Rh5CG585800

Elongation factor

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
rosa_samantha
Chr5C
OG0009317
Physical Location & Seq
Reverse (-)
83078980 .. 83083314
4335 bp
Loading structure...
UTR
Exon/CDS
Intron
Rh5CG585800.1

Sequence Viewer

Length: 693 bp
ATGCAAGCGGTGGCTGCCAAACTCACTCGCCCTCACTTCCTCACCAGAACCTTAACCACCCTCACTCTCTCTTCTTCTTCTACTCTCTCCAATTTGCTATCCTCCCCCGGCCGTGACGCCGCCACCATCACCCACGCGACCAACGAGTGTCTCGCCCGCCGAACATCTCTGCTCTCGTCTCCTCCTTGGTCCGCCACTCAACACCGCGGCGCCAGAGTCCAAGGCGCCGATGTGAGACCTGGCAATGTGATTCAAAAGAAAGATCGTATTTACCAGGTGATAAAGGTAGAGCATTCACATGAAGGAAGAGGAAAGGCCAACATTAAGCTGGAGCTTCGTGATGTGGACTCTGGGAATAAGACATCCCAAAGATTGGGGACAGAGGAGACAGTTGATAGAGTATTTGTCATGTCAAAAAGTTACATTTACATGTGCACAGACCGGGATGGAAAAGTATTATTGATGGATCCTGATACGCTTGATCAGCTTGAAGTGAATGAAGACGTATTTGGAAAGAATGCTAAATACCTACAAGAAGAAATGAAAGTTAGAGTGGAGCTGTTTAACGGGACCCCTTTATCTGCATCAGTTCCAAAACATGTGACCTGCACTGTCAAGGAAGCACAGCCTCCTATAAAGGGGATTGCAGCAACACCTAAGTACGTTTTCTTTGTACAAATGCTGCTGTATTAA
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
No ontology terms assigned.
KEGG Pathways
Metabolic & Signaling
No pathways identified.
Pfam Domains
Protein Families
EFP EFP_N Elong-fact-P_C

Protein Analysis

230

Amino Acids

25.58

Weight (kDa)

9.34

Isoelectric Point (pI)

