Basic Information

Type: gene

Biological Identity

Species

malus_domestica

Chromosome

Chr16

Orthogroup ID

OG0004071

Physical Location & Seq

Genomic Coordinates Reverse (-)

27646219 .. 27648554

Gene Structure 2336 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

MD16G1247400.v1.1.491

Sequence Viewer

CDS Protein Promoter (2k)

Length: 882 bp

ATGTTAAAAAAAAGGTGCTCAATGTGCAGCAATTGGAAATTGGAAAAGAGAGAAAAATGGCGGCAACCAGTGACGAAGAAATGGATTCTCTGCTTTCCACTTTGGATCAAATCTACCAGGTACAAATCTTCCTCCTCCTCCTCCTCACTGTGCCACTTTCCTAATTCCGTTTGGCGTCCTCAAAATTCTCAGGACTTCAAGACCGGCGCAGCCGAGATCGAGTCGAGCAAATCCGCGTGCAATGCCGAGGCGAAGAAGCGAGAGGCTCTCGAATTCACCTGCAACAATCTCAGACAAGAAAACGAACGATTGAGCAGATTGTACACGGAGTCGTTCAGCAGTGTTGCTGATCAGCTCGAGCGGCGTACAAGAAGCCAGAGCTTGAAGGAAGAGGTGAAGAAAATGAGGGATGAGTGGATGAGTAAAGAAGAAGAGCACAGGAAAGCTATTGAGTTGGTTAAGCAAGATTATGCTGCCAAGCTTGATGATTTGGCGGCTCAAATTAGAGGGTTTATGCTTGAGAAGGCAAAACATGAAGCAACCATTAATCACCTTCAACGGGATTTAGCAGCCCATAAGTCCCATATGCATGTTCTAGCAAGCAGGTTGGACCACTTGCAGTTGGATGTGGAATCGAAATATATTCTTGAGATTCAGGATTTGAAGGACTGCCTCGCAATTGAACAGGAGGAGAAAAATGAGTTGAATAAAAAAGTCCAAGACTTGGAAAAGGAATTGGTAGTTAGCAGATCAAAGCTAGTTGAACAGAAACAAGACTCAAACTCAACTTGGCAGGTCGAAATGCTGAAGACTAAGATTATGAAGCTGAGAAAGGAGAATGAGATCTTAAAGCGCAAGATACTTCCTTCAGACAAGGGCTAG

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0005575 GO:0005622 GO:0005623 GO:0005737 GO:0005783 GO:0005911 GO:0006810 GO:0008150 GO:0009506 GO:0009987 GO:0010496 GO:0012505 GO:0030054 GO:0043226 GO:0043227 GO:0043229 GO:0043231 GO:0044424 GO:0044444 GO:0044464 GO:0046907 GO:0051179 GO:0051234 GO:0051641 GO:0051649 GO:0055044

KEGG Pathways

Metabolic & Signaling

No pathways identified.

Pfam Domains

Protein Families

No domains found.

Protein Analysis

294

Amino Acids

34.51

Weight (kDa)

9.26

Isoelectric Point (pI)

65.67

Instability Index

Protein Domains (Pfam)

No Pfam domains detected for this protein.

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

Style Settings

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Align Labels (Cladogram)

Image

Tree File

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Publication-ready

iTOL Interactive Tree Of Life · Most popular EvolView Flexible annotations MEGA Desktop phylogenetics suite FigTree Desktop tree editor

Orthologous Genes (Group: OG0004071)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT4G26020 AT4G26020 AT4G26020
fragaria_vesca	FvH4_4g07070 FvH4_4g07070 FvH4_4g07070 FvH4_4g07070 FvH4_4g07070 FvH4_4g07070 FvH4_4g07070 FvH4_4g07070 FvH4_4g07070 FvH4_4g07070 FvH4_4g07070
malus_domestica	MD16G1247400.v1.1
prunus_persica	Prupe.1G073900_v2.0.a1 Prupe.1G073900_v2.0.a1 Prupe.1G073900_v2.0.a1 Prupe.1G073900_v2.0.a1
pyrus_communis	pycom16g20770
rosa_chinensis	RchiOBHm_Chr4g0399191
rosa_laevigata	RLG00000009291
rosa_multiflora	Rmu_sc0002582.1_g000003 Rmu_sc0024868.1_g000001
rosa_roxburghii	Rroxscaffold_5G00344150
rosa_rugosa	Rorug04G0014800 Rorug04G0014900 Rorug04G0015000
rosa_samantha	Rh4AG092900 Rh4BG090700 Rh4CG101300 Rh4DG085200
rosa_wichuraiana	Rw4G007650

