Basic Information

Type: gene

Biological Identity

Species

rosa_multiflora

Chromosome

Rmu_sc0024868.1

Orthogroup ID

OG0004071

Physical Location & Seq

Genomic Coordinates Reverse (-)

2 .. 1994

Gene Structure 1993 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

Rmu_sc0024868.1_g000001.1.cds

Sequence Viewer

CDS Protein Promoter (2k)

Length: 663 bp

atgcggggaggaggtgttttgggggaggtggggtgtcttgtcggcgtgctggcaatgcaggcgggggggatggtcgtccgatgtctactcgtggcggtggctagggtctcatcaacgtggaaaaaggcccaattgcagcaattgaggacagaaagaatggcggcaacgaccgacgaagaaatggactctctcctctccactgtcgatcaaatctaccaggatttcaaggacggcgtagcggaaatccaatcggtgaaatccgcctgcaatgccgaggcgaagaggcgagaagctcttgaattcacctgcaacaatctcaaacaagagaatgagcgattgacgagaatgtacacggagtctctgaacgaccttgctgatcagctcgaacggcgtagcacatgccagggcttgaaggaagagctcaagagagttagggatgaatgccttggtaaagaagatgagcataggaaggctatggaattggtcaagcaagactgtgcagccaaggttgaggaattggaggctcaaattagagggtttcttgtggaaaaggcgaaaaatgaagcaaccattgatcaccttcgacaggatttagctgcacataagtcccatatgcatgttatgcaaagcagattggaccaagtccaattggatgtggaaaca

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0005575 GO:0005622 GO:0005623 GO:0005737 GO:0005783 GO:0005911 GO:0006810 GO:0008150 GO:0009506 GO:0009987 GO:0010496 GO:0012505 GO:0030054 GO:0043226 GO:0043227 GO:0043229 GO:0043231 GO:0044424 GO:0044444 GO:0044464 GO:0046907 GO:0051179 GO:0051234 GO:0051641 GO:0051649 GO:0055044

KEGG Pathways

Metabolic & Signaling

No pathways identified.

Pfam Domains

Protein Families

No domains found.

Protein Analysis

221

Amino Acids

24.91

Weight (kDa)

5.52

Isoelectric Point (pI)

49.96

Instability Index

Protein Domains (Pfam)

No Pfam domains detected for this protein.

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

Style Settings

Font Size (px)

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Align Labels (Cladogram)

Image

Tree File

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Publication-ready

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Orthologous Genes (Group: OG0004071)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT4G26020 AT4G26020 AT4G26020
fragaria_vesca	FvH4_4g07070 FvH4_4g07070 FvH4_4g07070 FvH4_4g07070 FvH4_4g07070 FvH4_4g07070 FvH4_4g07070 FvH4_4g07070 FvH4_4g07070 FvH4_4g07070 FvH4_4g07070
malus_domestica	MD16G1247400.v1.1
prunus_persica	Prupe.1G073900_v2.0.a1 Prupe.1G073900_v2.0.a1 Prupe.1G073900_v2.0.a1 Prupe.1G073900_v2.0.a1
pyrus_communis	pycom16g20770
rosa_chinensis	RchiOBHm_Chr4g0399191
rosa_laevigata	RLG00000009291
rosa_multiflora	Rmu_sc0002582.1_g000003 Rmu_sc0024868.1_g000001
rosa_roxburghii	Rroxscaffold_5G00344150
rosa_rugosa	Rorug04G0014800 Rorug04G0014900 Rorug04G0015000
rosa_samantha	Rh4AG092900 Rh4BG090700 Rh4CG101300 Rh4DG085200
rosa_wichuraiana	Rw4G007650

