Basic Information

Type: gene

Biological Identity

Species

fragaria_vesca

Chromosome

Fvb4

Orthogroup ID

OG0004071

Physical Location & Seq

Genomic Coordinates Reverse (-)

6472386 .. 6474757

Gene Structure 2372 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

FvH4_4g07070.t9

Sequence Viewer

CDS Protein Promoter (2k)

Length: 750 bp

ATGGCGGCAACCACAGACGAAGAAATGAACTTTCTCCTCTCCACCGCCGATCAAATCTACCAGGATTTCAAGAACGGCGTAGCGGAGATCCAATCGGTGAAGTCGGCGTGCAATGCCGAGGCGAAGAAGCGAGAGGCTCTTGAATTCACCTGCAACAATCTCAAACAAGAGAATGAGAGATTGATGAGAATGTACACCGAGTCGCTGAACGACCTTGCCGATCAGCTCGAACGGCGTAGCACGTGGCAGGGCTTGAAAGACGAGCTCCAGAGAATTAGGGATGAGGGTTTTGGTAAAGAAGAAGAGCATAGGAAGGCTATGGAGTTGGTCAAGCAAGAATGTGCGGCCAGGGTTGATGAATTGGAGGCTCAGATTAGAGGGTTTCTTGTTGAAAAGGTGAAAAATGAAGCAACCATTGATCACCTTCGACAGGATTTAGCTGCACATAAGTCCCATATGCATGCTATGGCAAGCAGGTTGGACCAAGTCCAGTTGGATGTGGAAACAAAATATGTTTTTGAGATTCAGGATTTGAGGGACTGTCTGGCAATCGAACAGGAGGAGAAACTGGAGTTGAACAGGAAGCTCCAGGATTTAGAGAAAGAAATGTTGGTTAGTAGATCAAAGCTTGTTCAACAGCAAGGAGATTCGAATTCAAATTGGCAGGTTGAAACACTAAAGGGCAAGCTTATGAAGCTGAGGAAGGAGAATGAGATCTTAAAGCGCAAACTACATTCAGTTGAGGGCTAG

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0005575 GO:0005622 GO:0005623 GO:0005737 GO:0005783 GO:0005911 GO:0006810 GO:0008150 GO:0009506 GO:0009987 GO:0010496 GO:0012505 GO:0030054 GO:0043226 GO:0043227 GO:0043229 GO:0043231 GO:0044424 GO:0044444 GO:0044464 GO:0046907 GO:0051179 GO:0051234 GO:0051641 GO:0051649 GO:0055044

KEGG Pathways

Metabolic & Signaling

No pathways identified.

Pfam Domains

Protein Families

No domains found.

Protein Analysis

250

Amino Acids

29.04

Weight (kDa)

5.38

Isoelectric Point (pI)

47.2

Instability Index

Protein Domains (Pfam)

No Pfam domains detected for this protein.

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

Style Settings

Font Size (px)

Line Width

Align Labels (Cladogram)

Image

Tree File

Tip: Beautify your tree with professional tools

Download the Full Tree (.nwk) file, then upload it to any of the following tools to customize colors, fonts, annotations, clades, and branch support.

Publication-ready

iTOL Interactive Tree Of Life · Most popular EvolView Flexible annotations MEGA Desktop phylogenetics suite FigTree Desktop tree editor

Orthologous Genes (Group: OG0004071)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT4G26020 AT4G26020 AT4G26020
fragaria_vesca	FvH4_4g07070 FvH4_4g07070 FvH4_4g07070 FvH4_4g07070 FvH4_4g07070 FvH4_4g07070 FvH4_4g07070 FvH4_4g07070 FvH4_4g07070 FvH4_4g07070 FvH4_4g07070
malus_domestica	MD16G1247400.v1.1
prunus_persica	Prupe.1G073900_v2.0.a1 Prupe.1G073900_v2.0.a1 Prupe.1G073900_v2.0.a1 Prupe.1G073900_v2.0.a1
pyrus_communis	pycom16g20770
rosa_chinensis	RchiOBHm_Chr4g0399191
rosa_laevigata	RLG00000009291
rosa_multiflora	Rmu_sc0002582.1_g000003 Rmu_sc0024868.1_g000001
rosa_roxburghii	Rroxscaffold_5G00344150
rosa_rugosa	Rorug04G0014800 Rorug04G0014900 Rorug04G0015000
rosa_samantha	Rh4AG092900 Rh4BG090700 Rh4CG101300 Rh4DG085200
rosa_wichuraiana	Rw4G007650

