Basic Information

Type: gene

Biological Identity

Species

rosa_roxburghii

Chromosome

GWHEROQ00000005

Orthogroup ID

OG0004071

Physical Location & Seq

Genomic Coordinates Reverse (-)

14119295 .. 14121177

Gene Structure 1883 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

Rroxscaffold_5G00344150.1

Sequence Viewer

CDS Protein Promoter (2k)

Length: 753 bp

ATGGCGGCAACGACCGACGAAGAAATGGACTCTCTCCTCTCCACCGTCGATCAAATCTACCAGGATTTCAAGGACGGCGCAGCGGAAATCCAATCGGTGAAATCCACGTGCAATGCCGAGGCGAAGAAGCGAGAGGCTCTTGAATTCACCTGCAACAATCTCAAACGAGAGAATGAGCGATTGACGAGAATGTACACCGAGTCTCTGAACGACCTGGCTGATCAGCTCGAACGGCGTAGCACATGCCAGGGCTTGAAAGAAGAGCTCAAGCGAGTTAGGGATGAATGCCTCAGTAAAGAAGAAGAGCATAGGAAGGCTATGGAATTGGTCAAGCAAGACTGTGCAGCCAAGGTTGAGGAATTGGAGGCTCAAATTAGAGGGTTTCTTGTGGAAAAGGCGAAAAATAAAGCAACCATTGATCACCTTCTACAGGATTTAGCTGCACATAAGTCCCATATGCATGTTATGCAAAGCAGATTGGGCCAAGTCCAATTGGATGTGGAAACAAAATCAGATGTTTTTGAGATTCAGGATTTGAAGGACTGTATCGCAATCGAACAGGAGGAGAAAAATGAGTTGAATAGAAAACTCCAGGATTTAGAAAAAGAAATGCTGGTTAGCAGATCAAAGCTTGTGCAACAGCAACAAGATTCGAATTCAAATTGGCAGGTTGAAACACTTAAGACCAAACTTATGAAGCTGAGGAAGGAGAATGAGATCTTAAAGCGCAAACTACATTCAGATGAGGGCTAG

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0005575 GO:0005622 GO:0005623 GO:0005737 GO:0005783 GO:0005911 GO:0006810 GO:0008150 GO:0009506 GO:0009987 GO:0010496 GO:0012505 GO:0030054 GO:0043226 GO:0043227 GO:0043229 GO:0043231 GO:0044424 GO:0044444 GO:0044464 GO:0046907 GO:0051179 GO:0051234 GO:0051641 GO:0051649 GO:0055044

KEGG Pathways

Metabolic & Signaling

No pathways identified.

Pfam Domains

Protein Families

No domains found.

Protein Analysis

250

Amino Acids

29.04

Weight (kDa)

5.39

Isoelectric Point (pI)

53.31

Instability Index

Protein Domains (Pfam)

No Pfam domains detected for this protein.

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

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Align Labels (Cladogram)

Image

Tree File

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Publication-ready

iTOL Interactive Tree Of Life · Most popular EvolView Flexible annotations MEGA Desktop phylogenetics suite FigTree Desktop tree editor

Orthologous Genes (Group: OG0004071)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT4G26020 AT4G26020 AT4G26020
fragaria_vesca	FvH4_4g07070 FvH4_4g07070 FvH4_4g07070 FvH4_4g07070 FvH4_4g07070 FvH4_4g07070 FvH4_4g07070 FvH4_4g07070 FvH4_4g07070 FvH4_4g07070 FvH4_4g07070
malus_domestica	MD16G1247400.v1.1
prunus_persica	Prupe.1G073900_v2.0.a1 Prupe.1G073900_v2.0.a1 Prupe.1G073900_v2.0.a1 Prupe.1G073900_v2.0.a1
pyrus_communis	pycom16g20770
rosa_chinensis	RchiOBHm_Chr4g0399191
rosa_laevigata	RLG00000009291
rosa_multiflora	Rmu_sc0002582.1_g000003 Rmu_sc0024868.1_g000001
rosa_roxburghii	Rroxscaffold_5G00344150
rosa_rugosa	Rorug04G0014800 Rorug04G0014900 Rorug04G0015000
rosa_samantha	Rh4AG092900 Rh4BG090700 Rh4CG101300 Rh4DG085200
rosa_wichuraiana	Rw4G007650