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AarI	CACCTGC	1 cut(s)	314
Acc36I	ACCTGC	1 cut(s)	314
AccI	GTMKAC	1 cut(s)	85
AciI	CCGC	6 cut(s)	4, 62, 95, 161, 239, 261
AcsI	RAATTY	1 cut(s)	299
AfaI	GTAC	1 cut(s)	350
AfiI	CCNNNNNNNGG	1 cut(s)	586
AgsI	TTSAA	3 cut(s)	226, 299, 412
AjnI	CCWGG	2 cut(s)	216, 402
AluBI	AGCT	4 cut(s)	293, 382, 421, 596
AluI	AGCT	4 cut(s)	293, 382, 421, 596
Alw21I	GWGCWC	1 cut(s)	423
Alw26I	GTCTC	2 cut(s)	112, 363
AoxI	GGCC	1 cut(s)	126
ApeKI	GCWGC	3 cut(s)	136, 500, 596
ApoI	RAATTY	1 cut(s)	299
AspS9I	GGNCC	2 cut(s)	127, 637
AsuHPI	GGTGA	3 cut(s)	265, 295, 569
AvaII	GGWCC	1 cut(s)	637
BanII	GRGCYC	1 cut(s)	423
BauI	CACGAG	1 cut(s)	89
Bbv12I	GWGCWC	1 cut(s)	423
BbvI	GCAGC	3 cut(s)	148, 512, 583
BccI	CCATC	1 cut(s)	64
BceAI	ACGGC	2 cut(s)	247, 404
BciT130I	CCWGG	2 cut(s)	218, 404
BclI	TGATCA	2 cut(s)	376, 574
BcoDI	GTCTC	2 cut(s)	112, 363
BfaI	CTAG	1 cut(s)	102
BfuAI	ACCTGC	1 cut(s)	314
BisI	GCNGC	4 cut(s)	137, 162, 501, 597
BlsI	GCNGC	4 cut(s)	138, 163, 502, 598
Bme1390I	CCNGG	2 cut(s)	218, 404
Bme18I	GGWCC	1 cut(s)	637
BmgT120I	GGNCC	2 cut(s)	127, 637
BmrFI	CCNGG	2 cut(s)	218, 404
BpuEI	CTTGAG	1 cut(s)	407
BsaI	GGTCTC	1 cut(s)	112
BsaJI	CCNNGG	4 cut(s)	273, 403, 445, 504
BsaXI	ACNNNNNCTCC	3 cut(s)	17, 30, 47
Bsc4I	CCNNNNNNNGG	1 cut(s)	586
Bse3DI	GCAATG	2 cut(s)	60, 274
BseBI	CCWGG	2 cut(s)	218, 404
BseDI	CCNNGG	4 cut(s)	273, 403, 445, 504
BseGI	GGATG	3 cut(s)	75, 442, 658
BseLI	CCNNNNNNNGG	1 cut(s)	586
BseMI	GCAATG	2 cut(s)	60, 274
BseRI	GAGGAG	2 cut(s)	24, 182
BseXI	GCAGC	3 cut(s)	148, 512, 583
BsgI	GTGCAG	2 cut(s)	519, 582
Bsh1285I	CGRYCG	1 cut(s)	171
BshFI	GGCC	1 cut(s)	128
BsiEI	CGRYCG	1 cut(s)	171
BsiHKAI	GWGCWC	1 cut(s)	423
BslFI	GGGAC	1 cut(s)	592
BslI	CCNNNNNNNGG	1 cut(s)	586
BsmAI	GTCTC	2 cut(s)	112, 363
BsmFI	GGGAC	1 cut(s)	592
BsmI	GAATGC	1 cut(s)	446
BsnI	GGCC	1 cut(s)	128
Bso31I	GGTCTC	1 cut(s)	112
Bsp1286I	GDGCHC	1 cut(s)	423
Bsp1407I	TGTACA	1 cut(s)	348
Bsp143I	GATC	3 cut(s)	205, 376, 574
BspACI	CCGC	6 cut(s)	4, 62, 95, 161, 239, 261
BspANI	GGCC	1 cut(s)	128
BspMI	ACCTGC	1 cut(s)	314
BspQI	GCTCTTC	1 cut(s)	411
BspTNI	GGTCTC	1 cut(s)	112
BsrDI	GCAATG	2 cut(s)	60, 274
BsrGI	TGTACA	1 cut(s)	348
BssECI	CCNNGG	4 cut(s)	273, 403, 445, 504
BssMI	GATC	3 cut(s)	205, 376, 574
BssSI	CACGAG	1 cut(s)	89
BssT1I	CCWWGG	2 cut(s)	445, 504
Bst2BI	CACGAG	1 cut(s)	89
Bst2UI	CCWGG	2 cut(s)	218, 404
Bst4CI	ACNGT	2 cut(s)	202, 497
Bst6I	CTCTTC	2 cut(s)	275, 411
