Basic Information

Type: gene

Biological Identity

Species

rosa_multiflora

Chromosome

Rmu_sc0002582.1

Orthogroup ID

OG0004071

Physical Location & Seq

Genomic Coordinates Reverse (-)

32578 .. 34196

Gene Structure 1619 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

Rmu_sc0002582.1_g000003.1.cds

Sequence Viewer

CDS Protein Promoter (2k)

Length: 840 bp

atgcgggtcgcacatctcagcccgacccgccccggccccgttggcaacaggaaaaaggcccagttgcagcaattgaggacagaaagaatggcggcaacgaccgacgaagaaatggactctctcctttccactgccgatcaaatctaccaggatttcaaggacggcgtagcggaaatccaatcggtgaaatccgcctgcaatgccgaggcgaagaggcgagaagctcttgaattcacctgcaacaatctcaaacaagagaatgagcgattgacgagaatgtacaccgagtctctgaacgaccttgctgatcagctcgaacggcgtagcacatgccagggcttgaaggaagagctcaagagagttagggatgaatgcctcggtaaagaagaagagcataggaaggctatggaattggtcaagcaagactgtgcagccaaggttgaggaattggaggctcaaattagaaggtttcttgtggaaaaggcgaaaaatgaagcaaccattgatcaccttggacaggatttagctgcacataagtcccatatgcatgttatgcaaagcagattggaccaagtccaattggatgtggaaacaaaatcagatgtttttgagattcaggatttgaaggactgtatcgcaatcgaacaggaggagaaaaatgagttgaatagaaaactccaggatttagaaaaagaaatgctggttagcagatcaaagcttgtgcagcagcaacgagatacgaattcaaattggcaggttgaaacacttaagaccaagcttatgaagctgaggaaggagaatgagatcttaaagcgcaaactacatgcagatgagggctag

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0005575 GO:0005622 GO:0005623 GO:0005737 GO:0005783 GO:0005911 GO:0006810 GO:0008150 GO:0009506 GO:0009987 GO:0010496 GO:0012505 GO:0030054 GO:0043226 GO:0043227 GO:0043229 GO:0043231 GO:0044424 GO:0044444 GO:0044464 GO:0046907 GO:0051179 GO:0051234 GO:0051641 GO:0051649 GO:0055044

KEGG Pathways

Metabolic & Signaling

No pathways identified.

Pfam Domains

Protein Families

No domains found.

Protein Analysis

279

Amino Acids

32.41

Weight (kDa)

5.93

Isoelectric Point (pI)

54.94

Instability Index

Protein Domains (Pfam)

No Pfam domains detected for this protein.

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

Style Settings

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Align Labels (Cladogram)

Image

Tree File

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Publication-ready

iTOL Interactive Tree Of Life · Most popular EvolView Flexible annotations MEGA Desktop phylogenetics suite FigTree Desktop tree editor

Orthologous Genes (Group: OG0004071)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT4G26020 AT4G26020 AT4G26020
fragaria_vesca	FvH4_4g07070 FvH4_4g07070 FvH4_4g07070 FvH4_4g07070 FvH4_4g07070 FvH4_4g07070 FvH4_4g07070 FvH4_4g07070 FvH4_4g07070 FvH4_4g07070 FvH4_4g07070
malus_domestica	MD16G1247400.v1.1
prunus_persica	Prupe.1G073900_v2.0.a1 Prupe.1G073900_v2.0.a1 Prupe.1G073900_v2.0.a1 Prupe.1G073900_v2.0.a1
pyrus_communis	pycom16g20770
rosa_chinensis	RchiOBHm_Chr4g0399191
rosa_laevigata	RLG00000009291
rosa_multiflora	Rmu_sc0002582.1_g000003 Rmu_sc0024868.1_g000001
rosa_roxburghii	Rroxscaffold_5G00344150
rosa_rugosa	Rorug04G0014800 Rorug04G0014900 Rorug04G0015000
rosa_samantha	Rh4AG092900 Rh4BG090700 Rh4CG101300 Rh4DG085200
rosa_wichuraiana	Rw4G007650