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AarI	CACCTGC	1 cut(s)	158
Acc36I	ACCTGC	2 cut(s)	158, 658
AciI	CCGC	2 cut(s)	5, 83
AcsI	RAATTY	2 cut(s)	143, 655
AcvI	CACGTG	1 cut(s)	108
AfaI	GTAC	1 cut(s)	194
AfiI	CCNNNNNNNGG	1 cut(s)	430
AflII	CTTAAG	1 cut(s)	680
AgsI	TTSAA	7 cut(s)	70, 143, 256, 538, 580, 660, 674
AjnI	CCWGG	4 cut(s)	60, 213, 246, 591
AluBI	AGCT	5 cut(s)	226, 265, 440, 631, 700
AluI	AGCT	5 cut(s)	226, 265, 440, 631, 700
Alw21I	GWGCWC	1 cut(s)	267
Alw26I	GTCTC	1 cut(s)	207
AoxI	GGCC	1 cut(s)	481
ApeKI	GCWGC	3 cut(s)	80, 344, 440
ApoI	RAATTY	2 cut(s)	143, 655
AspLEI	GCGC	2 cut(s)	80, 729
AspS9I	GGNCC	1 cut(s)	481
AsuHPI	GGTGA	3 cut(s)	109, 139, 413
AsuII	TTCGAA	1 cut(s)	653
BanII	GRGCYC	1 cut(s)	267
BbrPI	CACGTG	1 cut(s)	108
Bbv12I	GWGCWC	1 cut(s)	267
BbvCI	CCTCAGC	1 cut(s)	701
BbvI	GCAGC	3 cut(s)	92, 356, 427
BceAI	ACGGC	2 cut(s)	91, 248
BciT130I	CCWGG	4 cut(s)	62, 215, 248, 593
BclI	TGATCA	2 cut(s)	220, 418
BcoDI	GTCTC	1 cut(s)	207
BfaI	CTAG	1 cut(s)	751
BfmI	CTRYAG	1 cut(s)	428
BfrI	CTTAAG	1 cut(s)	680
BfuAI	ACCTGC	2 cut(s)	158, 658
BglII	AGATCT	1 cut(s)	717
BisI	GCNGC	4 cut(s)	6, 81, 345, 441
BlsI	GCNGC	4 cut(s)	7, 82, 346, 442
Bme1390I	CCNGG	4 cut(s)	62, 215, 248, 593
BmgT120I	GGNCC	1 cut(s)	481
BmrFI	CCNGG	4 cut(s)	62, 215, 248, 593
BpmI	CTGGAG	1 cut(s)	575
Bpu10I	CCTNAGC	1 cut(s)	701
Bpu14I	TTCGAA	1 cut(s)	653
BpuEI	CTTGAG	1 cut(s)	251
BsaAI	YACGTR	1 cut(s)	108
BsaJI	CCNNGG	3 cut(s)	117, 247, 348
Bsc4I	CCNNNNNNNGG	1 cut(s)	430
Bse3DI	GCAATG	1 cut(s)	118
BseBI	CCWGG	4 cut(s)	62, 215, 248, 593
BseDI	CCNNGG	3 cut(s)	117, 247, 348
BseGI	GGATG	2 cut(s)	286, 502
BseLI	CCNNNNNNNGG	1 cut(s)	430
BseMI	GCAATG	1 cut(s)	118
BseMII	CTCAG	2 cut(s)	304, 692
BseRI	GAGGAG	2 cut(s)	26, 578
BseXI	GCAGC	3 cut(s)	92, 356, 427
BsgI	GTGCAG	2 cut(s)	363, 426
Bsh1285I	CGRYCG	1 cut(s)	15
BshFI	GGCC	1 cut(s)	483
BsiEI	CGRYCG	1 cut(s)	15
BsiHKAI	GWGCWC	1 cut(s)	267
BslFI	GGGAC	1 cut(s)	436
BslI	CCNNNNNNNGG	1 cut(s)	430
BsmAI	GTCTC	1 cut(s)	207
BsmFI	GGGAC	1 cut(s)	436
