Basic Information

Type: gene

Biological Identity

Species

rosa_laevigata

Chromosome

Chr2

Orthogroup ID

OG0004071

Physical Location & Seq

Genomic Coordinates Forward (+)

50291829 .. 50293904

Gene Structure 2076 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

RLM00000009291

Sequence Viewer

CDS Protein Promoter (2k)

Length: 561 bp

ATGTACACTGAGTCTCTGAACGACCTTGCTGATCAGCTCGAACGGCGTAGCACATGCCAGGGCTTGAAAGAAGAGCTCAAGAGAGTTAAGGATGAATGCCTCGGTAAAGAAGAAGAGCATAGGAAGGCTATGGAATTGGTCAAGCAAGACTGTGCAGCCAAGGTTGAGGAATTGGAGGCTCAAATTAGAGGGTTTCTTGTGGAAAAGGCGAAAAATGAAGCAACCATTGATCACCTTCGACAGGATTTGGCTGCACATAAGTCCCATATGCATGTTATGCAAAGCAGATTGGACAAAGTCCAATTGGATGTGGAAACAAAATATGTTTTTGAGATTCAGGATTTGAAGGACTGTATTGCAATCGAACAGGAGGAGAAAAATGAGTTGAATAGAAAACTCCAGGATTTAGAAAAAGAAATGCTGGTTAGCAGATCAAAGCTTGTGCAGCAGCAACGAGATTCGAATTCAAACTGGCAGGTTGAAACACTTAAGACCAAGCTTATGAAGCTGAGGAAGGAGAATGAGATCTTAAAGCGCAAACTACATTCAGATGAGGGCTAG

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0005575 GO:0005622 GO:0005623 GO:0005737 GO:0005783 GO:0005911 GO:0006810 GO:0008150 GO:0009506 GO:0009987 GO:0010496 GO:0012505 GO:0030054 GO:0043226 GO:0043227 GO:0043229 GO:0043231 GO:0044424 GO:0044444 GO:0044464 GO:0046907 GO:0051179 GO:0051234 GO:0051641 GO:0051649 GO:0055044

KEGG Pathways

Metabolic & Signaling

No pathways identified.

Pfam Domains

Protein Families

No domains found.

Protein Analysis

187

Amino Acids

21.93

Weight (kDa)

5.95

Isoelectric Point (pI)

55.76

Instability Index

Protein Domains (Pfam)

No Pfam domains detected for this protein.

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

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Align Labels (Cladogram)

Image

Tree File

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Publication-ready

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Orthologous Genes (Group: OG0004071)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT4G26020 AT4G26020 AT4G26020
fragaria_vesca	FvH4_4g07070 FvH4_4g07070 FvH4_4g07070 FvH4_4g07070 FvH4_4g07070 FvH4_4g07070 FvH4_4g07070 FvH4_4g07070 FvH4_4g07070 FvH4_4g07070 FvH4_4g07070
malus_domestica	MD16G1247400.v1.1
prunus_persica	Prupe.1G073900_v2.0.a1 Prupe.1G073900_v2.0.a1 Prupe.1G073900_v2.0.a1 Prupe.1G073900_v2.0.a1
pyrus_communis	pycom16g20770
rosa_chinensis	RchiOBHm_Chr4g0399191
rosa_laevigata	RLG00000009291
rosa_multiflora	Rmu_sc0002582.1_g000003 Rmu_sc0024868.1_g000001
rosa_roxburghii	Rroxscaffold_5G00344150
rosa_rugosa	Rorug04G0014800 Rorug04G0014900 Rorug04G0015000
rosa_samantha	Rh4AG092900 Rh4BG090700 Rh4CG101300 Rh4DG085200
rosa_wichuraiana	Rw4G007650

