Basic Information

Type: gene

Biological Identity

Species

prunus_persica

Chromosome

Pp01

Orthogroup ID

OG0004071

Physical Location & Seq

Genomic Coordinates Reverse (-)

5294105 .. 5296206

Gene Structure 2102 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

Prupe.1G073900.1

Sequence Viewer

CDS Protein Promoter (2k)

Length: 762 bp

ATGGCGGCAACCAGTGACAAAGAAATGGATTCTCTGCTTTCCACTTTCGATCAAATCTACCAGAATTCTCAGGATTTCAAGAGCGGCGTGGCAGAGATCCAGTTGGCGAATTCCACGTGTAATGCCGAGGCCAAGAAGCGAGAAGCTCTGGAATTCACCTGCAACAATCTTAAGCAAGAAAATGAGCGATTGACCAGATTGTACACCGAGTGTTTGAACAATGTTGCCGATCAGCTAGAACGCCGTAGCTCAAGCCAGGGCTTGAAAGAAGAGGTGAAGAGGATGAGGGAGGAGTGCCTCAGTAAAGAAGAAGAGCGTAGGAAGGCCATGGAATTGGCTAAGCAAGACTGTGCTGCCAAGGTTGATGACTTGGAGGCTCAAATTAGAGGGTTTATGCTTGAGAAGGCGACAAATGAAGCAACCATTGATCACCTTCAACGGGATTTAGCAGCTCATAAATCCCATCTGCATGTTCTAGCAAGCAGGTTGGATCATGTGCAGTTAGATGTGGAATCAAAATATATTCTGGAGATTCAGGATTTAAAGGACTGTCTTGCAATTGAACAGGAGGAGAAAAATGAGTCGAGTAAAAAACTCCAGGACTTACAGAAGGAATTGCTGGTTAGCAGATCAAAGCTCGTTGAGCAGCAACGAGATTCGAATTCGATTTGGCAGGTTGAAACACTTAAGACCAAGATTATGAAGCTGAGGAAGGAGAATGAGATCTTAAAGCGCAAGTTTCCTCATTCAGATGAGGGCTAG

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0005575 GO:0005622 GO:0005623 GO:0005737 GO:0005783 GO:0005911 GO:0006810 GO:0008150 GO:0009506 GO:0009987 GO:0010496 GO:0012505 GO:0030054 GO:0043226 GO:0043227 GO:0043229 GO:0043231 GO:0044424 GO:0044444 GO:0044464 GO:0046907 GO:0051179 GO:0051234 GO:0051641 GO:0051649 GO:0055044

KEGG Pathways

Metabolic & Signaling

No pathways identified.

Pfam Domains

Protein Families

No domains found.

Protein Analysis

254

Amino Acids

29.31

Weight (kDa)

5.58

Isoelectric Point (pI)

57.39

Instability Index

Protein Domains (Pfam)

No Pfam domains detected for this protein.

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

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Align Labels (Cladogram)

Image

Tree File

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Publication-ready

iTOL Interactive Tree Of Life · Most popular EvolView Flexible annotations MEGA Desktop phylogenetics suite FigTree Desktop tree editor

Orthologous Genes (Group: OG0004071)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT4G26020 AT4G26020 AT4G26020
fragaria_vesca	FvH4_4g07070 FvH4_4g07070 FvH4_4g07070 FvH4_4g07070 FvH4_4g07070 FvH4_4g07070 FvH4_4g07070 FvH4_4g07070 FvH4_4g07070 FvH4_4g07070 FvH4_4g07070
malus_domestica	MD16G1247400.v1.1
prunus_persica	Prupe.1G073900_v2.0.a1 Prupe.1G073900_v2.0.a1 Prupe.1G073900_v2.0.a1 Prupe.1G073900_v2.0.a1
pyrus_communis	pycom16g20770
rosa_chinensis	RchiOBHm_Chr4g0399191
rosa_laevigata	RLG00000009291
rosa_multiflora	Rmu_sc0002582.1_g000003 Rmu_sc0024868.1_g000001
rosa_roxburghii	Rroxscaffold_5G00344150
rosa_rugosa	Rorug04G0014800 Rorug04G0014900 Rorug04G0015000
rosa_samantha	Rh4AG092900 Rh4BG090700 Rh4CG101300 Rh4DG085200
rosa_wichuraiana	Rw4G007650