BsmI	GAATGC	1 cut(s)	290
BsnI	GGCC	1 cut(s)	483
Bsp119I	TTCGAA	1 cut(s)	653
Bsp1286I	GDGCHC	1 cut(s)	267
Bsp1407I	TGTACA	1 cut(s)	192
Bsp143I	GATC	5 cut(s)	49, 220, 418, 623, 717
BspACI	CCGC	2 cut(s)	5, 83
BspANI	GGCC	1 cut(s)	483
BspCNI	CTCAG	2 cut(s)	303, 693
BspMI	ACCTGC	2 cut(s)	158, 658
BspQI	GCTCTTC	2 cut(s)	255, 297
BspT104I	TTCGAA	1 cut(s)	653
BspTI	CTTAAG	1 cut(s)	680
BsrDI	GCAATG	1 cut(s)	118
BsrGI	TGTACA	1 cut(s)	192
BssECI	CCNNGG	3 cut(s)	117, 247, 348
BssMI	GATC	5 cut(s)	49, 220, 418, 623, 717
BssT1I	CCWWGG	1 cut(s)	348
Bst2UI	CCWGG	4 cut(s)	62, 215, 248, 593
Bst4CI	ACNGT	3 cut(s)	46, 341, 545
Bst6I	CTCTTC	2 cut(s)	255, 297
BstAFI	CTTAAG	1 cut(s)	680
BstAPI	GCANNNNNTGC	1 cut(s)	466
BstAUI	TGTACA	1 cut(s)	192
BstBAI	YACGTR	1 cut(s)	108
BstBI	TTCGAA	1 cut(s)	653
BstDEI	CTNAG	2 cut(s)	290, 701
BstENI	CCTNNNNNAGG	1 cut(s)	428
BstF5I	GGATG	2 cut(s)	286, 502
BstHHI	GCGC	2 cut(s)	80, 729
BstKTI	GATC	5 cut(s)	52, 223, 421, 626, 720
BstMAI	GTCTC	1 cut(s)	207
BstMBI	GATC	5 cut(s)	49, 220, 418, 623, 717
BstMCI	CGRYCG	1 cut(s)	15
BstMWI	GCNNNNNNNGC	3 cut(s)	232, 466, 480
BstNI	CCWGG	4 cut(s)	62, 215, 248, 593
BstNSI	RCATGY	2 cut(s)	246, 464
BstSCI	CCNGG	4 cut(s)	60, 213, 246, 591
BstSFI	CTRYAG	1 cut(s)	428
BstV1I	GCAGC	3 cut(s)	92, 356, 427
BstX2I	RGATCY	1 cut(s)	717
BstYI	RGATCY	1 cut(s)	717
BsuRI	GGCC	1 cut(s)	483
BtsCI	GGATG	2 cut(s)	286, 502
BveI	ACCTGC	2 cut(s)	158, 658
CfoI	GCGC	2 cut(s)	80, 729
Cfr13I	GGNCC	1 cut(s)	481
Csp6I	GTAC	1 cut(s)	193
CviAII	CATG	2 cut(s)	243, 461
CviQI	GTAC	1 cut(s)	193
DdeI	CTNAG	2 cut(s)	290, 701
DpnI	GATC	5 cut(s)	51, 222, 420, 625, 719
DpnII	GATC	5 cut(s)	49, 220, 418, 623, 717
Eam1104I	CTCTTC	2 cut(s)	255, 297
EarI	CTCTTC	2 cut(s)	255, 297
Ecl136II	GAGCTC	1 cut(s)	265
Eco130I	CCWWGG	1 cut(s)	348
Eco24I	GRGCYC	1 cut(s)	267
Eco53kI	GAGCTC	1 cut(s)	265
Eco72I	CACGTG	1 cut(s)	108
EcoICRI	GAGCTC	1 cut(s)	265
EcoNI	CCTNNNNNAGG	1 cut(s)	428
EcoRI	GAATTC	2 cut(s)	143, 655
EcoRII	CCWGG	4 cut(s)	60, 213, 246, 591
EcoT14I	CCWWGG	1 cut(s)	348