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AarI	CACCTGC	1 cut(s)	287
Acc36I	ACCTGC	3 cut(s)	287, 594, 784
AccB7I	CCANNNNNTGG	1 cut(s)	724
AccBSI	CCGCTC	1 cut(s)	361
AccII	CGCG	1 cut(s)	236
AciI	CCGC	4 cut(s)	61, 234, 361, 494
AclWI	GGATC	1 cut(s)	113
AcsI	RAATTY	2 cut(s)	184, 272
AcuI	CTGAAG	2 cut(s)	827, 852
AcyI	GRCGYC	1 cut(s)	175
AfaI	GTAC	3 cut(s)	122, 323, 367
AfiI	CCNNNNNNNGG	2 cut(s)	559, 724
AgsI	TTSAA	7 cut(s)	199, 385, 557, 664, 683, 706, 764
AjnI	CCWGG	1 cut(s)	116
AluBI	AGCT	6 cut(s)	355, 381, 446, 481, 757, 826
AluI	AGCT	6 cut(s)	355, 381, 446, 481, 757, 826
Alw21I	GWGCWC	2 cut(s)	20, 438
AlwI	GGATC	1 cut(s)	113
Ama87I	CYCGRG	1 cut(s)	356
ApeKI	GCWGC	4 cut(s)	27, 209, 473, 569
ApoI	RAATTY	2 cut(s)	184, 272
AseI	ATTAAT	1 cut(s)	546
AspLEI	GCGC	2 cut(s)	209, 855
AspS9I	GGNCC	1 cut(s)	610
AsuHPI	GGTGA	3 cut(s)	268, 406, 542
AvaI	CYCGRG	1 cut(s)	356
AvaII	GGWCC	1 cut(s)	610
BbsI	GAAGAC	1 cut(s)	815
Bbv12I	GWGCWC	2 cut(s)	20, 438
BbvI	GCAGC	4 cut(s)	39, 221, 460, 581
BciT130I	CCWGG	1 cut(s)	118
BclI	TGATCA	1 cut(s)	349
BfaI	CTAG	3 cut(s)	596, 758, 880
BfuAI	ACCTGC	3 cut(s)	287, 594, 784
BglII	AGATCT	1 cut(s)	843
BisI	GCNGC	7 cut(s)	28, 62, 210, 362, 474, 495, 570
BlsI	GCNGC	7 cut(s)	29, 63, 211, 363, 475, 496, 571
Bme1390I	CCNGG	1 cut(s)	118
Bme18I	GGWCC	1 cut(s)	610
BmeT110I	CYCGRG	1 cut(s)	356
BmgT120I	GGNCC	1 cut(s)	610
BmrFI	CCNGG	1 cut(s)	118
BpiI	GAAGAC	1 cut(s)	815
BplI	GAGNNNNNCTC	2 cut(s)	252, 284
BpuEI	CTTGAG	2 cut(s)	539, 668
BsaHI	GRCGYC	1 cut(s)	175
BsaJI	CCNNGG	1 cut(s)	246
Bsc4I	CCNNNNNNNGG	2 cut(s)	559, 724
Bse118I	RCCGGY	1 cut(s)	203
Bse1I	ACTGG	1 cut(s)	68
Bse3DI	GCAATG	1 cut(s)	247
BseBI	CCWGG	1 cut(s)	118
BseDI	CCNNGG	1 cut(s)	246
BseGI	GGATG	3 cut(s)	415, 423, 631
BseLI	CCNNNNNNNGG	2 cut(s)	559, 724
BseMI	GCAATG	1 cut(s)	247
BseMII	CTCAG	3 cut(s)	203, 304, 818
BseNI	ACTGG	1 cut(s)	68
BseRI	GAGGAG	5 cut(s)	124, 127, 130, 133, 704
BseXI	GCAGC	4 cut(s)	39, 221, 460, 581
BsgI	GTGCAG	1 cut(s)	46
Bsh1236I	CGCG	1 cut(s)	236
BsiHKAI	GWGCWC	2 cut(s)	20, 438
BsiHKCI	CYCGRG	1 cut(s)	356
BsiSI	CCGG	1 cut(s)	204
