Basic Information

Type: gene

Biological Identity

Species

rosa_samantha

Chromosome

Chr4B

Orthogroup ID

OG0004071

Physical Location & Seq

Genomic Coordinates Reverse (-)

15536346 .. 15537888

Gene Structure 1543 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

Rh4BG090700.1

Sequence Viewer

CDS Protein Promoter (2k)

Length: 684 bp

ATGGCGGCAACGACCGACGAAGAAATGGACTCTCTCCTCTCCACTGTCGATCAAATCTACCAGGATTTCAAGGACGGCGTAGCGGAAATCCAATCGGTGAAATCCACCTGCAATGCCGAGGCGAAGAAGCGAGAAGCTCTTGAATTCACCTGCAACAATCTCAAACAAGAGAATGAGCGATTGACGAGAATGTACACCGAGTCTCTGAACGACCTTGCTGATCAGCTCGAACGGCGTAGCACATGCCAGGGCTTGAAGGAAGAGCTCAACAGACCAAGGTTGATGATTTGGAGGCTCAAATTAGATGAGAAAGGGTTTCTTGTGGAGAAGGCGAAAAATGAAGCAACCATTGATCACCTTCGACAGGATTTAGCTGCACATAAGTCCCATATGCATGTTATGCAAAGCAGATTGGACCAAGTCCAATTGGATGTGGAAACAAAATATGTTTTTGACATTCAGGATTTGAAGGACTGTATCGCAATCGAACAGGAGGAGAAAAATGAGTTGAATAGAAAACTCCAGGATTTAGAAAAAGAAATGCTGGTTAGCAGATCAAAGCTTGTGCAGCAGCAACGAGATTCGAATTCAAATTGGCAGGTTGAAACACTTAAGACCAACCTTATGAAGCTGAGGAAGGAGAATGAGATCTTAAAGCGCAAACTACATGCAGATGAGGGCTAG

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0005575 GO:0005622 GO:0005623 GO:0005737 GO:0005783 GO:0005911 GO:0006810 GO:0008150 GO:0009506 GO:0009987 GO:0010496 GO:0012505 GO:0030054 GO:0043226 GO:0043227 GO:0043229 GO:0043231 GO:0044424 GO:0044444 GO:0044464 GO:0046907 GO:0051179 GO:0051234 GO:0051641 GO:0051649 GO:0055044

KEGG Pathways

Metabolic & Signaling

No pathways identified.

Pfam Domains

Protein Families

No domains found.

Protein Analysis

227

Amino Acids

26.65

Weight (kDa)

5.44

Isoelectric Point (pI)

45.63

Instability Index

Protein Domains (Pfam)

No Pfam domains detected for this protein.

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

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Align Labels (Cladogram)

Image

Tree File

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Publication-ready

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Orthologous Genes (Group: OG0004071)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT4G26020 AT4G26020 AT4G26020
fragaria_vesca	FvH4_4g07070 FvH4_4g07070 FvH4_4g07070 FvH4_4g07070 FvH4_4g07070 FvH4_4g07070 FvH4_4g07070 FvH4_4g07070 FvH4_4g07070 FvH4_4g07070 FvH4_4g07070
malus_domestica	MD16G1247400.v1.1
prunus_persica	Prupe.1G073900_v2.0.a1 Prupe.1G073900_v2.0.a1 Prupe.1G073900_v2.0.a1 Prupe.1G073900_v2.0.a1
pyrus_communis	pycom16g20770
rosa_chinensis	RchiOBHm_Chr4g0399191
rosa_laevigata	RLG00000009291
rosa_multiflora	Rmu_sc0002582.1_g000003 Rmu_sc0024868.1_g000001
rosa_roxburghii	Rroxscaffold_5G00344150
rosa_rugosa	Rorug04G0014800 Rorug04G0014900 Rorug04G0015000
rosa_samantha	Rh4AG092900 Rh4BG090700 Rh4CG101300 Rh4DG085200
rosa_wichuraiana	Rw4G007650