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AarI	CACCTGC	1 cut(s)	158
Acc36I	ACCTGC	3 cut(s)	158, 465, 655
AciI	CCGC	4 cut(s)	5, 45, 83, 344
AclWI	GGATC	1 cut(s)	82
AcoI	YGGCCR	1 cut(s)	345
AcsI	RAATTY	2 cut(s)	143, 652
AcvI	CACGTG	1 cut(s)	243
AfaI	GTAC	1 cut(s)	194
AfiI	CCNNNNNNNGG	1 cut(s)	430
AgsI	TTSAA	8 cut(s)	70, 143, 256, 392, 577, 635, 657, 671
AjnI	CCWGG	3 cut(s)	60, 347, 588
AjuI	GAANNNNNNNTTGG	2 cut(s)	593, 625
AluBI	AGCT	7 cut(s)	226, 265, 440, 586, 628, 688, 697
AluI	AGCT	7 cut(s)	226, 265, 440, 586, 628, 688, 697
Alw21I	GWGCWC	1 cut(s)	267
AlwI	GGATC	1 cut(s)	82
AoxI	GGCC	1 cut(s)	345
ApeKI	GCWGC	1 cut(s)	440
ApoI	RAATTY	2 cut(s)	143, 652
AspLEI	GCGC	1 cut(s)	726
AspS9I	GGNCC	1 cut(s)	481
AsuHPI	GGTGA	4 cut(s)	109, 139, 409, 413
AsuII	TTCGAA	1 cut(s)	650
AvaII	GGWCC	1 cut(s)	481
BanII	GRGCYC	1 cut(s)	267
BbrPI	CACGTG	1 cut(s)	243
Bbv12I	GWGCWC	1 cut(s)	267
BbvCI	CCTCAGC	1 cut(s)	698
BbvI	GCAGC	1 cut(s)	427
BceAI	ACGGC	2 cut(s)	91, 248
BciT130I	CCWGG	3 cut(s)	62, 349, 590
BclI	TGATCA	1 cut(s)	418
BfaI	CTAG	1 cut(s)	748
BfuAI	ACCTGC	3 cut(s)	158, 465, 655
BglII	AGATCT	1 cut(s)	714
BisI	GCNGC	3 cut(s)	6, 345, 441
BlsI	GCNGC	3 cut(s)	7, 346, 442
Bme1390I	CCNGG	3 cut(s)	62, 349, 590
Bme18I	GGWCC	1 cut(s)	481
BmgT120I	GGNCC	1 cut(s)	481
BmrFI	CCNGG	3 cut(s)	62, 349, 590
BpmI	CTGGAG	3 cut(s)	251, 572, 590
Bpu10I	CCTNAGC	1 cut(s)	698
Bpu14I	TTCGAA	1 cut(s)	650
BsaAI	YACGTR	1 cut(s)	243
BsaJI	CCNNGG	2 cut(s)	117, 348
Bsc4I	CCNNNNNNNGG	1 cut(s)	430
Bse1I	ACTGG	2 cut(s)	490, 573
Bse3DI	GCAATG	1 cut(s)	118
BseBI	CCWGG	3 cut(s)	62, 349, 590
BseDI	CCNNGG	2 cut(s)	117, 348
BseGI	GGATG	2 cut(s)	286, 502
BseLI	CCNNNNNNNGG	1 cut(s)	430
BseMI	GCAATG	1 cut(s)	118
BseMII	CTCAG	2 cut(s)	383, 689
BseNI	ACTGG	2 cut(s)	490, 573
BseRI	GAGGAG	2 cut(s)	26, 575
BseXI	GCAGC	1 cut(s)	427
BsgI	GTGCAG	1 cut(s)	426
BshFI	GGCC	1 cut(s)	347
BsiHKAI	GWGCWC	1 cut(s)	267