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
Acc36I	ACCTGC	1 cut(s)	466
AcsI	RAATTY	1 cut(s)	463
AfaI	GTAC	1 cut(s)	5
AfiI	CCNNNNNNNGG	1 cut(s)	241
AflII	CTTAAG	1 cut(s)	488
AgsI	TTSAA	5 cut(s)	67, 346, 388, 468, 482
AjnI	CCWGG	2 cut(s)	57, 399
AluBI	AGCT	5 cut(s)	37, 76, 439, 499, 508
AluI	AGCT	5 cut(s)	37, 76, 439, 499, 508
Alw21I	GWGCWC	1 cut(s)	78
Alw26I	GTCTC	1 cut(s)	18
ApeKI	GCWGC	4 cut(s)	155, 251, 445, 448
ApoI	RAATTY	1 cut(s)	463
AspLEI	GCGC	1 cut(s)	537
AsuHPI	GGTGA	1 cut(s)	224
AsuII	TTCGAA	1 cut(s)	461
BanII	GRGCYC	1 cut(s)	78
Bbv12I	GWGCWC	1 cut(s)	78
BbvCI	CCTCAGC	1 cut(s)	509
BbvI	GCAGC	4 cut(s)	167, 238, 457, 460
BceAI	ACGGC	1 cut(s)	59
BciT130I	CCWGG	2 cut(s)	59, 401
BclI	TGATCA	2 cut(s)	31, 229
BcoDI	GTCTC	1 cut(s)	18
BfaI	CTAG	1 cut(s)	559
BfrI	CTTAAG	1 cut(s)	488
BfuAI	ACCTGC	1 cut(s)	466
BglII	AGATCT	1 cut(s)	525
BisI	GCNGC	4 cut(s)	156, 252, 446, 449
BlsI	GCNGC	4 cut(s)	157, 253, 447, 450
Bme1390I	CCNGG	2 cut(s)	59, 401
BmrFI	CCNGG	2 cut(s)	59, 401
BpmI	CTGGAG	1 cut(s)	383
Bpu10I	CCTNAGC	1 cut(s)	509
Bpu14I	TTCGAA	1 cut(s)	461
BpuEI	CTTGAG	1 cut(s)	62
BsaJI	CCNNGG	3 cut(s)	58, 100, 159
Bsc4I	CCNNNNNNNGG	1 cut(s)	241
Bse1I	ACTGG	1 cut(s)	476
BseBI	CCWGG	2 cut(s)	59, 401
BseDI	CCNNGG	3 cut(s)	58, 100, 159
BseGI	GGATG	2 cut(s)	97, 313
BseLI	CCNNNNNNNGG	1 cut(s)	241
BseMII	CTCAG	1 cut(s)	500
BseNI	ACTGG	1 cut(s)	476
BseRI	GAGGAG	1 cut(s)	386
BseXI	GCAGC	4 cut(s)	167, 238, 457, 460
BsgI	GTGCAG	3 cut(s)	174, 237, 464
BsiHKAI	GWGCWC	1 cut(s)	78
BslFI	GGGAC	1 cut(s)	247
BslI	CCNNNNNNNGG	1 cut(s)	241
BsmAI	GTCTC	1 cut(s)	18
BsmFI	GGGAC	1 cut(s)	247
BsmI	GAATGC	1 cut(s)	101
Bsp119I	TTCGAA	1 cut(s)	461
Bsp1286I	GDGCHC	1 cut(s)	78
Bsp1407I	TGTACA	1 cut(s)	3
Bsp143I	GATC	4 cut(s)	31, 229, 431, 525
BspCNI	CTCAG	1 cut(s)	501
BspMI	ACCTGC	1 cut(s)	466
BspQI	GCTCTTC	2 cut(s)	66, 108
BspT104I	TTCGAA	1 cut(s)	461
BspTI	CTTAAG	1 cut(s)	488
BsrGI	TGTACA	1 cut(s)	3
BsrI	ACTGG	1 cut(s)	476
BssECI	CCNNGG	3 cut(s)	58, 100, 159
BssMI	GATC	4 cut(s)	31, 229, 431, 525
BssT1I	CCWWGG	1 cut(s)	159
Bst2UI	CCWGG	2 cut(s)	59, 401
Bst4CI	ACNGT	2 cut(s)	152, 353
Bst6I	CTCTTC	2 cut(s)	66, 108
BstAFI	CTTAAG	1 cut(s)	488
BstAPI	GCANNNNNTGC	1 cut(s)	277
BstAUI	TGTACA	1 cut(s)	3
BstBI	TTCGAA	1 cut(s)	461
BstDEI	CTNAG	2 cut(s)	9, 509