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AarI	CACCTGC	1 cut(s)	245
Acc36I	ACCTGC	2 cut(s)	245, 745
AciI	CCGC	5 cut(s)	4, 28, 92, 170, 192
AcsI	RAATTY	2 cut(s)	230, 742
AfaI	GTAC	1 cut(s)	281
AfiI	CCNNNNNNNGG	1 cut(s)	517
AflII	CTTAAG	1 cut(s)	767
AgsI	TTSAA	7 cut(s)	157, 230, 343, 625, 667, 747, 761
AjnI	CCWGG	3 cut(s)	147, 333, 678
AluBI	AGCT	7 cut(s)	224, 313, 352, 527, 718, 778, 787
AluI	AGCT	7 cut(s)	224, 313, 352, 527, 718, 778, 787
Alw21I	GWGCWC	1 cut(s)	354
Alw26I	GTCTC	1 cut(s)	294
AoxI	GGCC	2 cut(s)	34, 57
ApeKI	GCWGC	5 cut(s)	67, 431, 527, 724, 727
ApoI	RAATTY	2 cut(s)	230, 742
AspLEI	GCGC	1 cut(s)	816
AspS9I	GGNCC	3 cut(s)	35, 58, 568
AsuC2I	CCSGG	1 cut(s)	33
AsuHPI	GGTGA	3 cut(s)	196, 226, 500
AvaII	GGWCC	1 cut(s)	568
BanII	GRGCYC	1 cut(s)	354
Bbv12I	GWGCWC	1 cut(s)	354
BbvCI	CCTCAGC	1 cut(s)	788
BbvI	GCAGC	5 cut(s)	79, 443, 514, 736, 739
BceAI	ACGGC	2 cut(s)	178, 335
BciT130I	CCWGG	3 cut(s)	149, 335, 680
BclI	TGATCA	2 cut(s)	307, 505
BcnI	CCSGG	1 cut(s)	33
BcoDI	GTCTC	1 cut(s)	294
BfaI	CTAG	1 cut(s)	838
BfrI	CTTAAG	1 cut(s)	767
BfuAI	ACCTGC	2 cut(s)	245, 745
BglI	GCCNNNNNGGC	1 cut(s)	42
BglII	AGATCT	1 cut(s)	804
BisI	GCNGC	6 cut(s)	68, 93, 432, 528, 725, 728
BlsI	GCNGC	6 cut(s)	69, 94, 433, 529, 726, 729
Bme1390I	CCNGG	4 cut(s)	33, 149, 335, 680
Bme18I	GGWCC	1 cut(s)	568
BmgT120I	GGNCC	3 cut(s)	35, 58, 568
BmiI	GGNNCC	1 cut(s)	37
BmrFI	CCNGG	4 cut(s)	33, 149, 335, 680
BmrI	ACTGGG	1 cut(s)	55
BmuI	ACTGGG	1 cut(s)	55
BpmI	CTGGAG	1 cut(s)	662
Bpu10I	CCTNAGC	1 cut(s)	788
BpuEI	CTTGAG	1 cut(s)	338
BpuMI	CCSGG	1 cut(s)	33
BsaJI	CCNNGG	6 cut(s)	31, 204, 334, 376, 435, 511
Bsc4I	CCNNNNNNNGG	1 cut(s)	517
Bse1I	ACTGG	1 cut(s)	61
Bse3DI	GCAATG	1 cut(s)	205
BseBI	CCWGG	3 cut(s)	149, 335, 680
BseDI	CCNNGG	6 cut(s)	31, 204, 334, 376, 435, 511
BseGI	GGATG	2 cut(s)	373, 589
BseLI	CCNNNNNNNGG	1 cut(s)	517
BseMI	GCAATG	1 cut(s)	205
BseMII	CTCAG	2 cut(s)	31, 779
BseNI	ACTGG	1 cut(s)	61
BseRI	GAGGAG	1 cut(s)	665
BseXI	GCAGC	5 cut(s)	79, 443, 514, 736, 739
BsgI	GTGCAG	3 cut(s)	450, 513, 743
Bsh1285I	CGRYCG	1 cut(s)	102
BshFI	GGCC	2 cut(s)	36, 59
BsiEI	CGRYCG	1 cut(s)	102
BsiHKAI	GWGCWC	1 cut(s)	354
BsiSI	CCGG	1 cut(s)	33