BslFI	GGGAC	1 cut(s)	565
BslI	CCNNNNNNNGG	2 cut(s)	559, 724
BsmFI	GGGAC	1 cut(s)	565
BsoBI	CYCGRG	1 cut(s)	356
Bsp1286I	GDGCHC	2 cut(s)	20, 438
Bsp1407I	TGTACA	1 cut(s)	321
Bsp143I	GATC	5 cut(s)	105, 216, 349, 749, 843
BspACI	CCGC	4 cut(s)	61, 234, 361, 494
BspCNI	CTCAG	3 cut(s)	202, 303, 819
BspFNI	CGCG	1 cut(s)	236
BspMI	ACCTGC	3 cut(s)	287, 594, 784
BspPI	GGATC	1 cut(s)	113
BspQI	GCTCTTC	1 cut(s)	426
BsrBI	CCGCTC	1 cut(s)	361
BsrDI	GCAATG	1 cut(s)	247
BsrFI	RCCGGY	1 cut(s)	203
BsrGI	TGTACA	1 cut(s)	321
BsrI	ACTGG	1 cut(s)	68
BssAI	RCCGGY	1 cut(s)	203
BssECI	CCNNGG	1 cut(s)	246
BssMI	GATC	5 cut(s)	105, 216, 349, 749, 843
BssNI	GRCGYC	1 cut(s)	175
Bst2UI	CCWGG	1 cut(s)	118
Bst4CI	ACNGT	1 cut(s)	150
Bst6I	CTCTTC	2 cut(s)	384, 426
BstACI	GRCGYC	1 cut(s)	175
BstAUI	TGTACA	1 cut(s)	321
BstC8I	GCNNGC	2 cut(s)	238, 601
BstDEI	CTNAG	4 cut(s)	189, 290, 813, 827
BstF5I	GGATG	3 cut(s)	415, 423, 631
BstFNI	CGCG	1 cut(s)	236
BstHHI	GCGC	2 cut(s)	209, 855
BstKTI	GATC	5 cut(s)	108, 219, 352, 752, 846
BstMBI	GATC	5 cut(s)	105, 216, 349, 749, 843
BstMWI	GCNNNNNNNGC	3 cut(s)	24, 242, 361
BstNI	CCWGG	1 cut(s)	118
BstNSI	RCATGY	1 cut(s)	593
BstSCI	CCNGG	1 cut(s)	116
BstUI	CGCG	1 cut(s)	236
BstV1I	GCAGC	4 cut(s)	39, 221, 460, 581
BstV2I	GAAGAC	1 cut(s)	815
BstX2I	RGATCY	1 cut(s)	843
BstYI	RGATCY	1 cut(s)	843
BtsCI	GGATG	3 cut(s)	415, 423, 631
BtsI	GCAGTG	1 cut(s)	346
BtsIMutI	CAGTG	3 cut(s)	75, 146, 346
BveI	ACCTGC	3 cut(s)	287, 594, 784
Cac8I	GCNNGC	2 cut(s)	238, 601
CfoI	GCGC	2 cut(s)	209, 855
Cfr10I	RCCGGY	1 cut(s)	203
Cfr13I	GGNCC	1 cut(s)	610
CseI	GACGC	1 cut(s)	164
CsiI	ACCWGGT	1 cut(s)	116
Csp6I	GTAC	3 cut(s)	121, 322, 366
CviAII	CATG	2 cut(s)	533, 590
CviQI	GTAC	3 cut(s)	121, 322, 366
DdeI	CTNAG	4 cut(s)	189, 290, 813, 827
DpnI	GATC	5 cut(s)	107, 218, 351, 751, 845
DpnII	GATC	5 cut(s)	105, 216, 349, 749, 843
Eam1104I	CTCTTC	2 cut(s)	384, 426
EarI	CTCTTC	2 cut(s)	384, 426
Eco47I	GGWCC	1 cut(s)	610
Eco57I	CTGAAG	2 cut(s)	827, 852
Eco88I	CYCGRG	1 cut(s)	356
EcoRI	GAATTC	1 cut(s)	272
EcoRII	CCWGG	1 cut(s)	116
EcoT22I	ATGCAT	1 cut(s)	591
FaeI	CATG	2 cut(s)	536, 593
