194, 452
AfiI	CCNNNNNNNGG	1 cut(s)	430
AflII	CTTAAG	1 cut(s)	677
AgsI	TTSAA	7 cut(s)	70, 143, 256, 535, 577, 657, 671
AjnI	CCWGG	3 cut(s)	60, 246, 588
AluBI	AGCT	7 cut(s)	137, 226, 265, 440, 628, 688, 697
AluI	AGCT	7 cut(s)	137, 226, 265, 440, 628, 688, 697
Alw21I	GWGCWC	1 cut(s)	267
Alw26I	GTCTC	1 cut(s)	207
ApeKI	GCWGC	4 cut(s)	344, 440, 634, 637
ApoI	RAATTY	2 cut(s)	143, 652
AspLEI	GCGC	1 cut(s)	726
AspS9I	GGNCC	1 cut(s)	481
AsuHPI	GGTGA	3 cut(s)	109, 139, 413
AvaII	GGWCC	1 cut(s)	481
BaeI	ACNNNNGTAYC	2 cut(s)	434, 467
BanII	GRGCYC	1 cut(s)	267
Bbv12I	GWGCWC	1 cut(s)	267
BbvCI	CCTCAGC	1 cut(s)	698
BbvI	GCAGC	4 cut(s)	356, 427, 646, 649
BceAI	ACGGC	2 cut(s)	91, 248
BciT130I	CCWGG	3 cut(s)	62, 248, 590
BclI	TGATCA	2 cut(s)	220, 418
BcoDI	GTCTC	1 cut(s)	207
BfaI	CTAG	1 cut(s)	748
BfrI	CTTAAG	1 cut(s)	677
BfuAI	ACCTGC	2 cut(s)	158, 655
BglII	AGATCT	1 cut(s)	714
BisI	GCNGC	5 cut(s)	6, 345, 441, 635, 638
BlsI	GCNGC	5 cut(s)	7, 346, 442, 636, 639
Bme1390I	CCNGG	3 cut(s)	62, 248, 590
Bme18I	GGWCC	1 cut(s)	481
BmgT120I	GGNCC	1 cut(s)	481
BmrFI	CCNGG	3 cut(s)	62, 248, 590
BpmI	CTGGAG	1 cut(s)	572
Bpu10I	CCTNAGC	1 cut(s)	698
BpuEI	CTTGAG	1 cut(s)	251
BsaJI	CCNNGG	4 cut(s)	117, 247, 289, 348
Bsc4I	CCNNNNNNNGG	1 cut(s)	430
Bse3DI	GCAATG	1 cut(s)	118
BseBI	CCWGG	3 cut(s)	62, 248, 590
BseDI	CCNNGG	4 cut(s)	117, 247, 289, 348
BseGI	GGATG	2 cut(s)	286, 502
BseLI	CCNNNNNNNGG	1 cut(s)	430
BseMI	GCAATG	1 cut(s)	118
BseMII	CTCAG	1 cut(s)	689
BseRI	GAGGAG	2 cut(s)	26, 575
BseXI	GCAGC	4 cut(s)	356, 427, 646, 649
BsgI	GTGCAG	3 cut(s)	363, 426, 653
Bsh1285I	CGRYCG	1 cut(s)	15
BsiEI	CGRYCG	1 cut(s)	15
BsiHKAI	GWGCWC	1 cut(s)	267
BslI	CCNNNNNNNGG	1 cut(s)	430
BsmAI	GTCTC	1 cut(s)	207
BsmI	GAATGC	1 cut(s)	290
Bsp1286I	GDGCHC	1 cut(s)	267
Bsp1407I	TGTACA	1 cut(s)	192
Bsp143I	GATC	5 cut(s)	49, 220, 418, 620, 714
BspACI	CCGC	3 cut(s)	5, 83, 105
BspCNI	CTCAG	1 cut(s)	690
BspMI	ACCTGC	2 cut(s)	158, 655
BspQI	GCTCTTC	1 cut(s)	255
BspTI	CTTAAG	1 cut(s)	677
BsrDI	GCAATG	1 cut(s)	118
BsrGI	TGTACA	1 cut(s)	192
BssECI	CCNNGG	4 cut(s)	117, 247, 289, 348
BssMI	GATC	5 cut(s)	49, 220, 418, 620, 714
BssT1I	CCWWGG	2 cut(s)	289, 348
Bst2UI	CCWGG	3 cut(s)	62, 248, 590
Bst4CI	ACNGT	3 cut(s)	46, 341, 542
Bst6I	CTCTTC	1 cut(s)	255
BstAFI	CTTAAG	1 cut(s)	677
BstAPI	GCANNNNNTGC	1 cut(s)	466
BstAUI	TGTACA	1 cut(s)	192
BstC8I	GCNNGC	1 cut(s)	109
BstDEI	CTNAG	1 cut(s)	698
BstENI	CCTNNNNNAGG	1 cut(s)	428
BstF5I	GGATG	2 cut(s)	286, 502
BstHHI	GCGC	1 cut(s)	726
BstKTI	GATC	5 cut(s)	52, 223, 421, 623, 717