BslFI	GGGAC	1 cut(s)	523
BslI	CCNNNNNNNGG	1 cut(s)	517
BsmAI	GTCTC	1 cut(s)	294
BsmFI	GGGAC	1 cut(s)	523
BsmI	GAATGC	1 cut(s)	377
BsnI	GGCC	2 cut(s)	36, 59
Bsp1286I	GDGCHC	1 cut(s)	354
Bsp1407I	TGTACA	1 cut(s)	279
Bsp143I	GATC	5 cut(s)	136, 307, 505, 710, 804
BspACI	CCGC	5 cut(s)	4, 28, 92, 170, 192
BspANI	GGCC	2 cut(s)	36, 59
BspCNI	CTCAG	2 cut(s)	30, 780
BspLI	GGNNCC	1 cut(s)	37
BspMI	ACCTGC	2 cut(s)	245, 745
BspQI	GCTCTTC	2 cut(s)	342, 384
BspTI	CTTAAG	1 cut(s)	767
BsrDI	GCAATG	1 cut(s)	205
BsrGI	TGTACA	1 cut(s)	279
BsrI	ACTGG	1 cut(s)	61
BssECI	CCNNGG	6 cut(s)	31, 204, 334, 376, 435, 511
BssMI	GATC	5 cut(s)	136, 307, 505, 710, 804
BssT1I	CCWWGG	2 cut(s)	435, 511
Bst2UI	CCWGG	3 cut(s)	149, 335, 680
Bst4CI	ACNGT	2 cut(s)	428, 632
Bst6I	CTCTTC	3 cut(s)	206, 342, 384
BstAFI	CTTAAG	1 cut(s)	767
BstAPI	GCANNNNNTGC	1 cut(s)	553
BstAUI	TGTACA	1 cut(s)	279
BstC8I	GCNNGC	1 cut(s)	196
BstDEI	CTNAG	2 cut(s)	17, 788
BstENI	CCTNNNNNAGG	1 cut(s)	515
BstF5I	GGATG	2 cut(s)	373, 589
BstHHI	GCGC	1 cut(s)	816
BstKTI	GATC	5 cut(s)	139, 310, 508, 713, 807
BstMAI	GTCTC	1 cut(s)	294
BstMBI	GATC	5 cut(s)	136, 307, 505, 710, 804
BstMCI	CGRYCG	1 cut(s)	102
BstMWI	GCNNNNNNNGC	7 cut(s)	27, 42, 200, 319, 553, 724, 784
BstNI	CCWGG	3 cut(s)	149, 335, 680
BstNSI	RCATGY	3 cut(s)	333, 551, 827
BstSCI	CCNGG	4 cut(s)	31, 147, 333, 678
BstV1I	GCAGC	5 cut(s)	79, 443, 514, 736, 739
BstX2I	RGATCY	1 cut(s)	804
BstYI	RGATCY	1 cut(s)	804
BsuRI	GGCC	2 cut(s)	36, 59
BtsCI	GGATG	2 cut(s)	373, 589
BtsI	GCAGTG	1 cut(s)	129
BtsIMutI	CAGTG	1 cut(s)	129
BveI	ACCTGC	2 cut(s)	245, 745
Cac8I	GCNNGC	1 cut(s)	196
CfoI	GCGC	1 cut(s)	816
Cfr13I	GGNCC	3 cut(s)	35, 58, 568
Csp6I	GTAC	1 cut(s)	280
CviAII	CATG	3 cut(s)	330, 548, 824
CviQI	GTAC	1 cut(s)	280
DdeI	CTNAG	2 cut(s)	17, 788
DpnI	GATC	5 cut(s)	138, 309, 507, 712, 806
DpnII	GATC	5 cut(s)	136, 307, 505, 710, 804
Eam1104I	CTCTTC	3 cut(s)	206, 342, 384
EarI	CTCTTC	3 cut(s)	206, 342, 384
EciI	GGCGGA	1 cut(s)	181
Ecl136II	GAGCTC	1 cut(s)	352
Eco130I	CCWWGG	2 cut(s)	435, 511
Eco24I	GRGCYC	1 cut(s)	354
Eco47I	GGWCC	1 cut(s)	568
Eco53kI	GAGCTC	1 cut(s)	352
EcoICRI	GAGCTC	1 cut(s)	352
EcoNI	CCTNNNNNAGG	1 cut(s)	515
EcoRI	GAATTC	2 cut(s)	230, 742