BstENI	CCTNNNNNAGG	1 cut(s)	239
BstF5I	GGATG	2 cut(s)	97, 313
BstHHI	GCGC	1 cut(s)	537
BstKTI	GATC	4 cut(s)	34, 232, 434, 528
BstMAI	GTCTC	1 cut(s)	18
BstMBI	GATC	4 cut(s)	31, 229, 431, 525
BstMWI	GCNNNNNNNGC	4 cut(s)	43, 277, 445, 505
BstNI	CCWGG	2 cut(s)	59, 401
BstNSI	RCATGY	2 cut(s)	57, 275
BstSCI	CCNGG	2 cut(s)	57, 399
BstV1I	GCAGC	4 cut(s)	167, 238, 457, 460
BstX2I	RGATCY	1 cut(s)	525
BstYI	RGATCY	1 cut(s)	525
BtsCI	GGATG	2 cut(s)	97, 313
BtsIMutI	CAGTG	1 cut(s)	6
BveI	ACCTGC	1 cut(s)	466
CfoI	GCGC	1 cut(s)	537
Csp6I	GTAC	1 cut(s)	4
CviAII	CATG	2 cut(s)	54, 272
CviQI	GTAC	1 cut(s)	4
DdeI	CTNAG	2 cut(s)	9, 509
DpnI	GATC	4 cut(s)	33, 231, 433, 527
DpnII	GATC	4 cut(s)	31, 229, 431, 525
Eam1104I	CTCTTC	2 cut(s)	66, 108
EarI	CTCTTC	2 cut(s)	66, 108
Ecl136II	GAGCTC	1 cut(s)	76
Eco130I	CCWWGG	1 cut(s)	159
Eco24I	GRGCYC	1 cut(s)	78
Eco53kI	GAGCTC	1 cut(s)	76
EcoICRI	GAGCTC	1 cut(s)	76
EcoNI	CCTNNNNNAGG	1 cut(s)	239
EcoRI	GAATTC	1 cut(s)	463
EcoRII	CCWGG	2 cut(s)	57, 399
EcoT14I	CCWWGG	1 cut(s)	159
EcoT22I	ATGCAT	1 cut(s)	273
EcoT38I	GRGCYC	1 cut(s)	78
ErhI	CCWWGG	1 cut(s)	159
FaeI	CATG	2 cut(s)	57, 275
FaqI	GGGAC	1 cut(s)	247
FatI	CATG	2 cut(s)	53, 271
FauNDI	CATATG	1 cut(s)	267
FbaI	TGATCA	2 cut(s)	31, 229
Fnu4HI	GCNGC	4 cut(s)	156, 252, 446, 449
FokI	GGATG	2 cut(s)	104, 320
FriOI	GRGCYC	1 cut(s)	78
Fsp4HI	GCNGC	4 cut(s)	156, 252, 446, 449
FspBI	CTAG	1 cut(s)	559
GlaI	GCGC	1 cut(s)	536
GluI	GCNGC	4 cut(s)	156, 252, 446, 449
GsuI	CTGGAG	1 cut(s)	383
HhaI	GCGC	1 cut(s)	537
Hin1II	CATG	2 cut(s)	57, 275
Hin6I	GCGC	1 cut(s)	535
HinP1I	GCGC	1 cut(s)	535
HindIII	AAGCTT	2 cut(s)	437, 497
HinfI	GANTC	3 cut(s)	11, 334, 458
HphI	GGTGA	1 cut(s)	224
Hpy166II	GTNNAC	1 cut(s)	6
Hpy188I	TCNGA	2 cut(s)	18, 550
Hpy188III	TCNNGA	2 cut(s)	79, 338
Hpy8I	GTNNAC	1 cut(s)	6
HpyAV	CCTTC	4 cut(s)	118, 245, 340, 508
HpyCH4III	ACNGT	2 cut(s)	152, 353
HpyCH4V	TGCA	6 cut(s)	155, 254, 271, 280, 359, 445
HpyF10VI	GCNNNNNNNGC	4 cut(s)	43, 277, 445, 505
HpyF3I	CTNAG	2 cut(s)	9, 509
Hsp92II	CATG	2 cut(s)	57, 275
HspAI	GCGC	1 cut(s)	535
Ksp22I	TGATCA	2 cut(s)	31, 229
Kzo9I	GATC	4 cut(s)	31, 229, 431, 525
LguI	GCTCTTC	2 cut(s)	66, 108
Lsp1109I	GCAGC	4 cut(s)	167, 238, 457, 460
MaeI	CTAG	1 cut(s)	559
MalI	GATC	4 cut(s)	33, 231, 433, 527
MboI	GATC	4 cut(s)	31, 229, 431, 525