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AarI	CACCTGC	1 cut(s)	167
Acc36I	ACCTGC	3 cut(s)	167, 474, 664
AccBSI	CCGCTC	1 cut(s)	84
AciI	CCGC	2 cut(s)	5, 84
AclWI	GGATC	2 cut(s)	91, 498
AcsI	RAATTY	4 cut(s)	64, 109, 152, 661
AcvI	CACGTG	1 cut(s)	117
AdeI	CACNNNGTG	1 cut(s)	210
AfaI	GTAC	1 cut(s)	203
AfiI	CCNNNNNNNGG	1 cut(s)	439
AflII	CTTAAG	2 cut(s)	170, 686
AflIII	ACRYGT	1 cut(s)	116
AgsI	TTSAA	6 cut(s)	79, 217, 265, 437, 563, 680
AjnI	CCWGG	2 cut(s)	255, 597
AluBI	AGCT	6 cut(s)	146, 235, 249, 452, 637, 706
AluI	AGCT	6 cut(s)	146, 235, 249, 452, 637, 706
AlwI	GGATC	2 cut(s)	91, 498
AoxI	GGCC	2 cut(s)	129, 324
ApeKI	GCWGC	3 cut(s)	353, 449, 646
ApoI	RAATTY	4 cut(s)	64, 109, 152, 661
AspLEI	GCGC	1 cut(s)	735
AsuHPI	GGTGA	3 cut(s)	148, 286, 422
AsuII	TTCGAA	1 cut(s)	659
BbrPI	CACGTG	1 cut(s)	117
BbvCI	CCTCAGC	1 cut(s)	707
BbvI	GCAGC	3 cut(s)	340, 461, 658
BccI	CCATC	1 cut(s)	471
BceAI	ACGGC	1 cut(s)	228
BciT130I	CCWGG	2 cut(s)	257, 599
BclI	TGATCA	1 cut(s)	427
BfaI	CTAG	3 cut(s)	236, 476, 760
BfrI	CTTAAG	2 cut(s)	170, 686
BfuAI	ACCTGC	3 cut(s)	167, 474, 664
BglII	AGATCT	1 cut(s)	723
BisI	GCNGC	5 cut(s)	6, 85, 354, 450, 647
BlpI	GCTNAGC	1 cut(s)	339
BlsI	GCNGC	5 cut(s)	7, 86, 355, 451, 648
Bme1390I	CCNGG	2 cut(s)	257, 599
BmrFI	CCNGG	2 cut(s)	257, 599
BpmI	CTGGAG	2 cut(s)	548, 581
Bpu10I	CCTNAGC	1 cut(s)	707
Bpu1102I	GCTNAGC	1 cut(s)	339
Bpu14I	TTCGAA	1 cut(s)	659
BpuEI	CTTGAG	2 cut(s)	235, 419
BsaAI	YACGTR	1 cut(s)	117
BsaJI	CCNNGG	4 cut(s)	126, 256, 327, 357
Bsc4I	CCNNNNNNNGG	1 cut(s)	439
Bse1I	ACTGG	2 cut(s)	12, 100
BseBI	CCWGG	2 cut(s)	257, 599
BseDI	CCNNGG	4 cut(s)	126, 256, 327, 357
BseGI	GGATG	1 cut(s)	288
BseLI	CCNNNNNNNGG	1 cut(s)	439
BseMII	CTCAG	3 cut(s)	83, 313, 698
BseNI	ACTGG	2 cut(s)	12, 100
BseRI	GAGGAG	2 cut(s)	305, 584
BseXI	GCAGC	3 cut(s)	340, 461, 658
BsgI	GTGCAG	1 cut(s)	518
BshFI	GGCC	2 cut(s)	131, 326
BslI	CCNNNNNNNGG	1 cut(s)	439
BsnI	GGCC	2 cut(s)	131, 326