EcoRII	CCWGG	3 cut(s)	147, 333, 678
EcoT14I	CCWWGG	2 cut(s)	435, 511
EcoT22I	ATGCAT	1 cut(s)	549
EcoT38I	GRGCYC	1 cut(s)	354
ErhI	CCWWGG	2 cut(s)	435, 511
FaeI	CATG	3 cut(s)	333, 551, 827
FaqI	GGGAC	1 cut(s)	523
FatI	CATG	3 cut(s)	329, 547, 823
FauI	CCCGC	1 cut(s)	35
FauNDI	CATATG	1 cut(s)	543
FbaI	TGATCA	2 cut(s)	307, 505
Fnu4HI	GCNGC	6 cut(s)	68, 93, 432, 528, 725, 728
FokI	GGATG	2 cut(s)	380, 596
FriOI	GRGCYC	1 cut(s)	354
Fsp4HI	GCNGC	6 cut(s)	68, 93, 432, 528, 725, 728
FspBI	CTAG	1 cut(s)	838
GlaI	GCGC	1 cut(s)	815
GluI	GCNGC	6 cut(s)	68, 93, 432, 528, 725, 728
GsuI	CTGGAG	1 cut(s)	662
HaeIII	GGCC	2 cut(s)	36, 59
HapII	CCGG	1 cut(s)	33
HhaI	GCGC	1 cut(s)	816
Hin1II	CATG	3 cut(s)	333, 551, 827
Hin6I	GCGC	1 cut(s)	814
HinP1I	GCGC	1 cut(s)	814
HindIII	AAGCTT	2 cut(s)	716, 776
HinfI	GANTC	3 cut(s)	116, 287, 613
HpaII	CCGG	1 cut(s)	33
HphI	GGTGA	3 cut(s)	196, 226, 500
Hpy166II	GTNNAC	1 cut(s)	282
Hpy188I	TCNGA	2 cut(s)	294, 601
Hpy188III	TCNNGA	3 cut(s)	227, 355, 617
Hpy8I	GTNNAC	1 cut(s)	282
Hpy99I	CGWCG	1 cut(s)	107
HpyAV	CCTTC	5 cut(s)	337, 394, 459, 619, 787
HpyCH4III	ACNGT	2 cut(s)	428, 632
HpyCH4V	TGCA	9 cut(s)	67, 198, 240, 431, 530, 547, 556, 724, 827
HpyF10VI	GCNNNNNNNGC	7 cut(s)	27, 42, 200, 319, 553, 724, 784
HpyF3I	CTNAG	2 cut(s)	17, 788
Hsp92II	CATG	3 cut(s)	333, 551, 827
HspAI	GCGC	1 cut(s)	814
Ksp22I	TGATCA	2 cut(s)	307, 505
Kzo9I	GATC	5 cut(s)	136, 307, 505, 710, 804
LguI	GCTCTTC	2 cut(s)	342, 384
Lsp1109I	GCAGC	5 cut(s)	79, 443, 514, 736, 739
MaeI	CTAG	1 cut(s)	838
MalI	GATC	5 cut(s)	138, 309, 507, 712, 806
MboI	GATC	5 cut(s)	136, 307, 505, 710, 804
MboII	GAAGA	5 cut(s)	119, 223, 359, 398, 401
MfeI	CAATTG	2 cut(s)	71, 578
MflI	RGATCY	1 cut(s)	804
MhlI	GDGCHC	1 cut(s)	354
MluCI	AATT	8 cut(s)	71, 230, 410, 446, 459, 578, 742, 748
MlyI	GAGTC	2 cut(s)	110, 296
MnlI	CCTC	9 cut(s)	69, 199, 207, 386, 436, 445, 643, 783, 826
Mph1103I	ATGCAT	1 cut(s)	549
MseI	TTAA	2 cut(s)	768, 809
MslI	CAYNNNNRTG	2 cut(s)	546, 828
MspCI	CTTAAG	1 cut(s)	767
MspI	CCGG	1 cut(s)	33
MspR9I	CCNGG	4 cut(s)	33, 149, 335, 680
MunI	CAATTG	2 cut(s)	71, 578
Mva1269I	GAATGC	1 cut(s)	377
MvaI	CCWGG	3 cut(s)	149, 335, 680