MboII	GAAGA	3 cut(s)	83, 122, 125
MfeI	CAATTG	1 cut(s)	302
MflI	RGATCY	1 cut(s)	525
MhlI	GDGCHC	1 cut(s)	78
MluCI	AATT	5 cut(s)	134, 170, 183, 302, 463
MlyI	GAGTC	1 cut(s)	20
MnlI	CCTC	7 cut(s)	110, 160, 169, 182, 364, 504, 547
Mph1103I	ATGCAT	1 cut(s)	273
MseI	TTAA	3 cut(s)	87, 489, 530
MslI	CAYNNNNRTG	2 cut(s)	270, 549
MspCI	CTTAAG	1 cut(s)	488
MspR9I	CCNGG	2 cut(s)	59, 401
MunI	CAATTG	1 cut(s)	302
Mva1269I	GAATGC	1 cut(s)	101
MvaI	CCWGG	2 cut(s)	59, 401
MwoI	GCNNNNNNNGC	4 cut(s)	43, 277, 445, 505
NdeI	CATATG	1 cut(s)	267
NdeII	GATC	4 cut(s)	31, 229, 431, 525
NlaIII	CATG	2 cut(s)	57, 275
NsiI	ATGCAT	1 cut(s)	273
NspI	RCATGY	2 cut(s)	57, 275
NspV	TTCGAA	1 cut(s)	461
PciSI	GCTCTTC	2 cut(s)	66, 108
PctI	GAATGC	1 cut(s)	101
PfeI	GAWTC	2 cut(s)	334, 458
PflFI	GACNNNGTC	1 cut(s)	296
PfoI	TCCNGGA	1 cut(s)	399
PkrI	GCNGC	4 cut(s)	157, 253, 447, 450
PleI	GAGTC	1 cut(s)	19
PpsI	GAGTC	1 cut(s)	19
Psp124BI	GAGCTC	1 cut(s)	78
Psp6I	CCWGG	2 cut(s)	57, 399
PspGI	CCWGG	2 cut(s)	57, 399
PsuI	RGATCY	1 cut(s)	525
PsyI	GACNNNGTC	1 cut(s)	296
RsaI	GTAC	1 cut(s)	5
RsaNI	GTAC	1 cut(s)	4
RseI	CAYNNNNRTG	2 cut(s)	270, 549
SacI	GAGCTC	1 cut(s)	78
SapI	GCTCTTC	2 cut(s)	66, 108
SaqAI	TTAA	3 cut(s)	87, 489, 530
SatI	GCNGC	4 cut(s)	156, 252, 446, 449
Sau3AI	GATC	4 cut(s)	31, 229, 431, 525
SchI	GAGTC	1 cut(s)	20
ScrFI	CCNGG	2 cut(s)	59, 401
SduI	GDGCHC	1 cut(s)	78
SetI	ASST	9 cut(s)	27, 39, 78, 165, 237, 441, 480, 501, 510
SfuI	TTCGAA	1 cut(s)	461
SmiMI	CAYNNNNRTG	2 cut(s)	270, 549
SmlI	CTYRAG	2 cut(s)	77, 488
SmoI	CTYRAG	2 cut(s)	77, 488
Sse9I	AATT	5 cut(s)	134, 170, 183, 302, 463
SspMI	CTAG	1 cut(s)	559
SstI	GAGCTC	1 cut(s)	78
StyD4I	CCNGG	2 cut(s)	57, 399
StyI	CCWWGG	1 cut(s)	159
TaaI	ACNGT	2 cut(s)	152, 353
TaqI	TCGA	4 cut(s)	39, 238, 363, 461
TasI	AATT	5 cut(s)	134, 170, 183, 302, 463
TatI	WGTACW	1 cut(s)	3
TfiI	GAWTC	2 cut(s)	334, 458
Tru1I	TTAA	3 cut(s)	87, 489, 530
Tru9I	TTAA	3 cut(s)	87, 489, 530
TscAI	CASTG	1 cut(s)	13
TseI	GCWGC	4 cut(s)	155, 251, 445, 448
TspDTI	ATGAA	3 cut(s)	108, 231, 518
TspRI	CASTG	1 cut(s)	13
Tth111I	GACNNNGTC	1 cut(s)	296
Vha464I	CTTAAG	1 cut(s)	488
XagI	CCTNNNNNAGG	1 cut(s)	239
XapI	RAATTY	1 cut(s)	463
XceI	RCATGY	2 cut(s)	57, 275
XspI	CTAG	1 cut(s)	559
Zsp2I	ATGCAT	1 cut(s)	273

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.