BslFI	GGGAC	2 cut(s)	436, 551
BslI	CCNNNNNNNGG	1 cut(s)	430
BsmFI	GGGAC	2 cut(s)	436, 551
BsnI	GGCC	1 cut(s)	347
Bsp119I	TTCGAA	1 cut(s)	650
Bsp1286I	GDGCHC	1 cut(s)	267
Bsp1407I	TGTACA	1 cut(s)	192
Bsp143I	GATC	6 cut(s)	49, 87, 220, 418, 620, 714
BspACI	CCGC	4 cut(s)	5, 45, 83, 344
BspANI	GGCC	1 cut(s)	347
BspCNI	CTCAG	2 cut(s)	382, 690
BspMI	ACCTGC	3 cut(s)	158, 465, 655
BspPI	GGATC	1 cut(s)	82
BspQI	GCTCTTC	1 cut(s)	297
BspT104I	TTCGAA	1 cut(s)	650
BsrDI	GCAATG	1 cut(s)	118
BsrGI	TGTACA	1 cut(s)	192
BsrI	ACTGG	2 cut(s)	490, 573
BssECI	CCNNGG	2 cut(s)	117, 348
BssMI	GATC	6 cut(s)	49, 87, 220, 418, 620, 714
Bst2UI	CCWGG	3 cut(s)	62, 349, 590
Bst4CI	ACNGT	1 cut(s)	542
Bst6I	CTCTTC	1 cut(s)	297
BstAUI	TGTACA	1 cut(s)	192
BstBAI	YACGTR	1 cut(s)	243
BstBI	TTCGAA	1 cut(s)	650
BstC8I	GCNNGC	4 cut(s)	109, 462, 472, 686
BstDEI	CTNAG	2 cut(s)	369, 698
BstENI	CCTNNNNNAGG	1 cut(s)	428
BstF5I	GGATG	2 cut(s)	286, 502
BstHHI	GCGC	1 cut(s)	726
BstKTI	GATC	6 cut(s)	52, 90, 223, 421, 623, 717
BstMBI	GATC	6 cut(s)	49, 87, 220, 418, 620, 714
BstMWI	GCNNNNNNNGC	3 cut(s)	113, 232, 694
BstNI	CCWGG	3 cut(s)	62, 349, 590
BstNSI	RCATGY	1 cut(s)	464
BstSCI	CCNGG	3 cut(s)	60, 347, 588
BstV1I	GCAGC	1 cut(s)	427
BstX2I	RGATCY	2 cut(s)	87, 714
BstYI	RGATCY	2 cut(s)	87, 714
BsuRI	GGCC	1 cut(s)	347
BtsCI	GGATG	2 cut(s)	286, 502
BveI	ACCTGC	3 cut(s)	158, 465, 655
Cac8I	GCNNGC	4 cut(s)	109, 462, 472, 686
CfoI	GCGC	1 cut(s)	726
Cfr13I	GGNCC	1 cut(s)	481
Csp6I	GTAC	1 cut(s)	193
CviAII	CATG	1 cut(s)	461
CviQI	GTAC	1 cut(s)	193
DdeI	CTNAG	2 cut(s)	369, 698
DpnI	GATC	6 cut(s)	51, 89, 222, 420, 622, 716
DpnII	GATC	6 cut(s)	49, 87, 220, 418, 620, 714
EaeI	YGGCCR	1 cut(s)	345
Eam1104I	CTCTTC	1 cut(s)	297
EarI	CTCTTC	1 cut(s)	297
Ecl136II	GAGCTC	1 cut(s)	265
Eco24I	GRGCYC	1 cut(s)	267
Eco47I	GGWCC	1 cut(s)	481
Eco53kI	GAGCTC	1 cut(s)	265
Eco72I	CACGTG	1 cut(s)	243
EcoICRI	GAGCTC	1 cut(s)	265
EcoNI	CCTNNNNNAGG	1 cut(s)	428
