Basic Information

Type: gene

Biological Identity

Species

malus_domestica

Chromosome

Chr11

Orthogroup ID

OG0009317

Physical Location & Seq

Genomic Coordinates Forward (+)

321988 .. 325264

Gene Structure 3277 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

MD11G1003800.v1.1.491

Sequence Viewer

CDS Protein Promoter (2k)

Length: 783 bp

ATGCAGCCGCTGGCAAAGCTGAGCAAGAATCTCCCTCGCCCTCTCTTCCTCCTCGCTCCGAGAACCTTAACCACCCTCACTTCTTCTTCTTCTTCTTTATCGCACTCACTAACCTCACCGGGCTGTGATTCCACCATCACCCGCAGCACCAACACGTGTTTCACCGGAAGAACTCTACTTCGCTCTCCTTGGTCCGCCATTCAACAACGCGGAGCCGTCGTCCACGGCGCCGATGTAAAACCTGGAAATGTCATTGCAAGGAATGATCGTATTTACCAGGTGTTAAAGGCAGATCATTCACATGAAGGAAGAGGAAAAGCGGTTGTTAAGGTGGAGGTTCGTGATGTTGACTCTGGGAACAAGACATCCTTACGATTGTTGACGGATGAGCAAATTGATAAAGTATTTGTTGAATCAAAAACTTACGTTTACATGTGCACAGATCGTGATGGCATTGTAGTATTGATAGACCCTGATACTCTTGATCAACTCGATGTGCCTGAAGACTTGTTCGGAAAGAAGGCTAAATACCTACAAGAGGAAATGAAAGTGACAGTGGAGCTGTATAATGATAAACCTCTATCCGTTAAAGTTCCGAAACACGTGACATGCGTTGTCAAGGAAGCACAAAATCCTGTGAGGGGGACTGCACAAGCACCTAAGGAAATATTAGGTGTGATGGAAAACGGCTTCACTGTCAAAGTACCACCTCACATTGTAGAAGGTGAAGCTGTGGTGGTTGACACTGATGACGACTCTTATGTTAAAAGGGCCAAGCCATAA

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

No ontology terms assigned.

KEGG Pathways

Metabolic & Signaling

No pathways identified.

Pfam Domains

Protein Families

EFP EFP_N Elong-fact-P_C

Protein Analysis

261

Amino Acids

28.64

Weight (kDa)

8.25

Isoelectric Point (pI)

29.5

Instability Index

Protein Domains (Pfam)

Domain Name	Pfam ID	Position	E-value	Description
EFP_N	PF08207	77 - 131	6.9e-13	Elongation factor P (EF-P) KOW-like domain
EFP	PF01132	153 - 194	2.2e-11	Elongation factor P (EF-P) OB domain
Elong-fact-P_C	PF09285	202 - 257	2.7e-11	Elongation factor P, C-terminal

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

Style Settings

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Align Labels (Cladogram)

Image

Tree File

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Publication-ready

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Orthologous Genes (Group: OG0009317)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT4G26310 AT4G26310
fragaria_vesca	FvH4_3g45540 FvH4_3g45540 FvH4_3g45540
malus_domestica	MD03G1004200.v1.1 MD11G1003800.v1.1
prunus_persica	Prupe.6G003800_v2.0.a1 Prupe.6G003800_v2.0.a1
pyrus_communis	pycom11g00380
rosa_chinensis	RchiOBHm_Chr5g0083721
rosa_laevigata	RLG00000037048
rosa_multiflora	Rmu_sc0001287.1_g000003 Rmu_sc0002184.1_g000001
rosa_roxburghii	Rroxscaffold_1G00000860 Rroxscaffold_1G00015100
rosa_rugosa	Rorug05G0485300
rosa_samantha	Rh5AG538500 Rh5BG563800 Rh5CG585800 Rh5DG572100
rosa_wichuraiana	Rw5G050080