BstAPI	GCANNNNNTGC	1 cut(s)	622
BstAUI	TGTACA	1 cut(s)	348
BstC8I	GCNNGC	4 cut(s)	47, 51, 60, 265
BstENI	CCTNNNNNAGG	1 cut(s)	584
BstF5I	GGATG	3 cut(s)	75, 442, 658
BstKTI	GATC	3 cut(s)	208, 379, 577
BstMAI	GTCTC	2 cut(s)	112, 363
BstMBI	GATC	3 cut(s)	205, 376, 574
BstMCI	CGRYCG	1 cut(s)	171
BstMWI	GCNNNNNNNGC	5 cut(s)	55, 59, 269, 388, 622
BstNI	CCWGG	2 cut(s)	218, 404
BstNSI	RCATGY	2 cut(s)	402, 620
BstSCI	CCNGG	2 cut(s)	216, 402
BstV1I	GCAGC	3 cut(s)	148, 512, 583
BsuRI	GGCC	1 cut(s)	128
BtsCI	GGATG	3 cut(s)	75, 442, 658
BtsIMutI	CAGTG	1 cut(s)	198
BveI	ACCTGC	1 cut(s)	314
Cac8I	GCNNGC	4 cut(s)	47, 51, 60, 265
Cfr13I	GGNCC	2 cut(s)	127, 637
Csp6I	GTAC	1 cut(s)	349
CviAII	CATG	2 cut(s)	399, 617
CviQI	GTAC	1 cut(s)	349
DpnI	GATC	3 cut(s)	207, 378, 576
DpnII	GATC	3 cut(s)	205, 376, 574
Eam1104I	CTCTTC	2 cut(s)	275, 411
EarI	CTCTTC	2 cut(s)	275, 411
EciI	GGCGGA	1 cut(s)	250
Ecl136II	GAGCTC	1 cut(s)	421
Eco130I	CCWWGG	2 cut(s)	445, 504
Eco24I	GRGCYC	1 cut(s)	423
Eco31I	GGTCTC	1 cut(s)	112
Eco47I	GGWCC	1 cut(s)	637
Eco53kI	GAGCTC	1 cut(s)	421
EcoICRI	GAGCTC	1 cut(s)	421
EcoNI	CCTNNNNNAGG	1 cut(s)	584
EcoRI	GAATTC	1 cut(s)	299
EcoRII	CCWGG	2 cut(s)	216, 402
EcoT14I	CCWWGG	2 cut(s)	445, 504
EcoT22I	ATGCAT	1 cut(s)	618
EcoT38I	GRGCYC	1 cut(s)	423
ErhI	CCWWGG	2 cut(s)	445, 504
FaeI	CATG	2 cut(s)	402, 620
FaiI	YATR	8 cut(s)	400, 465, 476, 603, 612, 614, 618, 623
FaqI	GGGAC	1 cut(s)	592
FatI	CATG	2 cut(s)	398, 616
FauI	CCCGC	1 cut(s)	55
FauNDI	CATATG	1 cut(s)	612
FbaI	TGATCA	2 cut(s)	376, 574
FblI	GTMKAC	1 cut(s)	85
Fnu4HI	GCNGC	4 cut(s)	137, 162, 501, 597
FokI	GGATG	2 cut(s)	82, 449
FriOI	GRGCYC	1 cut(s)	423
Fsp4HI	GCNGC	4 cut(s)	137, 162, 501, 597
FspBI	CTAG	1 cut(s)	102
GluI	GCNGC	4 cut(s)	137, 162, 501, 597
HaeIII	GGCC	1 cut(s)	128
Hin1II	CATG	2 cut(s)	402, 620
HinfI	GANTC	2 cut(s)	185, 356
HphI	GGTGA	3 cut(s)	265, 295, 569
Hpy166II	GTNNAC	2 cut(s)	86, 351
Hpy188I	TCNGA	2 cut(s)	80, 363
Hpy188III	TCNNGA	2 cut(s)	296, 424
Hpy8I	GTNNAC	2 cut(s)	86, 351
Hpy99I	CGWCG	1 cut(s)	176
HpyAV	CCTTC	3 cut(s)	406, 463, 590
HpyCH4III	ACNGT	2 cut(s)	202, 497
HpyCH4IV	ACGT	1 cut(s)	116
HpyCH4V	TGCA	8 cut(s)	58, 136, 267, 309, 500, 599, 616, 625
HpyF10VI	GCNNNNNNNGC	5 cut(s)	55, 59, 269, 388, 622
HpySE526I	ACGT	1 cut(s)	116
Hsp92II	CATG	2 cut(s)	402, 620
Ksp22I	TGATCA	2 cut(s)	376, 574
Kzo9I	GATC	3 cut(s)	205, 376, 574
LguI	GCTCTTC	1 cut(s)	411
LpnPI	CCDG	9 cut(s)	35, 44, 203, 230, 277, 319, 389, 416, 572