EcoT22I	ATGCAT	1 cut(s)	462
EcoT38I	GRGCYC	1 cut(s)	267
ErhI	CCWWGG	1 cut(s)	348
FaeI	CATG	2 cut(s)	246, 464
FaiI	YATR	9 cut(s)	244, 309, 320, 447, 456, 458, 462, 467, 695
FaqI	GGGAC	1 cut(s)	436
FatI	CATG	2 cut(s)	242, 460
FauNDI	CATATG	1 cut(s)	456
FbaI	TGATCA	2 cut(s)	220, 418
Fnu4HI	GCNGC	4 cut(s)	6, 81, 345, 441
FokI	GGATG	2 cut(s)	293, 509
FriOI	GRGCYC	1 cut(s)	267
Fsp4HI	GCNGC	4 cut(s)	6, 81, 345, 441
FspBI	CTAG	1 cut(s)	751
GlaI	GCGC	2 cut(s)	79, 728
GluI	GCNGC	4 cut(s)	6, 81, 345, 441
GsuI	CTGGAG	1 cut(s)	575
HaeIII	GGCC	1 cut(s)	483
HhaI	GCGC	2 cut(s)	80, 729
Hin1II	CATG	2 cut(s)	246, 464
Hin6I	GCGC	2 cut(s)	78, 727
HinP1I	GCGC	2 cut(s)	78, 727
HindIII	AAGCTT	1 cut(s)	629
HinfI	GANTC	4 cut(s)	29, 200, 526, 650
HphI	GGTGA	3 cut(s)	109, 139, 413
Hpy166II	GTNNAC	1 cut(s)	195
Hpy188I	TCNGA	3 cut(s)	207, 514, 742
Hpy188III	TCNNGA	2 cut(s)	140, 530
Hpy8I	GTNNAC	1 cut(s)	195
Hpy99I	CGWCG	2 cut(s)	20, 50
HpyAV	CCTTC	4 cut(s)	307, 434, 532, 700
HpyCH4III	ACNGT	3 cut(s)	46, 341, 545
HpyCH4IV	ACGT	1 cut(s)	107
HpyCH4V	TGCA	7 cut(s)	111, 153, 344, 443, 460, 469, 637
HpyF10VI	GCNNNNNNNGC	3 cut(s)	232, 466, 480
HpyF3I	CTNAG	2 cut(s)	290, 701
HpySE526I	ACGT	1 cut(s)	107
Hsp92II	CATG	2 cut(s)	246, 464
HspAI	GCGC	2 cut(s)	78, 727
Ksp22I	TGATCA	2 cut(s)	220, 418
Kzo9I	GATC	5 cut(s)	49, 220, 418, 623, 717
LguI	GCTCTTC	2 cut(s)	255, 297
Lsp1109I	GCAGC	3 cut(s)	92, 356, 427
MaeI	CTAG	1 cut(s)	751
MaeII	ACGT	1 cut(s)	107
MalI	GATC	5 cut(s)	51, 222, 420, 625, 719
MboI	GATC	5 cut(s)	49, 220, 418, 623, 717
MboII	GAAGA	5 cut(s)	32, 136, 272, 311, 314
MfeI	CAATTG	1 cut(s)	491
MflI	RGATCY	1 cut(s)	717
MhlI	GDGCHC	1 cut(s)	267
MluCI	AATT	7 cut(s)	143, 323, 359, 372, 491, 655, 661
MlyI	GAGTC	2 cut(s)	23, 209
Mph1103I	ATGCAT	1 cut(s)	462
MseI	TTAA	2 cut(s)	681, 722
MslI	CAYNNNNRTG	2 cut(s)	459, 741
MspA1I	CMGCKG	1 cut(s)	83
MspCI	CTTAAG	1 cut(s)	680
MspR9I	CCNGG	4 cut(s)	62, 215, 248, 593
MunI	CAATTG	1 cut(s)	491
Mva1269I	GAATGC	1 cut(s)	290
MvaI	CCWGG	4 cut(s)	62, 215, 248, 593
MwoI	GCNNNNNNNGC	3 cut(s)	232, 466, 480