EcoRI	GAATTC	2 cut(s)	143, 652
EcoRII	CCWGG	3 cut(s)	60, 347, 588
EcoT22I	ATGCAT	1 cut(s)	462
EcoT38I	GRGCYC	1 cut(s)	267
FaeI	CATG	1 cut(s)	464
FaiI	YATR	9 cut(s)	309, 320, 447, 456, 458, 462, 467, 513, 692
FaqI	GGGAC	2 cut(s)	436, 551
FatI	CATG	1 cut(s)	460
FauNDI	CATATG	1 cut(s)	456
FbaI	TGATCA	1 cut(s)	418
Fnu4HI	GCNGC	3 cut(s)	6, 345, 441
FokI	GGATG	2 cut(s)	293, 509
FriOI	GRGCYC	1 cut(s)	267
Fsp4HI	GCNGC	3 cut(s)	6, 345, 441
FspBI	CTAG	1 cut(s)	748
GlaI	GCGC	1 cut(s)	725
GluI	GCNGC	3 cut(s)	6, 345, 441
GsuI	CTGGAG	3 cut(s)	251, 572, 590
HaeIII	GGCC	1 cut(s)	347
HhaI	GCGC	1 cut(s)	726
Hin1II	CATG	1 cut(s)	464
Hin6I	GCGC	1 cut(s)	724
HinP1I	GCGC	1 cut(s)	724
HindIII	AAGCTT	2 cut(s)	626, 686
HinfI	GANTC	3 cut(s)	200, 523, 647
HphI	GGTGA	4 cut(s)	109, 139, 409, 413
Hpy166II	GTNNAC	1 cut(s)	195
Hpy188I	TCNGA	1 cut(s)	372
Hpy188III	TCNNGA	4 cut(s)	70, 140, 268, 527
Hpy8I	GTNNAC	1 cut(s)	195
HpyAV	CCTTC	3 cut(s)	307, 434, 697
HpyCH4III	ACNGT	1 cut(s)	542
HpyCH4IV	ACGT	1 cut(s)	242
HpyCH4V	TGCA	4 cut(s)	111, 153, 443, 460
HpyF10VI	GCNNNNNNNGC	3 cut(s)	113, 232, 694
HpyF3I	CTNAG	2 cut(s)	369, 698
HpySE526I	ACGT	1 cut(s)	242
Hsp92II	CATG	1 cut(s)	464
HspAI	GCGC	1 cut(s)	724
Ksp22I	TGATCA	1 cut(s)	418
Kzo9I	GATC	6 cut(s)	49, 87, 220, 418, 620, 714
LguI	GCTCTTC	1 cut(s)	297
LmnI	GCTCC	2 cut(s)	270, 591
Lsp1109I	GCAGC	1 cut(s)	427
MaeI	CTAG	1 cut(s)	748
MaeII	ACGT	1 cut(s)	242
MalI	GATC	6 cut(s)	51, 89, 222, 420, 622, 716
MboI	GATC	6 cut(s)	49, 87, 220, 418, 620, 714
MboII	GAAGA	4 cut(s)	32, 136, 311, 314
MflI	RGATCY	2 cut(s)	87, 714
MhlI	GDGCHC	1 cut(s)	267
MluCI	AATT	5 cut(s)	143, 273, 359, 652, 658
MlyI	GAGTC	1 cut(s)	209
MmeI	TCCRAC	2 cut(s)	459, 474
Mph1103I	ATGCAT	1 cut(s)	462
MseI	TTAA	1 cut(s)	719
MslI	CAYNNNNRTG	1 cut(s)	459
MspR9I	CCNGG	3 cut(s)	62, 349, 590
MvaI	CCWGG	3 cut(s)	62, 349, 590
MwoI	GCNNNNNNNGC	3 cut(s)	113, 232, 694
NdeI	CATATG	1 cut(s)	456