32.02

Instability Index
Protein Domains (Pfam)
Domain Name Pfam ID Position E-value Description
EFP_N PF08207 76 - 131 1.3e-12 Elongation factor P (EF-P) KOW-like domain
EFP PF01132 151 - 193 7.6e-12 Elongation factor P (EF-P) OB domain
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
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Publication-ready
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Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
Acc36I ACCTGC 1 cut(s) 614
AccB1I GGYRCC 2 cut(s) 209, 224
AccB7I CCANNNNNTGG 1 cut(s) 373
AccII CGCG 2 cut(s) 137, 207
AciI CCGC 6 cut(s) 8, 120, 157, 192, 205, 207
AclWI GGATC 2 cut(s) 461, 474
AcoI YGGCCR 1 cut(s) 109
AcyI GRCGYC 3 cut(s) 117, 210, 225
AfaI GTAC 2 cut(s) 662, 675
AfiI CCNNNNNNNGG 2 cut(s) 373, 638
AflIII ACRYGT 2 cut(s) 429, 598
AgsI TTSAA 2 cut(s) 254, 491
AjnI CCWGG 2 cut(s) 238, 273
AjuI GAANNNNNNNTTGG 2 cut(s) 492, 524
AluBI AGCT 4 cut(s) 328, 334, 487, 559
AluI AGCT 4 cut(s) 328, 334, 487, 559
Alw21I GWGCWC 1 cut(s) 437
Alw26I GTCTC 4 cut(s) 155, 183, 229, 380
Alw44I GTGCAC 1 cut(s) 433
AlwI GGATC 2 cut(s) 461, 474
AoxI GGCC 2 cut(s) 109, 315
ApaLI GTGCAC 1 cut(s) 433
ApeKI GCWGC 3 cut(s) 14, 647, 682
AspLEI GCGC 2 cut(s) 212, 227
AspS9I GGNCC 2 cut(s) 189, 570
AsuC2I CCSGG 2 cut(s) 108, 443
AsuHPI GGTGA 3 cut(s) 34, 121, 289
AvaII GGWCC 2 cut(s) 189, 570
BaeGI GKGCMC 1 cut(s) 437
BamHI GGATCC 1 cut(s) 466
BanI GGYRCC 2 cut(s) 209, 224
BbsI GAAGAC 1 cut(s) 507
Bbv12I GWGCWC 1 cut(s) 437
BbvI GCAGC 2 cut(s) 659, 669
BccI CCATC 3 cut(s) 134, 440, 457
BceAI ACGGC 1 cut(s) 96
BciT130I CCWGG 2 cut(s) 240, 275
BclI TGATCA 1 cut(s) 481
BcnI CCSGG 2 cut(s) 108, 443
BcoDI GTCTC 4 cut(s) 155, 183, 229, 380
BfoI RGCGCY 2 cut(s) 213, 228
BfuAI ACCTGC 1 cut(s) 614
BisI GCNGC 5 cut(s) 15, 120, 208, 648, 683
BlsI GCNGC 5 cut(s) 16, 121, 209, 649, 684
Bme1390I CCNGG 4 cut(s) 108, 240, 275, 443
Bme18I GGWCC 2 cut(s) 189, 570
BmgT120I GGNCC 2 cut(s) 189, 570
BmiI GGNNCC 5 cut(s) 211, 226, 468, 571, 572
BmrFI CCNGG 4 cut(s) 108, 240, 275, 443
BmsI GCATC 1 cut(s) 593
BpiI GAAGAC 1 cut(s) 507
BpmI CTGGAG 1 cut(s) 350
BpuMI CCSGG 2 cut(s) 108, 443
BsaHI GRCGYC 3 cut(s) 117, 210, 225
BsaI GGTCTC 1 cut(s) 229
BsaJI CCNNGG 4 cut(s) 106, 185, 205, 220
Bsc4I CCNNNNNNNGG 2 cut(s) 373, 638
Bse3DI GCAATG 1 cut(s) 250
BseBI CCWGG 2 cut(s) 240, 275
BseDI CCNNGG 4 cut(s) 106, 185, 205, 220
BseGI GGATG 2 cut(s) 362, 451
BseLI CCNNNNNNNGG 2 cut(s) 373, 638
BseMI GCAATG 1 cut(s) 250