BstMAI	GTCTC	1 cut(s)	207
BstMBI	GATC	5 cut(s)	49, 220, 418, 620, 714
BstMCI	CGRYCG	1 cut(s)	15
BstMWI	GCNNNNNNNGC	5 cut(s)	113, 232, 466, 634, 694
BstNI	CCWGG	3 cut(s)	62, 248, 590
BstNSI	RCATGY	3 cut(s)	246, 464, 737
BstSCI	CCNGG	3 cut(s)	60, 246, 588
BstV1I	GCAGC	4 cut(s)	356, 427, 646, 649
BstX2I	RGATCY	1 cut(s)	714
BstYI	RGATCY	1 cut(s)	714
BtsCI	GGATG	2 cut(s)	286, 502
BtsIMutI	CAGTG	1 cut(s)	42
BveI	ACCTGC	2 cut(s)	158, 655
Cac8I	GCNNGC	1 cut(s)	109
CfoI	GCGC	1 cut(s)	726
Cfr13I	GGNCC	1 cut(s)	481
Csp6I	GTAC	2 cut(s)	193, 451
CviAII	CATG	3 cut(s)	243, 461, 734
CviQI	GTAC	2 cut(s)	193, 451
DdeI	CTNAG	1 cut(s)	698
DpnI	GATC	5 cut(s)	51, 222, 420, 622, 716
DpnII	GATC	5 cut(s)	49, 220, 418, 620, 714
Eam1104I	CTCTTC	1 cut(s)	255
EarI	CTCTTC	1 cut(s)	255
EciI	GGCGGA	1 cut(s)	94
Ecl136II	GAGCTC	1 cut(s)	265
Eco130I	CCWWGG	2 cut(s)	289, 348
Eco24I	GRGCYC	1 cut(s)	267
Eco47I	GGWCC	1 cut(s)	481
Eco53kI	GAGCTC	1 cut(s)	265
EcoICRI	GAGCTC	1 cut(s)	265
EcoNI	CCTNNNNNAGG	1 cut(s)	428
EcoRI	GAATTC	2 cut(s)	143, 652
EcoRII	CCWGG	3 cut(s)	60, 246, 588
EcoT14I	CCWWGG	2 cut(s)	289, 348
EcoT22I	ATGCAT	1 cut(s)	462
EcoT38I	GRGCYC	1 cut(s)	267
ErhI	CCWWGG	2 cut(s)	289, 348
FaeI	CATG	3 cut(s)	246, 464, 737
FatI	CATG	3 cut(s)	242, 460, 733
FauNDI	CATATG	1 cut(s)	456
FbaI	TGATCA	2 cut(s)	220, 418
Fnu4HI	GCNGC	5 cut(s)	6, 345, 441, 635, 638
FokI	GGATG	2 cut(s)	293, 509
FriOI	GRGCYC	1 cut(s)	267
Fsp4HI	GCNGC	5 cut(s)	6, 345, 441, 635, 638
FspBI	CTAG	1 cut(s)	748
GlaI	GCGC	1 cut(s)	725
GluI	GCNGC	5 cut(s)	6, 345, 441, 635, 638
GsuI	CTGGAG	1 cut(s)	572
HhaI	GCGC	1 cut(s)	726
Hin1II	CATG	3 cut(s)	246, 464, 737
Hin6I	GCGC	1 cut(s)	724
HinP1I	GCGC	1 cut(s)	724
HindIII	AAGCTT	2 cut(s)	626, 686
HinfI	GANTC	3 cut(s)	29, 200, 523
HphI	GGTGA	3 cut(s)	109, 139, 413
Hpy166II	GTNNAC	1 cut(s)	195
Hpy188I	TCNGA	1 cut(s)	207
Hpy188III	TCNNGA	3 cut(s)	140, 268, 527
Hpy8I	GTNNAC	1 cut(s)	195
Hpy99I	CGWCG	1 cut(s)	20
HpyAV	CCTTC	5 cut(s)	250, 307, 434, 529, 697
HpyCH4III	ACNGT	3 cut(s)	46, 341, 542
HpyCH4V	TGCA	8 cut(s)	111, 153, 344, 443, 460, 469, 634, 737
HpyF10VI	GCNNNNNNNGC	5 cut(s)	113, 232, 466, 634, 694
HpyF3I	CTNAG	1 cut(s)	698
Hsp92II	CATG	3 cut(s)	246, 464, 737
HspAI	GCGC	1 cut(s)	724
Ksp22I	TGATCA	2 cut(s)	220, 418
Kzo9I	GATC	5 cut(s)	49, 220, 418, 620, 714
LguI	GCTCTTC	1 cut(s)	255
Lsp1109I	GCAGC	4 cut(s)	356, 427, 646, 649
MaeI	CTAG	1 cut(s)	748
MalI	GATC	5 cut(s)	51, 222, 420, 622, 716
MboI	GATC	5 cut(s)	49, 220, 418, 620, 714
MboII	GAAGA	4 cut(s)	32, 136, 272, 311
