Basic Information

Type: gene

Biological Identity

Species

arabidopsis_thaliana

Chromosome

Orthogroup ID

OG0009317

Physical Location & Seq

Genomic Coordinates Reverse (-)

13313417 .. 13316443

Gene Structure 3027 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

AT4G26310.1

Sequence Viewer

CDS Protein Promoter (2k)

Length: 777 bp

ATGAGAGGGCTGCACCATTTCAAGAGAATCTCAATCTCTCGATCTCTCTTCTCCTTCTCTAATGCCACTTCTCCTGGGGCAGTAACGACTAGGAGGTCTCTTTATTCTTTGAGCAGGTCGTTGTTGTCATCAACCCCGTACGCCGCCGGTGGATGCTGCCGAGAAACGCCTCCGCTTCATTCTCCGTGGTCTGCTCTGCAACGCCGCGGTGTTAAGGTTAACGCGATTCAGCTAAGGGCAGGAAATGTAATTGAGCGAACAGGGCGTACTTTTCGGGTTGTAGAAGCAGAGCATAAGCAACAAGGTAGAGGAGGAGCTTCCATACAGGTTGAGCTTCGTGATGTTGACACTGGGAATAAGCTTAACTTGCGTTTTGGATCTGAGGAGTCGGTTGAGAAAGTTTTTGTTGAAGAGAAATCTTTCACGTGTTTGTATGCAGAGGGAGATACTGCATATCTGATTGAGCCTAATACGTTTGAGCAAGTTGAAGTGCCATTGGACATATTTGGAAAAGCTGCTGTATATTTAAAAGAGGAAATGAAAGTTCAGTTGCAGCTGTATGATGGAAGAGCTTTATCTGCATCTATCCCTAAGCATATCACATGCACAGTTGTAGAAACACAACTTCCAATGAAAGGCCTAACATCAGCTCCTCGGTACAAGAGAGCTCTCCTGGATAATGGTTCCACTATTCAGGTACCATCTTATCTCGAGGCAGGTGAAAAGATTGTGATAAACACTGAGGATGACTCTTTTGTTAAGAGGGACAACAAATGA

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

No ontology terms assigned.

KEGG Pathways

Metabolic & Signaling

No pathways identified.

Pfam Domains

Protein Families

EFP EFP_N Elong-fact-P_C

Protein Analysis

258

Amino Acids

28.69

Weight (kDa)

9.12

Isoelectric Point (pI)

49.53

Instability Index

Protein Domains (Pfam)

Domain Name	Pfam ID	Position	E-value	Description
EFP_N	PF08207	75 - 131	3.1e-16	Elongation factor P (EF-P) KOW-like domain
EFP	PF01132	140 - 191	3.9e-15	Elongation factor P (EF-P) OB domain
Elong-fact-P_C	PF09285	200 - 255	1.5e-16	Elongation factor P, C-terminal

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

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Align Labels (Cladogram)

Image

Tree File

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Publication-ready

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Orthologous Genes (Group: OG0009317)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT4G26310 AT4G26310
fragaria_vesca	FvH4_3g45540 FvH4_3g45540 FvH4_3g45540
malus_domestica	MD03G1004200.v1.1 MD11G1003800.v1.1
prunus_persica	Prupe.6G003800_v2.0.a1 Prupe.6G003800_v2.0.a1
pyrus_communis	pycom11g00380
rosa_chinensis	RchiOBHm_Chr5g0083721
rosa_laevigata	RLG00000037048
rosa_multiflora	Rmu_sc0001287.1_g000003 Rmu_sc0002184.1_g000001
rosa_roxburghii	Rroxscaffold_1G00000860 Rroxscaffold_1G00015100
rosa_rugosa	Rorug05G0485300
rosa_samantha	Rh5AG538500 Rh5BG563800 Rh5CG585800 Rh5DG572100
rosa_wichuraiana	Rw5G050080