BseRI GAGGAG 2 cut(s) 171, 398
BseSI GKGCMC 1 cut(s) 437
BseX3I CGGCCG 1 cut(s) 109
BseXI GCAGC 2 cut(s) 659, 669
BsgI GTGCAG 1 cut(s) 592
Bsh1236I CGCG 2 cut(s) 137, 207
Bsh1285I CGRYCG 1 cut(s) 112
BshFI GGCC 2 cut(s) 111, 317
BshNI GGYRCC 2 cut(s) 209, 224
BsiEI CGRYCG 1 cut(s) 112
BsiHKAI GWGCWC 1 cut(s) 437
BsiSI CCGG 2 cut(s) 108, 442
BslFI GGGAC 2 cut(s) 391, 583
BslI CCNNNNNNNGG 2 cut(s) 373, 638
BsmAI GTCTC 4 cut(s) 155, 183, 229, 380
BsmBI CGTCTC 1 cut(s) 183
BsmFI GGGAC 2 cut(s) 391, 583
BsmI GAATGC 2 cut(s) 292, 523
BsnI GGCC 2 cut(s) 111, 317
Bso31I GGTCTC 1 cut(s) 229
Bsp1286I GDGCHC 1 cut(s) 437
Bsp1407I TGTACA 1 cut(s) 673
Bsp143I GATC 3 cut(s) 262, 466, 481
BspACI CCGC 6 cut(s) 8, 120, 157, 192, 205, 207
BspANI GGCC 2 cut(s) 111, 317
BspFNI CGCG 2 cut(s) 137, 207
BspLI GGNNCC 5 cut(s) 211, 226, 468, 571, 572
BspMI ACCTGC 1 cut(s) 614
BspPI GGATC 2 cut(s) 461, 474
BspT107I GGYRCC 2 cut(s) 209, 224
BspTNI GGTCTC 1 cut(s) 229
BsrDI GCAATG 1 cut(s) 250
BsrGI TGTACA 1 cut(s) 673
BssECI CCNNGG 4 cut(s) 106, 185, 205, 220
BssMI GATC 3 cut(s) 262, 466, 481
BssNI GRCGYC 3 cut(s) 117, 210, 225
BssT1I CCWWGG 2 cut(s) 185, 220
Bst2UI CCWGG 2 cut(s) 240, 275
Bst4CI ACNGT 2 cut(s) 391, 613
Bst6I CTCTTC 2 cut(s) 76, 301
BstACI GRCGYC 3 cut(s) 117, 210, 225
BstAUI TGTACA 1 cut(s) 673
BstC8I GCNNGC 2 cut(s) 6, 157
BstDEI CTNAG 1 cut(s) 657
BstDSI CCRYGG 1 cut(s) 205
BstF5I GGATG 2 cut(s) 362, 451
BstFNI CGCG 2 cut(s) 137, 207
BstH2I RGCGCY 2 cut(s) 213, 228
BstHHI GCGC 2 cut(s) 212, 227
BstKTI GATC 3 cut(s) 265, 469, 484
BstMAI GTCTC 4 cut(s) 155, 183, 229, 380
BstMBI GATC 3 cut(s) 262, 466, 481
BstMCI CGRYCG 1 cut(s) 112
BstMWI GCNNNNNNNGC 2 cut(s) 14, 484
BstNI CCWGG 2 cut(s) 240, 275
BstNSI RCATGY 2 cut(s) 433, 602
BstSCI CCNGG 4 cut(s) 106, 238, 273, 441
BstSLI GKGCMC 1 cut(s) 437
BstUI CGCG 2 cut(s) 137, 207
BstV1I GCAGC 2 cut(s) 659, 669
BstV2I GAAGAC 1 cut(s) 507
BstX2I RGATCY 1 cut(s) 466
BstYI RGATCY 1 cut(s) 466
BstZI CGGCCG 1 cut(s) 109
BsuRI GGCC 2 cut(s) 111, 317
BtgI CCRYGG 1 cut(s) 205
BtsCI GGATG 2 cut(s) 362, 451
BtsIMutI CAGTG 1 cut(s) 609
BveI ACCTGC 1 cut(s) 614
Cac8I GCNNGC 2 cut(s) 6, 157
CfoI GCGC 2 cut(s) 212, 227
Cfr13I GGNCC 2 cut(s) 189, 570
Cfr42I CCGCGG 1 cut(s) 208
CseI GACGC 1 cut(s) 125
CsiI ACCWGGT 1 cut(s) 273
Csp6I GTAC 2 cut(s) 661, 674
CviAII CATG 4 cut(s) 299, 409, 430, 599
CviJI RGCY 8 cut(s) 14, 111, 317, 328, 334, 487, 559, 628
CviKI_1 RGCY 8 cut(s) 14, 111, 317, 328, 334, 487, 559, 628