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AarI	CACCTGC	2 cut(s)	116, 158
Acc36I	ACCTGC	3 cut(s)	116, 158, 589
AciI	CCGC	2 cut(s)	5, 83
AcsI	RAATTY	2 cut(s)	143, 586
AfaI	GTAC	1 cut(s)	194
AfiI	CCNNNNNNNGG	1 cut(s)	364
AflII	CTTAAG	1 cut(s)	611
AgsI	TTSAA	7 cut(s)	70, 143, 256, 469, 511, 591, 605
AjnI	CCWGG	3 cut(s)	60, 246, 522
AluBI	AGCT	6 cut(s)	137, 226, 265, 374, 562, 631
AluI	AGCT	6 cut(s)	137, 226, 265, 374, 562, 631
Alw21I	GWGCWC	1 cut(s)	267
Alw26I	GTCTC	1 cut(s)	207
ApeKI	GCWGC	3 cut(s)	374, 568, 571
ApoI	RAATTY	2 cut(s)	143, 586
AspLEI	GCGC	1 cut(s)	660
AspS9I	GGNCC	1 cut(s)	415
AsuHPI	GGTGA	3 cut(s)	109, 139, 347
AsuII	TTCGAA	1 cut(s)	584
AvaII	GGWCC	1 cut(s)	415
BanII	GRGCYC	1 cut(s)	267
Bbv12I	GWGCWC	1 cut(s)	267
BbvCI	CCTCAGC	1 cut(s)	632
BbvI	GCAGC	3 cut(s)	361, 580, 583
BceAI	ACGGC	2 cut(s)	91, 248
BciT130I	CCWGG	3 cut(s)	62, 248, 524
BclI	TGATCA	2 cut(s)	220, 352
BcoDI	GTCTC	1 cut(s)	207
BfaI	CTAG	1 cut(s)	682
BfrI	CTTAAG	1 cut(s)	611
BfuAI	ACCTGC	3 cut(s)	116, 158, 589
BglII	AGATCT	1 cut(s)	648
BisI	GCNGC	4 cut(s)	6, 375, 569, 572
BlsI	GCNGC	4 cut(s)	7, 376, 570, 573
Bme1390I	CCNGG	3 cut(s)	62, 248, 524
Bme18I	GGWCC	1 cut(s)	415
BmgT120I	GGNCC	1 cut(s)	415
BmrFI	CCNGG	3 cut(s)	62, 248, 524
BpmI	CTGGAG	1 cut(s)	506
Bpu10I	CCTNAGC	1 cut(s)	632
Bpu14I	TTCGAA	1 cut(s)	584
BsaJI	CCNNGG	3 cut(s)	117, 247, 275
Bsc4I	CCNNNNNNNGG	1 cut(s)	364
Bse3DI	GCAATG	1 cut(s)	118
BseBI	CCWGG	3 cut(s)	62, 248, 524
BseDI	CCNNGG	3 cut(s)	117, 247, 275
BseGI	GGATG	1 cut(s)	436
BseLI	CCNNNNNNNGG	1 cut(s)	364
BseMI	GCAATG	1 cut(s)	118
BseMII	CTCAG	1 cut(s)	623
BseRI	GAGGAG	2 cut(s)	26, 509
BseXI	GCAGC	3 cut(s)	361, 580, 583
BsgI	GTGCAG	2 cut(s)	360, 587
Bsh1285I	CGRYCG	1 cut(s)	15
BsiEI	CGRYCG	1 cut(s)	15
BsiHKAI	GWGCWC	1 cut(s)	267
BslFI	GGGAC	1 cut(s)	370
BslI	CCNNNNNNNGG	1 cut(s)	364
BsmAI	GTCTC	1 cut(s)	207
BsmFI	GGGAC	1 cut(s)	370
Bsp119I	TTCGAA	1 cut(s)	584
Bsp1286I	GDGCHC	1 cut(s)	267