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AarI	CACCTGC	1 cut(s)	707
AasI	GACNNNNNNGTC	1 cut(s)	94
Acc36I	ACCTGC	2 cut(s)	105, 707
Acc65I	GGTACC	1 cut(s)	697
AccB1I	GGYRCC	1 cut(s)	697
AccII	CGCG	2 cut(s)	207, 224
AciI	CCGC	4 cut(s)	144, 173, 205, 207
AclWI	GGATC	1 cut(s)	385
AcvI	CACGTG	1 cut(s)	426
AfaI	GTAC	4 cut(s)	140, 268, 659, 699
AfiI	CCNNNNNNNGG	1 cut(s)	635
AflIII	ACRYGT	1 cut(s)	425
AgsI	TTSAA	3 cut(s)	22, 410, 488
AjnI	CCWGG	2 cut(s)	73, 672
AluBI	AGCT	9 cut(s)	232, 317, 334, 361, 515, 556, 572, 650, 668
AluI	AGCT	9 cut(s)	232, 317, 334, 361, 515, 556, 572, 650, 668
Alw21I	GWGCWC	1 cut(s)	670
Alw26I	GTCTC	1 cut(s)	102
AlwI	GGATC	1 cut(s)	385
Ama87I	CYCGRG	1 cut(s)	710
AoxI	GGCC	1 cut(s)	637
ApeKI	GCWGC	4 cut(s)	10, 156, 515, 553
Asp700I	GAANNNNTTC	1 cut(s)	419
Asp718I	GGTACC	1 cut(s)	697
AsuHPI	GGTGA	1 cut(s)	731
AvaI	CYCGRG	1 cut(s)	710
BanI	GGYRCC	1 cut(s)	697
BanII	GRGCYC	1 cut(s)	670
BbrPI	CACGTG	1 cut(s)	426
Bbv12I	GWGCWC	1 cut(s)	670
BbvI	GCAGC	3 cut(s)	143, 502, 565
BccI	CCATC	2 cut(s)	557, 709
BciT130I	CCWGG	2 cut(s)	75, 674
BcoDI	GTCTC	1 cut(s)	102
BfaI	CTAG	1 cut(s)	90
BfuAI	ACCTGC	2 cut(s)	105, 707
BisI	GCNGC	6 cut(s)	11, 144, 157, 205, 516, 554
BlsI	GCNGC	6 cut(s)	12, 145, 158, 206, 517, 555
Bme1390I	CCNGG	2 cut(s)	75, 674
BmeT110I	CYCGRG	1 cut(s)	710
BmiI	GGNNCC	2 cut(s)	685, 699
BmrFI	CCNGG	2 cut(s)	75, 674
BmrI	ACTGGG	1 cut(s)	360
BmsI	GCATC	2 cut(s)	143, 590
BmuI	ACTGGG	1 cut(s)	360
BplI	GAGNNNNNCTC	2 cut(s)	734, 766
Bpu10I	CCTNAGC	2 cut(s)	233, 591
BsaAI	YACGTR	1 cut(s)	426
BsaI	GGTCTC	1 cut(s)	102
BsaJI	CCNNGG	4 cut(s)	74, 185, 205, 653
BsaXI	ACNNNNNCTCC	2 cut(s)	634, 664
Bsc4I	CCNNNNNNNGG	1 cut(s)	635
Bse118I	RCCGGY	1 cut(s)	146
Bse1I	ACTGG	1 cut(s)	355
BseBI	CCWGG	2 cut(s)	75, 674
BseDI	CCNNGG	4 cut(s)	74, 185, 205, 653
BseGI	GGATG	2 cut(s)	158, 751
BseLI	CCNNNNNNNGG	1 cut(s)	635
BseMII	CTCAG	2 cut(s)	372, 732
BseNI	ACTGG	1 cut(s)	355
BseRI	GAGGAG	4 cut(s)	324, 327, 398, 642
BseXI	GCAGC	3 cut(s)	143, 502, 565
Bsh1236I	CGCG	2 cut(s)	207, 224
BshFI	GGCC	1 cut(s)	639