CviQI GTAC 2 cut(s) 661, 674
DdeI CTNAG 1 cut(s) 657
DinI GGCGCC 2 cut(s) 211, 226
DpnI GATC 3 cut(s) 264, 468, 483
DpnII GATC 3 cut(s) 262, 466, 481
EaeI YGGCCR 1 cut(s) 109
EagI CGGCCG 1 cut(s) 109
Eam1104I CTCTTC 2 cut(s) 76, 301
EarI CTCTTC 2 cut(s) 76, 301
EciI GGCGGA 1 cut(s) 181
EclXI CGGCCG 1 cut(s) 109
Eco130I CCWWGG 2 cut(s) 185, 220
Eco31I GGTCTC 1 cut(s) 229
Eco47I GGWCC 2 cut(s) 189, 570
Eco52I CGGCCG 1 cut(s) 109
EcoO109I RGGNCCY 1 cut(s) 570
EcoRII CCWGG 2 cut(s) 238, 273
EcoT14I CCWWGG 2 cut(s) 185, 220
EgeI GGCGCC 2 cut(s) 211, 226
EheI GGCGCC 2 cut(s) 211, 226
ErhI CCWWGG 2 cut(s) 185, 220
Esp3I CGTCTC 1 cut(s) 183
FaeI CATG 4 cut(s) 302, 412, 433, 602
FaiI YATR 5 cut(s) 300, 410, 431, 600, 635
FaqI GGGAC 2 cut(s) 391, 583
FatI CATG 4 cut(s) 298, 408, 429, 598
FauI CCCGC 1 cut(s) 164
FbaI TGATCA 1 cut(s) 481
Fnu4HI GCNGC 5 cut(s) 15, 120, 208, 648, 683
FokI GGATG 2 cut(s) 349, 458
Fsp4HI GCNGC 5 cut(s) 15, 120, 208, 648, 683
GlaI GCGC 2 cut(s) 211, 226
GluI GCNGC 5 cut(s) 15, 120, 208, 648, 683
GsuI CTGGAG 1 cut(s) 350
HaeII RGCGCY 2 cut(s) 213, 228
HaeIII GGCC 2 cut(s) 111, 317
HapII CCGG 2 cut(s) 108, 442
HgaI GACGC 1 cut(s) 125
HhaI GCGC 2 cut(s) 212, 227
Hin1I GRCGYC 3 cut(s) 117, 210, 225
Hin1II CATG 4 cut(s) 302, 412, 433, 602
Hin6I GCGC 2 cut(s) 210, 225
HinP1I GCGC 2 cut(s) 210, 225
HinfI GANTC 3 cut(s) 216, 250, 347
HpaII CCGG 2 cut(s) 108, 442
HphI GGTGA 3 cut(s) 34, 121, 289
Hpy166II GTNNAC 2 cut(s) 346, 435
Hpy188III TCNNGA 2 cut(s) 338, 470
Hpy8I GTNNAC 2 cut(s) 346, 435
HpyAV CCTTC 1 cut(s) 296
HpyCH4III ACNGT 2 cut(s) 391, 613
HpyCH4IV ACGT 2 cut(s) 504, 663
HpyCH4V TGCA 5 cut(s) 4, 435, 584, 609, 647
HpyF10VI GCNNNNNNNGC 2 cut(s) 14, 484
HpyF3I CTNAG 1 cut(s) 657
HpySE526I ACGT 2 cut(s) 504, 663
Hsp92I GRCGYC 3 cut(s) 117, 210, 225
Hsp92II CATG 4 cut(s) 302, 412, 433, 602
HspAI GCGC 2 cut(s) 210, 225
KasI GGCGCC 2 cut(s) 209, 224
KflI GGGWCCC 1 cut(s) 570
Ksp22I TGATCA 1 cut(s) 481
KspI CCGCGG 1 cut(s) 208
Kzo9I GATC 3 cut(s) 262, 466, 481
LmnI GCTCC 2 cut(s) 331, 556
Lsp1109I GCAGC 2 cut(s) 659, 669
LweI GCATC 1 cut(s) 593
MabI ACCWGGT 1 cut(s) 273
MaeII ACGT 2 cut(s) 504, 663
MaeIII GTNAC 3 cut(s) 113, 419, 601
MalI GATC 3 cut(s) 264, 468, 483
MboI GATC 3 cut(s) 262, 466, 481
MboII GAAGA 6 cut(s) 63, 66, 69, 318, 512, 548
MflI RGATCY 1 cut(s) 466
MhlI GDGCHC 1 cut(s) 437
MluCI AATT 1 cut(s) 91
Mly113I GGCGCC 2 cut(s) 210, 225
MlyI GAGTC 2 cut(s) 225, 341