Bsp1407I	TGTACA	1 cut(s)	192
Bsp143I	GATC	5 cut(s)	49, 220, 352, 554, 648
BspACI	CCGC	2 cut(s)	5, 83
BspCNI	CTCAG	1 cut(s)	624
BspMI	ACCTGC	3 cut(s)	116, 158, 589
BspQI	GCTCTTC	1 cut(s)	255
BspT104I	TTCGAA	1 cut(s)	584
BspTI	CTTAAG	1 cut(s)	611
BsrDI	GCAATG	1 cut(s)	118
BsrGI	TGTACA	1 cut(s)	192
BssECI	CCNNGG	3 cut(s)	117, 247, 275
BssMI	GATC	5 cut(s)	49, 220, 352, 554, 648
BssT1I	CCWWGG	1 cut(s)	275
Bst2UI	CCWGG	3 cut(s)	62, 248, 524
Bst4CI	ACNGT	2 cut(s)	46, 476
Bst6I	CTCTTC	1 cut(s)	255
BstAFI	CTTAAG	1 cut(s)	611
BstAPI	GCANNNNNTGC	1 cut(s)	400
BstAUI	TGTACA	1 cut(s)	192
BstBI	TTCGAA	1 cut(s)	584
BstDEI	CTNAG	1 cut(s)	632
BstENI	CCTNNNNNAGG	1 cut(s)	362
BstF5I	GGATG	1 cut(s)	436
BstHHI	GCGC	1 cut(s)	660
BstKTI	GATC	5 cut(s)	52, 223, 355, 557, 651
BstMAI	GTCTC	1 cut(s)	207
BstMBI	GATC	5 cut(s)	49, 220, 352, 554, 648
BstMCI	CGRYCG	1 cut(s)	15
BstMWI	GCNNNNNNNGC	3 cut(s)	232, 400, 568
BstNI	CCWGG	3 cut(s)	62, 248, 524
BstNSI	RCATGY	3 cut(s)	246, 398, 671
BstSCI	CCNGG	3 cut(s)	60, 246, 522
BstV1I	GCAGC	3 cut(s)	361, 580, 583
BstX2I	RGATCY	1 cut(s)	648
BstYI	RGATCY	1 cut(s)	648
BtsCI	GGATG	1 cut(s)	436
BtsIMutI	CAGTG	1 cut(s)	42
BveI	ACCTGC	3 cut(s)	116, 158, 589
CfoI	GCGC	1 cut(s)	660
Cfr13I	GGNCC	1 cut(s)	415
Csp6I	GTAC	1 cut(s)	193
CviAII	CATG	3 cut(s)	243, 395, 668
CviJI	RGCY	9 cut(s)	137, 226, 252, 265, 295, 374, 562, 631, 681
CviKI_1	RGCY	9 cut(s)	137, 226, 252, 265, 295, 374, 562, 631, 681
CviQI	GTAC	1 cut(s)	193
DdeI	CTNAG	1 cut(s)	632
DpnI	GATC	5 cut(s)	51, 222, 354, 556, 650
DpnII	GATC	5 cut(s)	49, 220, 352, 554, 648
Eam1104I	CTCTTC	1 cut(s)	255
EarI	CTCTTC	1 cut(s)	255
Ecl136II	GAGCTC	1 cut(s)	265
Eco130I	CCWWGG	1 cut(s)	275
Eco24I	GRGCYC	1 cut(s)	267
Eco47I	GGWCC	1 cut(s)	415
Eco53kI	GAGCTC	1 cut(s)	265
EcoICRI	GAGCTC	1 cut(s)	265
EcoNI	CCTNNNNNAGG	1 cut(s)	362
EcoRI	GAATTC	2 cut(s)	143, 586
EcoRII	CCWGG	3 cut(s)	60, 246, 522
EcoT14I	CCWWGG	1 cut(s)	275