BshNI	GGYRCC	1 cut(s)	697
BsiHKAI	GWGCWC	1 cut(s)	670
BsiHKCI	CYCGRG	1 cut(s)	710
BsiSI	CCGG	1 cut(s)	147
BsiWI	CGTACG	1 cut(s)	138
BslI	CCNNNNNNNGG	1 cut(s)	635
BsmAI	GTCTC	1 cut(s)	102
BsnI	GGCC	1 cut(s)	639
Bso31I	GGTCTC	1 cut(s)	102
BsoBI	CYCGRG	1 cut(s)	710
Bsp1286I	GDGCHC	1 cut(s)	670
Bsp143I	GATC	2 cut(s)	41, 377
BspACI	CCGC	4 cut(s)	144, 173, 205, 207
BspANI	GGCC	1 cut(s)	639
BspCNI	CTCAG	2 cut(s)	373, 733
BspFNI	CGCG	2 cut(s)	207, 224
BspLI	GGNNCC	2 cut(s)	685, 699
BspMI	ACCTGC	2 cut(s)	105, 707
BspPI	GGATC	1 cut(s)	385
BspQI	GCTCTTC	1 cut(s)	562
BspT107I	GGYRCC	1 cut(s)	697
BspTNI	GGTCTC	1 cut(s)	102
BsrFI	RCCGGY	1 cut(s)	146
BsrI	ACTGG	1 cut(s)	355
BssAI	RCCGGY	1 cut(s)	146
BssECI	CCNNGG	4 cut(s)	74, 185, 205, 653
BssMI	GATC	2 cut(s)	41, 377
Bst2UI	CCWGG	2 cut(s)	75, 674
Bst4CI	ACNGT	1 cut(s)	610
Bst6I	CTCTTC	3 cut(s)	53, 405, 562
BstBAI	YACGTR	1 cut(s)	426
BstDEI	CTNAG	4 cut(s)	233, 381, 591, 741
BstDSI	CCRYGG	2 cut(s)	185, 205
BstF5I	GGATG	2 cut(s)	158, 751
BstFNI	CGCG	2 cut(s)	207, 224
BstKTI	GATC	2 cut(s)	44, 380
BstMAI	GTCTC	1 cut(s)	102
BstMBI	GATC	2 cut(s)	41, 377
BstMWI	GCNNNNNNNGC	3 cut(s)	262, 367, 578
BstNI	CCWGG	2 cut(s)	75, 674
BstNSI	RCATGY	1 cut(s)	606
BstSCI	CCNGG	2 cut(s)	73, 672
BstUI	CGCG	2 cut(s)	207, 224
BstV1I	GCAGC	3 cut(s)	143, 502, 565
BstX2I	RGATCY	1 cut(s)	377
BstYI	RGATCY	1 cut(s)	377
BsuRI	GGCC	1 cut(s)	639
BtgI	CCRYGG	2 cut(s)	185, 205
BtsCI	GGATG	2 cut(s)	158, 751
BtsIMutI	CAGTG	2 cut(s)	348, 738
BveI	ACCTGC	2 cut(s)	105, 707
Cfr10I	RCCGGY	1 cut(s)	146
Cfr42I	CCGCGG	1 cut(s)	208
Csp6I	GTAC	4 cut(s)	139, 267, 658, 698
CviAII	CATG	1 cut(s)	603
CviQI	GTAC	4 cut(s)	139, 267, 658, 698
DdeI	CTNAG	4 cut(s)	233, 381, 591, 741
DpnI	GATC	2 cut(s)	43, 379
DpnII	GATC	2 cut(s)	41, 377
DraI	TTTAAA	1 cut(s)	528
DrdI	GACNNNNNNGTC	1 cut(s)	94
DseDI	GACNNNNNNGTC	1 cut(s)	94
Eam1104I	CTCTTC	3 cut(s)	53, 405, 562
EarI	CTCTTC	3 cut(s)	53, 405, 562
Ecl136II	GAGCTC	1 cut(s)	668
Eco147I	AGGCCT	1 cut(s)	639
Eco24I	GRGCYC	1 cut(s)	670
Eco31I	GGTCTC	1 cut(s)	102
Eco53kI	GAGCTC	1 cut(s)	668