FaiI	YATR	9 cut(s)	471, 515, 534, 576, 585, 587, 591, 642, 821
FaqI	GGGAC	1 cut(s)	565
FatI	CATG	2 cut(s)	532, 589
FauNDI	CATATG	1 cut(s)	585
FbaI	TGATCA	1 cut(s)	349
Fnu4HI	GCNGC	7 cut(s)	28, 62, 210, 362, 474, 495, 570
FokI	GGATG	3 cut(s)	422, 430, 638
Fsp4HI	GCNGC	7 cut(s)	28, 62, 210, 362, 474, 495, 570
FspBI	CTAG	3 cut(s)	596, 758, 880
GlaI	GCGC	2 cut(s)	208, 854
GluI	GCNGC	7 cut(s)	28, 62, 210, 362, 474, 495, 570
HapII	CCGG	1 cut(s)	204
HgaI	GACGC	1 cut(s)	164
HhaI	GCGC	2 cut(s)	209, 855
Hin1I	GRCGYC	1 cut(s)	175
Hin1II	CATG	2 cut(s)	536, 593
Hin6I	GCGC	2 cut(s)	207, 853
HinP1I	GCGC	2 cut(s)	207, 853
HindIII	AAGCTT	1 cut(s)	479
HinfI	GANTC	6 cut(s)	85, 221, 329, 632, 652, 776
HpaII	CCGG	1 cut(s)	204
HphI	GGTGA	3 cut(s)	268, 406, 542
Hpy166II	GTNNAC	1 cut(s)	324
Hpy188I	TCNGA	2 cut(s)	293, 871
Hpy188III	TCNNGA	5 cut(s)	191, 199, 269, 647, 656
Hpy8I	GTNNAC	1 cut(s)	324
HpyAV	CCTTC	5 cut(s)	379, 517, 563, 658, 876
HpyCH4III	ACNGT	1 cut(s)	150
HpyCH4V	TGCA	5 cut(s)	27, 240, 282, 589, 619
HpyF10VI	GCNNNNNNNGC	3 cut(s)	24, 242, 361
HpyF3I	CTNAG	4 cut(s)	189, 290, 813, 827
Hsp92I	GRCGYC	1 cut(s)	175
Hsp92II	CATG	2 cut(s)	536, 593
HspAI	GCGC	2 cut(s)	207, 853
Ksp22I	TGATCA	1 cut(s)	349
Kzo9I	GATC	5 cut(s)	105, 216, 349, 749, 843
LguI	GCTCTTC	1 cut(s)	426
Lsp1109I	GCAGC	4 cut(s)	39, 221, 460, 581
MabI	ACCWGGT	1 cut(s)	116
MaeI	CTAG	3 cut(s)	596, 758, 880
MaeIII	GTNAC	1 cut(s)	70
MalI	GATC	5 cut(s)	107, 218, 351, 751, 845
MbiI	CCGCTC	1 cut(s)	361
MboI	GATC	5 cut(s)	105, 216, 349, 749, 843
MboII	GAAGA	8 cut(s)	88, 120, 265, 401, 409, 440, 443, 820
MfeI	CAATTG	2 cut(s)	31, 678
MflI	RGATCY	1 cut(s)	843
MhlI	GDGCHC	2 cut(s)	20, 438
MluCI	AATT	8 cut(s)	31, 38, 163, 184, 272, 501, 678, 734
MlyI	GAGTC	3 cut(s)	230, 338, 770
MmeI	TCCRAC	2 cut(s)	588, 603
Mph1103I	ATGCAT	1 cut(s)	591
MseI	TTAA	4 cut(s)	5, 459, 546, 848
MslI	CAYNNNNRTG	1 cut(s)	588
MspI	CCGG	1 cut(s)	204
MspR9I	CCNGG	1 cut(s)	118
MunI	CAATTG	2 cut(s)	31, 678
MvaI	CCWGG	1 cut(s)	118
MvnI	CGCG	1 cut(s)	236
MwoI	GCNNNNNNNGC	3 cut(s)	24, 242, 361
NdeI	CATATG	1 cut(s)	585
NdeII	GATC	5 cut(s)	105, 216, 349, 749, 843