Bsp119I	TTCGAA	1 cut(s)	659
Bsp1407I	TGTACA	1 cut(s)	201
Bsp143I	GATC	7 cut(s)	49, 96, 229, 427, 490, 629, 723
Bsp1720I	GCTNAGC	1 cut(s)	339
Bsp19I	CCATGG	1 cut(s)	327
BspACI	CCGC	2 cut(s)	5, 84
BspANI	GGCC	2 cut(s)	131, 326
BspCNI	CTCAG	3 cut(s)	82, 312, 699
BspMI	ACCTGC	3 cut(s)	167, 474, 664
BspPI	GGATC	2 cut(s)	91, 498
BspQI	GCTCTTC	1 cut(s)	306
BspT104I	TTCGAA	1 cut(s)	659
BspTI	CTTAAG	2 cut(s)	170, 686
BsrBI	CCGCTC	1 cut(s)	84
BsrGI	TGTACA	1 cut(s)	201
BsrI	ACTGG	2 cut(s)	12, 100
BssECI	CCNNGG	4 cut(s)	126, 256, 327, 357
BssMI	GATC	7 cut(s)	49, 96, 229, 427, 490, 629, 723
BssT1I	CCWWGG	2 cut(s)	327, 357
Bst2UI	CCWGG	2 cut(s)	257, 599
Bst4CI	ACNGT	2 cut(s)	350, 551
Bst6I	CTCTTC	3 cut(s)	264, 272, 306
BstAFI	CTTAAG	2 cut(s)	170, 686
BstAUI	TGTACA	1 cut(s)	201
BstBAI	YACGTR	1 cut(s)	117
BstBI	TTCGAA	1 cut(s)	659
BstC8I	GCNNGC	1 cut(s)	481
BstDEI	CTNAG	4 cut(s)	69, 299, 339, 707
BstDSI	CCRYGG	1 cut(s)	327
BstF5I	GGATG	1 cut(s)	288
BstHHI	GCGC	1 cut(s)	735
BstKTI	GATC	7 cut(s)	52, 99, 232, 430, 493, 632, 726
BstMBI	GATC	7 cut(s)	49, 96, 229, 427, 490, 629, 723
BstMWI	GCNNNNNNNGC	1 cut(s)	643
BstNI	CCWGG	2 cut(s)	257, 599
BstNSI	RCATGY	1 cut(s)	473
BstSCI	CCNGG	2 cut(s)	255, 597
BstV1I	GCAGC	3 cut(s)	340, 461, 658
BstX2I	RGATCY	2 cut(s)	96, 723
BstXI	CCANNNNNNTGG	1 cut(s)	334
BstYI	RGATCY	2 cut(s)	96, 723
BsuRI	GGCC	2 cut(s)	131, 326
BtgI	CCRYGG	1 cut(s)	327
BtsCI	GGATG	1 cut(s)	288
BtsIMutI	CAGTG	1 cut(s)	19
BveI	ACCTGC	3 cut(s)	167, 474, 664
Cac8I	GCNNGC	1 cut(s)	481
CfoI	GCGC	1 cut(s)	735
Csp6I	GTAC	1 cut(s)	202
CviAII	CATG	3 cut(s)	328, 470, 494
CviQI	GTAC	1 cut(s)	202
DdeI	CTNAG	4 cut(s)	69, 299, 339, 707
DpnI	GATC	7 cut(s)	51, 98, 231, 429, 492, 631, 725
DpnII	GATC	7 cut(s)	49, 96, 229, 427, 490, 629, 723
DraI	TTTAAA	1 cut(s)	543
DraIII	CACNNNGTG	1 cut(s)	210
Eam1104I	CTCTTC	3 cut(s)	264, 272, 306
EarI	CTCTTC	3 cut(s)	264, 272, 306
Eco130I	CCWWGG	2 cut(s)	327, 357
Eco72I	CACGTG	1 cut(s)	117