MwoI	GCNNNNNNNGC	7 cut(s)	27, 42, 200, 319, 553, 724, 784
NciI	CCSGG	1 cut(s)	33
NdeI	CATATG	1 cut(s)	543
NdeII	GATC	5 cut(s)	136, 307, 505, 710, 804
NlaIII	CATG	3 cut(s)	333, 551, 827
NlaIV	GGNNCC	1 cut(s)	37
NmeAIII	GCCGAG	1 cut(s)	229
NsiI	ATGCAT	1 cut(s)	549
NspI	RCATGY	3 cut(s)	333, 551, 827
PaqCI	CACCTGC	1 cut(s)	245
PciSI	GCTCTTC	2 cut(s)	342, 384
PctI	GAATGC	1 cut(s)	377
PfeI	GAWTC	1 cut(s)	613
PflFI	GACNNNGTC	1 cut(s)	572
PfoI	TCCNGGA	1 cut(s)	678
PkrI	GCNGC	6 cut(s)	69, 94, 433, 529, 726, 729
PleI	GAGTC	2 cut(s)	110, 295
PpsI	GAGTC	2 cut(s)	110, 295
Psp124BI	GAGCTC	1 cut(s)	354
Psp6I	CCWGG	3 cut(s)	147, 333, 678
PspGI	CCWGG	3 cut(s)	147, 333, 678
PspN4I	GGNNCC	1 cut(s)	37
PspPI	GGNCC	3 cut(s)	35, 58, 568
PsuI	RGATCY	1 cut(s)	804
PsyI	GACNNNGTC	1 cut(s)	572
RsaI	GTAC	1 cut(s)	281
RsaNI	GTAC	1 cut(s)	280
RseI	CAYNNNNRTG	2 cut(s)	546, 828
SacI	GAGCTC	1 cut(s)	354
SapI	GCTCTTC	2 cut(s)	342, 384
SaqAI	TTAA	2 cut(s)	768, 809
SatI	GCNGC	6 cut(s)	68, 93, 432, 528, 725, 728
Sau3AI	GATC	5 cut(s)	136, 307, 505, 710, 804
Sau96I	GGNCC	3 cut(s)	35, 58, 568
SchI	GAGTC	2 cut(s)	110, 296
ScrFI	CCNGG	4 cut(s)	33, 149, 335, 680
SduI	GDGCHC	1 cut(s)	354
SinI	GGWCC	1 cut(s)	568
SmiMI	CAYNNNNRTG	2 cut(s)	546, 828
SmlI	CTYRAG	2 cut(s)	353, 767
SmoI	CTYRAG	2 cut(s)	353, 767
Sse9I	AATT	8 cut(s)	71, 230, 410, 446, 459, 578, 742, 748
SsiI	CCGC	5 cut(s)	4, 28, 92, 170, 192
SspMI	CTAG	1 cut(s)	838
SstI	GAGCTC	1 cut(s)	354
StyD4I	CCNGG	4 cut(s)	31, 147, 333, 678
StyI	CCWWGG	2 cut(s)	435, 511
TaaI	ACNGT	2 cut(s)	428, 632
TaqI	TCGA	2 cut(s)	315, 642
TaqII	GACCGA	1 cut(s)	116
TasI	AATT	8 cut(s)	71, 230, 410, 446, 459, 578, 742, 748
TatI	WGTACW	1 cut(s)	279
TauI	GCSGC	1 cut(s)	95
TfiI	GAWTC	1 cut(s)	613
Tru1I	TTAA	2 cut(s)	768, 809
Tru9I	TTAA	2 cut(s)	768, 809
TscAI	CASTG	1 cut(s)	136
TseI	GCWGC	5 cut(s)	67, 431, 527, 724, 727
TspDTI	ATGAA	3 cut(s)	384, 507, 797
TspRI	CASTG	1 cut(s)	136
Tth111I	GACNNNGTC	1 cut(s)	572
Vha464I	CTTAAG	1 cut(s)	767
VpaK11BI	GGWCC	1 cut(s)	568
XagI	CCTNNNNNAGG	1 cut(s)	515
XapI	RAATTY	2 cut(s)	230, 742
XceI	RCATGY	3 cut(s)	333, 551, 827
XspI	CTAG	1 cut(s)	838
Zsp2I	ATGCAT	1 cut(s)	549

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.