EcoT22I	ATGCAT	1 cut(s)	396
EcoT38I	GRGCYC	1 cut(s)	267
ErhI	CCWWGG	1 cut(s)	275
FaeI	CATG	3 cut(s)	246, 398, 671
FaiI	YATR	9 cut(s)	244, 381, 390, 392, 396, 401, 447, 626, 669
FalI	AAGNNNNNCTT	2 cut(s)	303, 335
FaqI	GGGAC	1 cut(s)	370
FatI	CATG	3 cut(s)	242, 394, 667
FauNDI	CATATG	1 cut(s)	390
FbaI	TGATCA	2 cut(s)	220, 352
Fnu4HI	GCNGC	4 cut(s)	6, 375, 569, 572
FokI	GGATG	1 cut(s)	443
FriOI	GRGCYC	1 cut(s)	267
Fsp4HI	GCNGC	4 cut(s)	6, 375, 569, 572
FspBI	CTAG	1 cut(s)	682
GlaI	GCGC	1 cut(s)	659
GluI	GCNGC	4 cut(s)	6, 375, 569, 572
GsuI	CTGGAG	1 cut(s)	506
HhaI	GCGC	1 cut(s)	660
Hin1II	CATG	3 cut(s)	246, 398, 671
Hin6I	GCGC	1 cut(s)	658
HinP1I	GCGC	1 cut(s)	658
HindIII	AAGCTT	1 cut(s)	560
HinfI	GANTC	3 cut(s)	29, 200, 581
HphI	GGTGA	3 cut(s)	109, 139, 347
Hpy166II	GTNNAC	1 cut(s)	195
Hpy188I	TCNGA	1 cut(s)	207
Hpy188III	TCNNGA	2 cut(s)	140, 461
Hpy8I	GTNNAC	1 cut(s)	195
Hpy99I	CGWCG	1 cut(s)	20
HpyAV	CCTTC	5 cut(s)	250, 322, 368, 463, 631
HpyCH4III	ACNGT	2 cut(s)	46, 476
HpyCH4V	TGCA	7 cut(s)	111, 153, 377, 394, 403, 568, 671
HpyF10VI	GCNNNNNNNGC	3 cut(s)	232, 400, 568
HpyF3I	CTNAG	1 cut(s)	632
Hsp92II	CATG	3 cut(s)	246, 398, 671
HspAI	GCGC	1 cut(s)	658
Ksp22I	TGATCA	2 cut(s)	220, 352
Kzo9I	GATC	5 cut(s)	49, 220, 352, 554, 648
LguI	GCTCTTC	1 cut(s)	255
Lsp1109I	GCAGC	3 cut(s)	361, 580, 583
MaeI	CTAG	1 cut(s)	682
MalI	GATC	5 cut(s)	51, 222, 354, 556, 650
MboI	GATC	5 cut(s)	49, 220, 352, 554, 648
MboII	GAAGA	3 cut(s)	32, 136, 272
MfeI	CAATTG	1 cut(s)	425
MflI	RGATCY	1 cut(s)	648
MhlI	GDGCHC	1 cut(s)	267
MluCI	AATT	5 cut(s)	143, 299, 425, 586, 592
MlyI	GAGTC	2 cut(s)	23, 209
MnlI	CCTC	6 cut(s)	47, 112, 285, 487, 627, 670
Mph1103I	ATGCAT	1 cut(s)	396
MseI	TTAA	2 cut(s)	612, 653
MslI	CAYNNNNRTG	2 cut(s)	393, 672
MspCI	CTTAAG	1 cut(s)	611
MspR9I	CCNGG	3 cut(s)	62, 248, 524
MunI	CAATTG	1 cut(s)	425
MvaI	CCWGG	3 cut(s)	62, 248, 524
MwoI	GCNNNNNNNGC	3 cut(s)	232, 400, 568
NdeI	CATATG	1 cut(s)	390