MnlI CCTC 8 cut(s) 42, 50, 71, 112, 192, 302, 376, 639
MseI TTAA 4 cut(s) 53, 324, 564, 691
MslI CAYNNNNRTG 2 cut(s) 297, 428
MspA1I CMGCKG 1 cut(s) 207
MspI CCGG 2 cut(s) 108, 442
MspR9I CCNGG 4 cut(s) 108, 240, 275, 443
Mva1269I GAATGC 2 cut(s) 292, 523
MvaI CCWGG 2 cut(s) 240, 275
MvnI CGCG 2 cut(s) 137, 207
MwoI GCNNNNNNNGC 2 cut(s) 14, 484
NarI GGCGCC 2 cut(s) 210, 225
NciI CCSGG 2 cut(s) 108, 443
NdeII GATC 3 cut(s) 262, 466, 481
NlaIII CATG 4 cut(s) 302, 412, 433, 602
NlaIV GGNNCC 5 cut(s) 211, 226, 468, 571, 572
NmuCI GTSAC 2 cut(s) 113, 601
NspI RCATGY 2 cut(s) 433, 602
PciI ACATGT 2 cut(s) 429, 598
PcsI WCGNNNNNNNCGW 1 cut(s) 141
PctI GAATGC 2 cut(s) 292, 523
PfeI GAWTC 1 cut(s) 250
PflMI CCANNNNNTGG 1 cut(s) 373
PkrI GCNGC 5 cut(s) 16, 121, 209, 649, 684
PleI GAGTC 2 cut(s) 224, 341
PluTI GGCGCC 2 cut(s) 213, 228
PpsI GAGTC 2 cut(s) 224, 341
PpuMI RGGWCCY 1 cut(s) 570
PscI ACATGT 2 cut(s) 429, 598
Psp5II RGGWCCY 1 cut(s) 570
Psp6I CCWGG 2 cut(s) 238, 273
PspGI CCWGG 2 cut(s) 238, 273
PspN4I GGNNCC 5 cut(s) 211, 226, 468, 571, 572
PspPI GGNCC 2 cut(s) 189, 570
PspPPI RGGWCCY 1 cut(s) 570
PsuI RGATCY 1 cut(s) 466
RsaI GTAC 2 cut(s) 662, 675
RsaNI GTAC 2 cut(s) 661, 674
RseI CAYNNNNRTG 2 cut(s) 297, 428
SacII CCGCGG 1 cut(s) 208
SaqAI TTAA 4 cut(s) 53, 324, 564, 691
SatI GCNGC 5 cut(s) 15, 120, 208, 648, 683
Sau3AI GATC 3 cut(s) 262, 466, 481
Sau96I GGNCC 2 cut(s) 189, 570
SchI GAGTC 2 cut(s) 225, 341
ScrFI CCNGG 4 cut(s) 108, 240, 275, 443
SduI GDGCHC 1 cut(s) 437
SexAI ACCWGGT 1 cut(s) 273
SfaNI GCATC 1 cut(s) 593
SfoI GGCGCC 2 cut(s) 211, 226
Sfr303I CCGCGG 1 cut(s) 208
SgrBI CCGCGG 1 cut(s) 208
SinI GGWCC 2 cut(s) 189, 570
SmiMI CAYNNNNRTG 2 cut(s) 297, 428
Sse9I AATT 1 cut(s) 91
SsiI CCGC 6 cut(s) 8, 120, 157, 192, 205, 207
SspDI GGCGCC 2 cut(s) 209, 224
StyD4I CCNGG 4 cut(s) 106, 238, 273, 441
StyI CCWWGG 2 cut(s) 185, 220
TaaI ACNGT 2 cut(s) 391, 613
TaiI ACGT 2 cut(s) 507, 666
TasI AATT 1 cut(s) 91
TatI WGTACW 1 cut(s) 673
TauI GCSGC 2 cut(s) 122, 210
TfiI GAWTC 1 cut(s) 250
Tru1I TTAA 4 cut(s) 53, 324, 564, 691
Tru9I TTAA 4 cut(s) 53, 324, 564, 691
TscAI CASTG 1 cut(s) 616
TseFI GTSAC 2 cut(s) 113, 601
TseI GCWGC 3 cut(s) 14, 647, 682
Tsp45I GTSAC 2 cut(s) 113, 601
TspDTI ATGAA 3 cut(s) 315, 513, 557
TspRI CASTG 1 cut(s) 616
Van91I CCANNNNNTGG 1 cut(s) 373
VneI GTGCAC 1 cut(s) 433
VpaK11BI GGWCC 2 cut(s) 189, 570
XceI RCATGY 2 cut(s) 433, 602
XcmI CCANNNNNNNNNTGG 1 cut(s) 325
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.