Eco72I	CACGTG	1 cut(s)	426
Eco88I	CYCGRG	1 cut(s)	710
EcoICRI	GAGCTC	1 cut(s)	668
EcoRII	CCWGG	2 cut(s)	73, 672
EcoT38I	GRGCYC	1 cut(s)	670
FaeI	CATG	1 cut(s)	606
FaiI	YATR	9 cut(s)	294, 323, 435, 454, 503, 523, 561, 597, 604
FalI	AAGNNNNNCTT	2 cut(s)	350, 382
FatI	CATG	1 cut(s)	602
Fnu4HI	GCNGC	6 cut(s)	11, 144, 157, 205, 516, 554
FokI	GGATG	2 cut(s)	165, 758
FriOI	GRGCYC	1 cut(s)	670
Fsp4HI	GCNGC	6 cut(s)	11, 144, 157, 205, 516, 554
FspBI	CTAG	1 cut(s)	90
GluI	GCNGC	6 cut(s)	11, 144, 157, 205, 516, 554
HaeIII	GGCC	1 cut(s)	639
HapII	CCGG	1 cut(s)	147
Hin1II	CATG	1 cut(s)	606
HincII	GTYRAC	2 cut(s)	220, 346
HindII	GTYRAC	2 cut(s)	220, 346
HindIII	AAGCTT	1 cut(s)	359
HinfI	GANTC	4 cut(s)	27, 226, 386, 749
HpaI	GTTAAC	1 cut(s)	220
HpaII	CCGG	1 cut(s)	147
HphI	GGTGA	1 cut(s)	731
Hpy166II	GTNNAC	2 cut(s)	220, 346
Hpy188I	TCNGA	2 cut(s)	382, 459
Hpy188III	TCNNGA	4 cut(s)	22, 39, 338, 710
Hpy8I	GTNNAC	2 cut(s)	220, 346
HpyAV	CCTTC	1 cut(s)	64
HpyCH4III	ACNGT	1 cut(s)	610
HpyCH4IV	ACGT	2 cut(s)	425, 473
HpyCH4V	TGCA	7 cut(s)	13, 199, 437, 452, 553, 581, 606
HpyF10VI	GCNNNNNNNGC	3 cut(s)	262, 367, 578
HpyF3I	CTNAG	4 cut(s)	233, 381, 591, 741
HpySE526I	ACGT	2 cut(s)	425, 473
Hsp92II	CATG	1 cut(s)	606
KpnI	GGTACC	1 cut(s)	701
KspAI	GTTAAC	1 cut(s)	220
KspI	CCGCGG	1 cut(s)	208
Kzo9I	GATC	2 cut(s)	41, 377
LguI	GCTCTTC	1 cut(s)	562
LmnI	GCTCC	2 cut(s)	314, 655
Lsp1109I	GCAGC	3 cut(s)	143, 502, 565
LweI	GCATC	2 cut(s)	143, 590
MaeI	CTAG	1 cut(s)	90
MaeII	ACGT	2 cut(s)	425, 473
MaeIII	GTNAC	1 cut(s)	82
MalI	GATC	2 cut(s)	43, 379
MboI	GATC	2 cut(s)	41, 377
MboII	GAAGA	3 cut(s)	40, 422, 579
MflI	RGATCY	1 cut(s)	377
MhlI	GDGCHC	1 cut(s)	670
MluCI	AATT	1 cut(s)	249
MlyI	GAGTC	2 cut(s)	395, 743
MroXI	GAANNNNTTC	1 cut(s)	419
MseI	TTAA	5 cut(s)	213, 219, 363, 527, 759
MspA1I	CMGCKG	2 cut(s)	207, 556
MspI	CCGG	1 cut(s)	147
MspR9I	CCNGG	2 cut(s)	75, 674
MvaI	CCWGG	2 cut(s)	75, 674
MvnI	CGCG	2 cut(s)	207, 224
MwoI	GCNNNNNNNGC	3 cut(s)	262, 367, 578
NdeII	GATC	2 cut(s)	41, 377
NlaIII	CATG	1 cut(s)	606
NlaIV	GGNNCC	2 cut(s)	685, 699