NlaIII	CATG	2 cut(s)	536, 593
NmeAIII	GCCGAG	2 cut(s)	238, 271
NmuCI	GTSAC	1 cut(s)	70
NsiI	ATGCAT	1 cut(s)	591
NspI	RCATGY	1 cut(s)	593
PaeR7I	CTCGAG	1 cut(s)	356
PaqCI	CACCTGC	1 cut(s)	287
PciSI	GCTCTTC	1 cut(s)	426
PfeI	GAWTC	3 cut(s)	85, 632, 652
PflMI	CCANNNNNTGG	1 cut(s)	724
PkrI	GCNGC	7 cut(s)	29, 63, 211, 363, 475, 496, 571
PleI	GAGTC	3 cut(s)	229, 337, 770
PpsI	GAGTC	3 cut(s)	229, 337, 770
PshBI	ATTAAT	1 cut(s)	546
Psp6I	CCWGG	1 cut(s)	116
PspGI	CCWGG	1 cut(s)	116
PspPI	GGNCC	1 cut(s)	610
PspXI	VCTCGAGB	1 cut(s)	356
PsuI	RGATCY	1 cut(s)	843
RsaI	GTAC	3 cut(s)	122, 323, 367
RsaNI	GTAC	3 cut(s)	121, 322, 366
RseI	CAYNNNNRTG	1 cut(s)	588
SapI	GCTCTTC	1 cut(s)	426
SaqAI	TTAA	4 cut(s)	5, 459, 546, 848
SatI	GCNGC	7 cut(s)	28, 62, 210, 362, 474, 495, 570
Sau3AI	GATC	5 cut(s)	105, 216, 349, 749, 843
Sau96I	GGNCC	1 cut(s)	610
SchI	GAGTC	3 cut(s)	230, 338, 770
ScrFI	CCNGG	1 cut(s)	118
SduI	GDGCHC	2 cut(s)	20, 438
SexAI	ACCWGGT	1 cut(s)	116
Sfr274I	CTCGAG	1 cut(s)	356
SinI	GGWCC	1 cut(s)	610
SlaI	CTCGAG	1 cut(s)	356
SmiMI	CAYNNNNRTG	1 cut(s)	588
SmlI	CTYRAG	3 cut(s)	356, 518, 647
SmoI	CTYRAG	3 cut(s)	356, 518, 647
Sse9I	AATT	8 cut(s)	31, 38, 163, 184, 272, 501, 678, 734
SsiI	CCGC	4 cut(s)	61, 234, 361, 494
SspMI	CTAG	3 cut(s)	596, 758, 880
StyD4I	CCNGG	1 cut(s)	116
TaaI	ACNGT	1 cut(s)	150
TaqI	TCGA	6 cut(s)	219, 224, 270, 357, 635, 798
TasI	AATT	8 cut(s)	31, 38, 163, 184, 272, 501, 678, 734
TatI	WGTACW	1 cut(s)	321
TauI	GCSGC	3 cut(s)	64, 364, 497
TfiI	GAWTC	3 cut(s)	85, 632, 652
Tru1I	TTAA	4 cut(s)	5, 459, 546, 848
Tru9I	TTAA	4 cut(s)	5, 459, 546, 848
TscAI	CASTG	3 cut(s)	75, 153, 346
TseFI	GTSAC	1 cut(s)	70
TseI	GCWGC	4 cut(s)	27, 209, 473, 569
Tsp45I	GTSAC	1 cut(s)	70
TspDTI	ATGAA	2 cut(s)	549, 836
TspGWI	ACGGA	2 cut(s)	157, 341
TspRI	CASTG	3 cut(s)	75, 153, 346
Van91I	CCANNNNNTGG	1 cut(s)	724
VpaK11BI	GGWCC	1 cut(s)	610
VspI	ATTAAT	1 cut(s)	546
XapI	RAATTY	2 cut(s)	184, 272
XceI	RCATGY	1 cut(s)	593
XhoI	CTCGAG	1 cut(s)	356
XspI	CTAG	3 cut(s)	596, 758, 880
Zsp2I	ATGCAT	1 cut(s)	591

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.