EcoRI	GAATTC	4 cut(s)	64, 109, 152, 661
EcoRII	CCWGG	2 cut(s)	255, 597
EcoT14I	CCWWGG	2 cut(s)	327, 357
ErhI	CCWWGG	2 cut(s)	327, 357
FaeI	CATG	3 cut(s)	331, 473, 497
FaiI	YATR	7 cut(s)	329, 395, 456, 471, 495, 522, 701
FatI	CATG	3 cut(s)	327, 469, 493
FbaI	TGATCA	1 cut(s)	427
Fnu4HI	GCNGC	5 cut(s)	6, 85, 354, 450, 647
FokI	GGATG	1 cut(s)	295
Fsp4HI	GCNGC	5 cut(s)	6, 85, 354, 450, 647
FspBI	CTAG	3 cut(s)	236, 476, 760
GlaI	GCGC	1 cut(s)	734
GluI	GCNGC	5 cut(s)	6, 85, 354, 450, 647
GsuI	CTGGAG	2 cut(s)	548, 581
HaeIII	GGCC	2 cut(s)	131, 326
HhaI	GCGC	1 cut(s)	735
Hin1II	CATG	3 cut(s)	331, 473, 497
Hin6I	GCGC	1 cut(s)	733
HinP1I	GCGC	1 cut(s)	733
HinfI	GANTC	5 cut(s)	29, 512, 532, 581, 656
HphI	GGTGA	3 cut(s)	148, 286, 422
Hpy166II	GTNNAC	1 cut(s)	204
Hpy188I	TCNGA	1 cut(s)	751
Hpy188III	TCNNGA	5 cut(s)	71, 79, 149, 527, 536
Hpy8I	GTNNAC	1 cut(s)	204
HpyAV	CCTTC	5 cut(s)	316, 397, 443, 604, 706
HpyCH4III	ACNGT	2 cut(s)	350, 551
HpyCH4IV	ACGT	1 cut(s)	116
HpyCH4V	TGCA	4 cut(s)	162, 469, 499, 557
HpyF10VI	GCNNNNNNNGC	1 cut(s)	643
HpyF3I	CTNAG	4 cut(s)	69, 299, 339, 707
HpySE526I	ACGT	1 cut(s)	116
Hsp92II	CATG	3 cut(s)	331, 473, 497
HspAI	GCGC	1 cut(s)	733
Ksp22I	TGATCA	1 cut(s)	427
Kzo9I	GATC	7 cut(s)	49, 96, 229, 427, 490, 629, 723
LguI	GCTCTTC	1 cut(s)	306
Lsp1109I	GCAGC	3 cut(s)	340, 461, 658
MaeI	CTAG	3 cut(s)	236, 476, 760
MaeII	ACGT	1 cut(s)	116
MaeIII	GTNAC	1 cut(s)	14
MalI	GATC	7 cut(s)	51, 98, 231, 429, 492, 631, 725
MbiI	CCGCTC	1 cut(s)	84
MboI	GATC	7 cut(s)	49, 96, 229, 427, 490, 629, 723
MboII	GAAGA	4 cut(s)	281, 289, 320, 323
MfeI	CAATTG	1 cut(s)	558
MflI	RGATCY	2 cut(s)	96, 723
MluCI	AATT	8 cut(s)	64, 109, 152, 332, 381, 558, 614, 661
MlyI	GAGTC	1 cut(s)	590
MmeI	TCCRAC	1 cut(s)	468
MseI	TTAA	4 cut(s)	171, 542, 687, 728
MslI	CAYNNNNRTG	2 cut(s)	468, 750
MspCI	CTTAAG	2 cut(s)	170, 686
MspR9I	CCNGG	2 cut(s)	257, 599
MunI	CAATTG	1 cut(s)	558
MvaI	CCWGG	2 cut(s)	257, 599