NmeAIII	GCCGAG	1 cut(s)	185
NspI	RCATGY	1 cut(s)	606
PaeR7I	CTCGAG	1 cut(s)	710
PaqCI	CACCTGC	1 cut(s)	707
PceI	AGGCCT	1 cut(s)	639
PciSI	GCTCTTC	1 cut(s)	562
PdmI	GAANNNNTTC	1 cut(s)	419
PfeI	GAWTC	2 cut(s)	27, 226
Pfl23II	CGTACG	1 cut(s)	138
PfoI	TCCNGGA	1 cut(s)	672
PkrI	GCNGC	6 cut(s)	12, 145, 158, 206, 517, 555
PleI	GAGTC	2 cut(s)	394, 743
PmaCI	CACGTG	1 cut(s)	426
PmlI	CACGTG	1 cut(s)	426
PpsI	GAGTC	2 cut(s)	394, 743
Ppu21I	YACGTR	1 cut(s)	426
Psp124BI	GAGCTC	1 cut(s)	670
Psp6I	CCWGG	2 cut(s)	73, 672
PspCI	CACGTG	1 cut(s)	426
PspGI	CCWGG	2 cut(s)	73, 672
PspLI	CGTACG	1 cut(s)	138
PspN4I	GGNNCC	2 cut(s)	685, 699
PsrI	GAACNNNNNNTAC	2 cut(s)	250, 282
PsuI	RGATCY	1 cut(s)	377
PvuII	CAGCTG	1 cut(s)	556
RsaI	GTAC	4 cut(s)	140, 268, 659, 699
RsaNI	GTAC	4 cut(s)	139, 267, 658, 698
SacI	GAGCTC	1 cut(s)	670
SacII	CCGCGG	1 cut(s)	208
SapI	GCTCTTC	1 cut(s)	562
SaqAI	TTAA	5 cut(s)	213, 219, 363, 527, 759
SatI	GCNGC	6 cut(s)	11, 144, 157, 205, 516, 554
Sau3AI	GATC	2 cut(s)	41, 377
SchI	GAGTC	2 cut(s)	395, 743
ScrFI	CCNGG	2 cut(s)	75, 674
SduI	GDGCHC	1 cut(s)	670
SfaNI	GCATC	2 cut(s)	143, 590
Sfr274I	CTCGAG	1 cut(s)	710
Sfr303I	CCGCGG	1 cut(s)	208
SgrAI	CRCCGGYG	1 cut(s)	146
SgrBI	CCGCGG	1 cut(s)	208
SlaI	CTCGAG	1 cut(s)	710
SmlI	CTYRAG	1 cut(s)	710
SmoI	CTYRAG	1 cut(s)	710
Sse9I	AATT	1 cut(s)	249
SseBI	AGGCCT	1 cut(s)	639
SsiI	CCGC	4 cut(s)	144, 173, 205, 207
SspMI	CTAG	1 cut(s)	90
SstI	GAGCTC	1 cut(s)	670
StuI	AGGCCT	1 cut(s)	639
StyD4I	CCNGG	2 cut(s)	73, 672
TaaI	ACNGT	1 cut(s)	610
TaiI	ACGT	2 cut(s)	428, 476
TaqI	TCGA	2 cut(s)	40, 711
TasI	AATT	1 cut(s)	249
TauI	GCSGC	2 cut(s)	146, 207
TfiI	GAWTC	2 cut(s)	27, 226
Tru1I	TTAA	5 cut(s)	213, 219, 363, 527, 759
Tru9I	TTAA	5 cut(s)	213, 219, 363, 527, 759
TscAI	CASTG	2 cut(s)	355, 745
TseI	GCWGC	4 cut(s)	10, 156, 515, 553
TspDTI	ATGAA	3 cut(s)	167, 554, 647
TspGWI	ACGGA	1 cut(s)	174
TspRI	CASTG	2 cut(s)	355, 745
XceI	RCATGY	1 cut(s)	606
XhoI	CTCGAG	1 cut(s)	710
XmnI	GAANNNNTTC	1 cut(s)	419
XspI	CTAG	1 cut(s)	90

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.