NdeI	CATATG	1 cut(s)	456
NdeII	GATC	5 cut(s)	49, 220, 418, 623, 717
NlaIII	CATG	2 cut(s)	246, 464
NmeAIII	GCCGAG	1 cut(s)	142
NsiI	ATGCAT	1 cut(s)	462
NspI	RCATGY	2 cut(s)	246, 464
NspV	TTCGAA	1 cut(s)	653
PaqCI	CACCTGC	1 cut(s)	158
PciSI	GCTCTTC	2 cut(s)	255, 297
PctI	GAATGC	1 cut(s)	290
PfeI	GAWTC	2 cut(s)	526, 650
PfoI	TCCNGGA	1 cut(s)	591
PkrI	GCNGC	4 cut(s)	7, 82, 346, 442
PleI	GAGTC	2 cut(s)	23, 208
PmaCI	CACGTG	1 cut(s)	108
PmlI	CACGTG	1 cut(s)	108
PpsI	GAGTC	2 cut(s)	23, 208
Ppu21I	YACGTR	1 cut(s)	108
Psp124BI	GAGCTC	1 cut(s)	267
Psp6I	CCWGG	4 cut(s)	60, 213, 246, 591
PspCI	CACGTG	1 cut(s)	108
PspGI	CCWGG	4 cut(s)	60, 213, 246, 591
PspPI	GGNCC	1 cut(s)	481
PsuI	RGATCY	1 cut(s)	717
RsaI	GTAC	1 cut(s)	194
RsaNI	GTAC	1 cut(s)	193
RseI	CAYNNNNRTG	2 cut(s)	459, 741
SacI	GAGCTC	1 cut(s)	267
SapI	GCTCTTC	2 cut(s)	255, 297
SaqAI	TTAA	2 cut(s)	681, 722
SatI	GCNGC	4 cut(s)	6, 81, 345, 441
Sau3AI	GATC	5 cut(s)	49, 220, 418, 623, 717
Sau96I	GGNCC	1 cut(s)	481
SchI	GAGTC	2 cut(s)	23, 209
ScrFI	CCNGG	4 cut(s)	62, 215, 248, 593
SduI	GDGCHC	1 cut(s)	267
SfcI	CTRYAG	1 cut(s)	428
SfuI	TTCGAA	1 cut(s)	653
SmiMI	CAYNNNNRTG	2 cut(s)	459, 741
SmlI	CTYRAG	2 cut(s)	266, 680
SmoI	CTYRAG	2 cut(s)	266, 680
Sse9I	AATT	7 cut(s)	143, 323, 359, 372, 491, 655, 661
SsiI	CCGC	2 cut(s)	5, 83
SspMI	CTAG	1 cut(s)	751
SstI	GAGCTC	1 cut(s)	267
StyD4I	CCNGG	4 cut(s)	60, 213, 246, 591
StyI	CCWWGG	1 cut(s)	348
TaaI	ACNGT	3 cut(s)	46, 341, 545
TaiI	ACGT	1 cut(s)	110
TaqI	TCGA	4 cut(s)	48, 228, 555, 653
TaqII	GACCGA	1 cut(s)	29
TasI	AATT	7 cut(s)	143, 323, 359, 372, 491, 655, 661
TatI	WGTACW	1 cut(s)	192
TauI	GCSGC	1 cut(s)	8
TfiI	GAWTC	2 cut(s)	526, 650
Tru1I	TTAA	2 cut(s)	681, 722
Tru9I	TTAA	2 cut(s)	681, 722
TseI	GCWGC	3 cut(s)	80, 344, 440
TspDTI	ATGAA	2 cut(s)	297, 710
Vha464I	CTTAAG	1 cut(s)	680
XagI	CCTNNNNNAGG	1 cut(s)	428
XapI	RAATTY	2 cut(s)	143, 655
XceI	RCATGY	2 cut(s)	246, 464
XspI	CTAG	1 cut(s)	751
Zsp2I	ATGCAT	1 cut(s)	462

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.