NdeII	GATC	6 cut(s)	49, 87, 220, 418, 620, 714
NlaIII	CATG	1 cut(s)	464
NmeAIII	GCCGAG	1 cut(s)	142
NsiI	ATGCAT	1 cut(s)	462
NspI	RCATGY	1 cut(s)	464
NspV	TTCGAA	1 cut(s)	650
PaeI	GCATGC	1 cut(s)	464
PaqCI	CACCTGC	1 cut(s)	158
PciSI	GCTCTTC	1 cut(s)	297
PcsI	WCGNNNNNNNCGW	1 cut(s)	216
PfeI	GAWTC	2 cut(s)	523, 647
PflFI	GACNNNGTC	1 cut(s)	485
PfoI	TCCNGGA	1 cut(s)	588
PkrI	GCNGC	3 cut(s)	7, 346, 442
PleI	GAGTC	1 cut(s)	208
PmaCI	CACGTG	1 cut(s)	243
PmlI	CACGTG	1 cut(s)	243
PpsI	GAGTC	1 cut(s)	208
Ppu21I	YACGTR	1 cut(s)	243
Psp124BI	GAGCTC	1 cut(s)	267
Psp6I	CCWGG	3 cut(s)	60, 347, 588
PspCI	CACGTG	1 cut(s)	243
PspGI	CCWGG	3 cut(s)	60, 347, 588
PspPI	GGNCC	1 cut(s)	481
PsuI	RGATCY	2 cut(s)	87, 714
PsyI	GACNNNGTC	1 cut(s)	485
RsaI	GTAC	1 cut(s)	194
RsaNI	GTAC	1 cut(s)	193
RseI	CAYNNNNRTG	1 cut(s)	459
SacI	GAGCTC	1 cut(s)	267
SapI	GCTCTTC	1 cut(s)	297
SaqAI	TTAA	1 cut(s)	719
SatI	GCNGC	3 cut(s)	6, 345, 441
Sau3AI	GATC	6 cut(s)	49, 87, 220, 418, 620, 714
Sau96I	GGNCC	1 cut(s)	481
SchI	GAGTC	1 cut(s)	209
ScrFI	CCNGG	3 cut(s)	62, 349, 590
SduI	GDGCHC	1 cut(s)	267
SfuI	TTCGAA	1 cut(s)	650
SinI	GGWCC	1 cut(s)	481
SmiMI	CAYNNNNRTG	1 cut(s)	459
SphI	GCATGC	1 cut(s)	464
Sse9I	AATT	5 cut(s)	143, 273, 359, 652, 658
SsiI	CCGC	4 cut(s)	5, 45, 83, 344
SspMI	CTAG	1 cut(s)	748
SstI	GAGCTC	1 cut(s)	267
StyD4I	CCNGG	3 cut(s)	60, 347, 588
TaaI	ACNGT	1 cut(s)	542
TaiI	ACGT	1 cut(s)	245
TaqI	TCGA	4 cut(s)	228, 427, 552, 650
TasI	AATT	5 cut(s)	143, 273, 359, 652, 658
TatI	WGTACW	1 cut(s)	192
TauI	GCSGC	2 cut(s)	8, 347
TfiI	GAWTC	2 cut(s)	523, 647
Tru1I	TTAA	1 cut(s)	719
Tru9I	TTAA	1 cut(s)	719
TseI	GCWGC	1 cut(s)	440
TspDTI	ATGAA	4 cut(s)	41, 372, 420, 707
Tth111I	GACNNNGTC	1 cut(s)	485
VpaK11BI	GGWCC	1 cut(s)	481
XagI	CCTNNNNNAGG	1 cut(s)	428
XapI	RAATTY	2 cut(s)	143, 652
XceI	RCATGY	1 cut(s)	464
XspI	CTAG	1 cut(s)	748
Zsp2I	ATGCAT	1 cut(s)	462

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.