Lsp1109I	GCAGC	3 cut(s)	148, 512, 583
MaeI	CTAG	1 cut(s)	102
MaeII	ACGT	1 cut(s)	116
MalI	GATC	3 cut(s)	207, 378, 576
MboI	GATC	3 cut(s)	205, 376, 574
MboII	GAAGA	4 cut(s)	188, 292, 428, 467
MfeI	CAATTG	3 cut(s)	131, 140, 647
MhlI	GDGCHC	1 cut(s)	423
MluCI	AATT	7 cut(s)	131, 140, 299, 479, 515, 528, 647
MlyI	GAGTC	2 cut(s)	179, 365
MnlI	CCTC	9 cut(s)	5, 19, 138, 203, 268, 276, 505, 514, 527
Mph1103I	ATGCAT	1 cut(s)	618
MslI	CAYNNNNRTG	2 cut(s)	115, 615
MspR9I	CCNGG	2 cut(s)	218, 404
MunI	CAATTG	3 cut(s)	131, 140, 647
Mva1269I	GAATGC	1 cut(s)	446
MvaI	CCWGG	2 cut(s)	218, 404
MwoI	GCNNNNNNNGC	5 cut(s)	55, 59, 269, 388, 622
NdeI	CATATG	1 cut(s)	612
NdeII	GATC	3 cut(s)	205, 376, 574
NlaIII	CATG	2 cut(s)	402, 620
NmeAIII	GCCGAG	1 cut(s)	298
NsiI	ATGCAT	1 cut(s)	618
NspI	RCATGY	2 cut(s)	402, 620
PaqCI	CACCTGC	1 cut(s)	314
PciSI	GCTCTTC	1 cut(s)	411
PctI	GAATGC	1 cut(s)	446
PflFI	GACNNNGTC	1 cut(s)	641
PkrI	GCNGC	4 cut(s)	138, 163, 502, 598
PleI	GAGTC	2 cut(s)	179, 364
PpsI	GAGTC	2 cut(s)	179, 364
Psp124BI	GAGCTC	1 cut(s)	423
Psp6I	CCWGG	2 cut(s)	216, 402
PspGI	CCWGG	2 cut(s)	216, 402
PspPI	GGNCC	2 cut(s)	127, 637
PsyI	GACNNNGTC	1 cut(s)	641
RsaI	GTAC	1 cut(s)	350
RsaNI	GTAC	1 cut(s)	349
RseI	CAYNNNNRTG	2 cut(s)	115, 615
SacI	GAGCTC	1 cut(s)	423
SapI	GCTCTTC	1 cut(s)	411
SatI	GCNGC	4 cut(s)	137, 162, 501, 597
Sau3AI	GATC	3 cut(s)	205, 376, 574
Sau96I	GGNCC	2 cut(s)	127, 637
SchI	GAGTC	2 cut(s)	179, 365
ScrFI	CCNGG	2 cut(s)	218, 404
SduI	GDGCHC	1 cut(s)	423
SinI	GGWCC	1 cut(s)	637
SmiMI	CAYNNNNRTG	2 cut(s)	115, 615
SmlI	CTYRAG	1 cut(s)	422
SmoI	CTYRAG	1 cut(s)	422
Sse9I	AATT	7 cut(s)	131, 140, 299, 479, 515, 528, 647
SsiI	CCGC	6 cut(s)	4, 62, 95, 161, 239, 261
SspMI	CTAG	1 cut(s)	102
SstI	GAGCTC	1 cut(s)	423
StyD4I	CCNGG	2 cut(s)	216, 402
StyI	CCWWGG	2 cut(s)	445, 504
TaaI	ACNGT	2 cut(s)	202, 497
TaiI	ACGT	1 cut(s)	119
TaqI	TCGA	3 cut(s)	204, 384, 583
TaqII	GACCGA	1 cut(s)	185
TasI	AATT	7 cut(s)	131, 140, 299, 479, 515, 528, 647
TatI	WGTACW	1 cut(s)	348
TauI	GCSGC	1 cut(s)	164
TscAI	CASTG	1 cut(s)	205
TseI	GCWGC	3 cut(s)	136, 500, 596
TspDTI	ATGAA	2 cut(s)	453, 576
TspGWI	ACGGA	1 cut(s)	368
TspRI	CASTG	1 cut(s)	205
Tth111I	GACNNNGTC	1 cut(s)	641
VpaK11BI	GGWCC	1 cut(s)	637
XagI	CCTNNNNNAGG	1 cut(s)	584
XapI	RAATTY	1 cut(s)	299
XceI	RCATGY	2 cut(s)	402, 620
XmiI	GTMKAC	1 cut(s)	85
XspI	CTAG	1 cut(s)	102
Zsp2I	ATGCAT	1 cut(s)	618

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.