MfeI	CAATTG	1 cut(s)	491
MflI	RGATCY	1 cut(s)	714
MhlI	GDGCHC	1 cut(s)	267
MluCI	AATT	7 cut(s)	143, 323, 359, 372, 491, 652, 658
MlyI	GAGTC	2 cut(s)	23, 209
MnlI	CCTC	8 cut(s)	47, 112, 349, 358, 371, 553, 693, 736
Mph1103I	ATGCAT	1 cut(s)	462
MseI	TTAA	2 cut(s)	678, 719
MslI	CAYNNNNRTG	2 cut(s)	459, 738
MspCI	CTTAAG	1 cut(s)	677
MspR9I	CCNGG	3 cut(s)	62, 248, 590
MunI	CAATTG	1 cut(s)	491
Mva1269I	GAATGC	1 cut(s)	290
MvaI	CCWGG	3 cut(s)	62, 248, 590
MwoI	GCNNNNNNNGC	5 cut(s)	113, 232, 466, 634, 694
NdeI	CATATG	1 cut(s)	456
NdeII	GATC	5 cut(s)	49, 220, 418, 620, 714
NlaIII	CATG	3 cut(s)	246, 464, 737
NmeAIII	GCCGAG	1 cut(s)	142
NsiI	ATGCAT	1 cut(s)	462
NspI	RCATGY	3 cut(s)	246, 464, 737
PaqCI	CACCTGC	1 cut(s)	158
PciSI	GCTCTTC	1 cut(s)	255
PctI	GAATGC	1 cut(s)	290
PfeI	GAWTC	1 cut(s)	523
PflFI	GACNNNGTC	1 cut(s)	485
PfoI	TCCNGGA	1 cut(s)	588
PkrI	GCNGC	5 cut(s)	7, 346, 442, 636, 639
PleI	GAGTC	2 cut(s)	23, 208
PpsI	GAGTC	2 cut(s)	23, 208
Psp124BI	GAGCTC	1 cut(s)	267
Psp6I	CCWGG	3 cut(s)	60, 246, 588
PspGI	CCWGG	3 cut(s)	60, 246, 588
PspPI	GGNCC	1 cut(s)	481
PsuI	RGATCY	1 cut(s)	714
PsyI	GACNNNGTC	1 cut(s)	485
RsaI	GTAC	2 cut(s)	194, 452
RsaNI	GTAC	2 cut(s)	193, 451
RseI	CAYNNNNRTG	2 cut(s)	459, 738
SacI	GAGCTC	1 cut(s)	267
SapI	GCTCTTC	1 cut(s)	255
SaqAI	TTAA	2 cut(s)	678, 719
SatI	GCNGC	5 cut(s)	6, 345, 441, 635, 638
Sau3AI	GATC	5 cut(s)	49, 220, 418, 620, 714
Sau96I	GGNCC	1 cut(s)	481
SchI	GAGTC	2 cut(s)	23, 209
ScrFI	CCNGG	3 cut(s)	62, 248, 590
SduI	GDGCHC	1 cut(s)	267
SinI	GGWCC	1 cut(s)	481
SmiMI	CAYNNNNRTG	2 cut(s)	459, 738
SmlI	CTYRAG	2 cut(s)	266, 677
SmoI	CTYRAG	2 cut(s)	266, 677
Sse9I	AATT	7 cut(s)	143, 323, 359, 372, 491, 652, 658
SsiI	CCGC	3 cut(s)	5, 83, 105
SspMI	CTAG	1 cut(s)	748
SstI	GAGCTC	1 cut(s)	267
StyD4I	CCNGG	3 cut(s)	60, 246, 588
StyI	CCWWGG	2 cut(s)	289, 348
TaaI	ACNGT	3 cut(s)	46, 341, 542
TaqI	TCGA	4 cut(s)	48, 228, 427, 552
TaqII	GACCGA	1 cut(s)	29
TasI	AATT	7 cut(s)	143, 323, 359, 372, 491, 652, 658
TatI	WGTACW	1 cut(s)	192
TauI	GCSGC	1 cut(s)	8
TfiI	GAWTC	1 cut(s)	523
Tru1I	TTAA	2 cut(s)	678, 719
Tru9I	TTAA	2 cut(s)	678, 719
TscAI	CASTG	1 cut(s)	49
TseI	GCWGC	4 cut(s)	344, 440, 634, 637
TspDTI	ATGAA	3 cut(s)	297, 420, 707
TspRI	CASTG	1 cut(s)	49
Tth111I	GACNNNGTC	1 cut(s)	485
Vha464I	CTTAAG	1 cut(s)	677
VpaK11BI	GGWCC	1 cut(s)	481
XagI	CCTNNNNNAGG	1 cut(s)	428
XapI	RAATTY	2 cut(s)	143, 652
XceI	RCATGY	3 cut(s)	246, 464, 737
XspI	CTAG	1 cut(s)	748
Zsp2I	ATGCAT	1 cut(s)	462

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.