NdeII	GATC	5 cut(s)	49, 220, 352, 554, 648
NlaIII	CATG	3 cut(s)	246, 398, 671
NmeAIII	GCCGAG	1 cut(s)	142
NsiI	ATGCAT	1 cut(s)	396
NspI	RCATGY	3 cut(s)	246, 398, 671
NspV	TTCGAA	1 cut(s)	584
PaqCI	CACCTGC	2 cut(s)	116, 158
PciSI	GCTCTTC	1 cut(s)	255
PfeI	GAWTC	1 cut(s)	581
PflFI	GACNNNGTC	1 cut(s)	419
PfoI	TCCNGGA	1 cut(s)	522
PkrI	GCNGC	4 cut(s)	7, 376, 570, 573
PleI	GAGTC	2 cut(s)	23, 208
PpsI	GAGTC	2 cut(s)	23, 208
Psp124BI	GAGCTC	1 cut(s)	267
Psp6I	CCWGG	3 cut(s)	60, 246, 522
PspGI	CCWGG	3 cut(s)	60, 246, 522
PspPI	GGNCC	1 cut(s)	415
PsuI	RGATCY	1 cut(s)	648
PsyI	GACNNNGTC	1 cut(s)	419
RsaI	GTAC	1 cut(s)	194
RsaNI	GTAC	1 cut(s)	193
RseI	CAYNNNNRTG	2 cut(s)	393, 672
SacI	GAGCTC	1 cut(s)	267
SapI	GCTCTTC	1 cut(s)	255
SaqAI	TTAA	2 cut(s)	612, 653
SatI	GCNGC	4 cut(s)	6, 375, 569, 572
Sau3AI	GATC	5 cut(s)	49, 220, 352, 554, 648
Sau96I	GGNCC	1 cut(s)	415
SchI	GAGTC	2 cut(s)	23, 209
ScrFI	CCNGG	3 cut(s)	62, 248, 524
SduI	GDGCHC	1 cut(s)	267
SfuI	TTCGAA	1 cut(s)	584
SinI	GGWCC	1 cut(s)	415
SmiMI	CAYNNNNRTG	2 cut(s)	393, 672
SmlI	CTYRAG	1 cut(s)	611
SmoI	CTYRAG	1 cut(s)	611
Sse9I	AATT	5 cut(s)	143, 299, 425, 586, 592
SsiI	CCGC	2 cut(s)	5, 83
SspMI	CTAG	1 cut(s)	682
SstI	GAGCTC	1 cut(s)	267
StyD4I	CCNGG	3 cut(s)	60, 246, 522
StyI	CCWWGG	1 cut(s)	275
TaaI	ACNGT	2 cut(s)	46, 476
TaqI	TCGA	5 cut(s)	48, 228, 361, 486, 584
TaqII	GACCGA	1 cut(s)	29
TasI	AATT	5 cut(s)	143, 299, 425, 586, 592
TatI	WGTACW	1 cut(s)	192
TauI	GCSGC	1 cut(s)	8
TfiI	GAWTC	1 cut(s)	581
Tru1I	TTAA	2 cut(s)	612, 653
Tru9I	TTAA	2 cut(s)	612, 653
TscAI	CASTG	1 cut(s)	49
TseI	GCWGC	3 cut(s)	374, 568, 571
TspDTI	ATGAA	2 cut(s)	354, 641
TspRI	CASTG	1 cut(s)	49
Tth111I	GACNNNGTC	1 cut(s)	419
Vha464I	CTTAAG	1 cut(s)	611
VpaK11BI	GGWCC	1 cut(s)	415
XagI	CCTNNNNNAGG	1 cut(s)	362
XapI	RAATTY	2 cut(s)	143, 586
XceI	RCATGY	3 cut(s)	246, 398, 671
XspI	CTAG	1 cut(s)	682
Zsp2I	ATGCAT	1 cut(s)	396

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.