MwoI	GCNNNNNNNGC	1 cut(s)	643
NcoI	CCATGG	1 cut(s)	327
NdeII	GATC	7 cut(s)	49, 96, 229, 427, 490, 629, 723
NlaIII	CATG	3 cut(s)	331, 473, 497
NmeAIII	GCCGAG	1 cut(s)	151
NmuCI	GTSAC	1 cut(s)	14
NspI	RCATGY	1 cut(s)	473
NspV	TTCGAA	1 cut(s)	659
PaqCI	CACCTGC	1 cut(s)	167
PciSI	GCTCTTC	1 cut(s)	306
PfeI	GAWTC	4 cut(s)	29, 512, 532, 656
PfoI	TCCNGGA	1 cut(s)	597
PkrI	GCNGC	5 cut(s)	7, 86, 355, 451, 648
PleI	GAGTC	1 cut(s)	589
PmaCI	CACGTG	1 cut(s)	117
PmlI	CACGTG	1 cut(s)	117
PpsI	GAGTC	1 cut(s)	589
Ppu21I	YACGTR	1 cut(s)	117
Psp6I	CCWGG	2 cut(s)	255, 597
PspCI	CACGTG	1 cut(s)	117
PspGI	CCWGG	2 cut(s)	255, 597
PsuI	RGATCY	2 cut(s)	96, 723
RsaI	GTAC	1 cut(s)	203
RsaNI	GTAC	1 cut(s)	202
RseI	CAYNNNNRTG	2 cut(s)	468, 750
SapI	GCTCTTC	1 cut(s)	306
SaqAI	TTAA	4 cut(s)	171, 542, 687, 728
SatI	GCNGC	5 cut(s)	6, 85, 354, 450, 647
Sau3AI	GATC	7 cut(s)	49, 96, 229, 427, 490, 629, 723
SchI	GAGTC	1 cut(s)	590
ScrFI	CCNGG	2 cut(s)	257, 599
SfuI	TTCGAA	1 cut(s)	659
SmiMI	CAYNNNNRTG	2 cut(s)	468, 750
SmlI	CTYRAG	4 cut(s)	170, 250, 398, 686
SmoI	CTYRAG	4 cut(s)	170, 250, 398, 686
Sse9I	AATT	8 cut(s)	64, 109, 152, 332, 381, 558, 614, 661
SsiI	CCGC	2 cut(s)	5, 84
SspMI	CTAG	3 cut(s)	236, 476, 760
StyD4I	CCNGG	2 cut(s)	255, 597
StyI	CCWWGG	2 cut(s)	327, 357
TaaI	ACNGT	2 cut(s)	350, 551
TaiI	ACGT	1 cut(s)	119
TaqI	TCGA	4 cut(s)	48, 584, 659, 665
TasI	AATT	8 cut(s)	64, 109, 152, 332, 381, 558, 614, 661
TatI	WGTACW	1 cut(s)	201
TauI	GCSGC	2 cut(s)	8, 87
TfiI	GAWTC	4 cut(s)	29, 512, 532, 656
Tru1I	TTAA	4 cut(s)	171, 542, 687, 728
Tru9I	TTAA	4 cut(s)	171, 542, 687, 728
TscAI	CASTG	1 cut(s)	19
TseFI	GTSAC	1 cut(s)	14
TseI	GCWGC	3 cut(s)	353, 449, 646
Tsp45I	GTSAC	1 cut(s)	14
TspDTI	ATGAA	2 cut(s)	429, 716
TspRI	CASTG	1 cut(s)	19
Vha464I	CTTAAG	2 cut(s)	170, 686
XapI	RAATTY	4 cut(s)	64, 109, 152, 661
XceI	RCATGY	1 cut(s)	473
XspI	CTAG	3 cut(s)	236, 476, 760

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.