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AccB1I	GGYRCC	1 cut(s)	227
AccII	CGCG	1 cut(s)	210
AciI	CCGC	5 cut(s)	8, 142, 195, 210, 320
AcuI	CTGAAG	1 cut(s)	522
AcvI	CACGTG	2 cut(s)	156, 604
AcyI	GRCGYC	1 cut(s)	228
AfaI	GTAC	1 cut(s)	705
AfiI	CCNNNNNNNGG	2 cut(s)	538, 641
AflIII	ACRYGT	4 cut(s)	153, 155, 432, 601
AgsI	TTSAA	2 cut(s)	203, 413
AjnI	CCWGG	2 cut(s)	241, 276
AjuI	GAANNNNNNNTTGG	2 cut(s)	143, 175
AloI	GAACNNNNNNTCC	2 cut(s)	350, 382
AluBI	AGCT	3 cut(s)	19, 562, 731
AluI	AGCT	3 cut(s)	19, 562, 731
Alw21I	GWGCWC	1 cut(s)	440
Alw44I	GTGCAC	1 cut(s)	436
AlwNI	CAGNNNCTG	1 cut(s)	10
AoxI	GGCC	1 cut(s)	771
ApaLI	GTGCAC	1 cut(s)	436
ApeKI	GCWGC	2 cut(s)	4, 144
AspLEI	GCGC	1 cut(s)	230
AspS9I	GGNCC	2 cut(s)	192, 771
AsuC2I	CCSGG	1 cut(s)	120
AsuHPI	GGTGA	4 cut(s)	108, 130, 154, 737
AvaII	GGWCC	1 cut(s)	192
AxyI	CCTNAGG	1 cut(s)	660
BaeGI	GKGCMC	1 cut(s)	440
BanI	GGYRCC	1 cut(s)	227
BarI	GAAGNNNNNNTAC	2 cut(s)	512, 544
BbrPI	CACGTG	2 cut(s)	156, 604
BbsI	GAAGAC	1 cut(s)	510
Bbv12I	GWGCWC	1 cut(s)	440
BbvI	GCAGC	2 cut(s)	16, 156
BccI	CCATC	3 cut(s)	143, 443, 673
BceAI	ACGGC	3 cut(s)	200, 241, 703
BciT130I	CCWGG	2 cut(s)	243, 278
BclI	TGATCA	1 cut(s)	484
BcnI	CCSGG	1 cut(s)	120
BfoI	RGCGCY	1 cut(s)	231
BisI	GCNGC	3 cut(s)	5, 8, 145
BlpI	GCTNAGC	1 cut(s)	20
BlsI	GCNGC	3 cut(s)	6, 9, 146
Bme1390I	CCNGG	3 cut(s)	120, 243, 278
Bme18I	GGWCC	1 cut(s)	192
BmgT120I	GGNCC	2 cut(s)	192, 771
BmiI	GGNNCC	2 cut(s)	214, 229
BmrFI	CCNGG	3 cut(s)	120, 243, 278
BpiI	GAAGAC	1 cut(s)	510
Bpu1102I	GCTNAGC	1 cut(s)	20
BpuMI	CCSGG	1 cut(s)	120
BsaAI	YACGTR	2 cut(s)	156, 604
BsaHI	GRCGYC	1 cut(s)	228
BsaJI	CCNNGG	2 cut(s)	188, 223
BsaWI	WCCGGW	1 cut(s)	164
BsaXI	ACNNNNNCTCC	2 cut(s)	204, 234
Bsc4I	CCNNNNNNNGG	2 cut(s)	538, 641
Bse21I	CCTNAGG	1 cut(s)	660
Bse3DI	GCAATG	1 cut(s)	252
BseBI	CCWGG	2 cut(s)	243, 278
BseDI	CCNNGG	2 cut(s)	188, 223
BseGI	GGATG	2 cut(s)	365, 391
BseLI	CCNNNNNNNGG	2 cut(s)	538, 641
BseMI	GCAATG	1 cut(s)	252
BseMII	CTCAG	1 cut(s)	11
BseRI	GAGGAG	1 cut(s)	41
BseSI	GKGCMC	1 cut(s)	440
BseXI	GCAGC	2 cut(s)	16, 156
BsgI	GTGCAG	1 cut(s)	633
Bsh1236I	CGCG	1 cut(s)	210
BshFI	GGCC	1 cut(s)	773
BshNI	GGYRCC	1 cut(s)	227
BsiHKAI	GWGCWC	1 cut(s)	440
BsiSI	CCGG	2 cut(s)	119, 165
BslFI	GGGAC	1 cut(s)	658
BslI	CCNNNNNNNGG	2 cut(s)	538, 641
BsmFI	GGGAC	1 cut(s)	658
BsnI	GGCC	1 cut(s)	773
Bsp1286I	GDGCHC	1 cut(s)	440
Bsp143I	GATC	4 cut(s)	265, 292, 442, 484
Bsp1720I	GCTNAGC	1 cut(s)	20
BspACI	CCGC	5 cut(s)	8, 142, 195, 210, 320
BspANI	GGCC	1 cut(s)	773
BspCNI	CTCAG	1 cut(s)	12
BspFNI	CGCG	1 cut(s)	210
BspLI	GGNNCC	2 cut(s)	214, 229
BspT107I	GGYRCC	1 cut(s)	227
BsrDI	GCAATG	1 cut(s)	252
BssECI	CCNNGG	2 cut(s)	188, 223
BssMI	GATC	4 cut(s)	265, 292, 442, 484
BssNI	GRCGYC	1 cut(s)	228
BssT1I	CCWWGG	1 cut(s)	188
Bst2UI	CCWGG	2 cut(s)	243, 278
Bst4CI	ACNGT	2 cut(s)	556, 697
Bst6I	CTCTTC	2 cut(s)	50, 304
BstACI	GRCGYC	1 cut(s)	228
BstBAI	YACGTR	2 cut(s)	156, 604
BstC8I	GCNNGC	1 cut(s)	12
BstDEI	CTNAG	2 cut(s)	20, 660
BstDSI	CCRYGG	1 cut(s)	223
BstENI	CCTNNNNNAGG	1 cut(s)	536
BstF5I	GGATG	2 cut(s)	365, 391
BstFNI	CGCG	1 cut(s)	210
BstH2I	RGCGCY	1 cut(s)	231
BstHHI	GCGC	1 cut(s)	230
BstKTI	GATC	4 cut(s)	268, 295, 445, 487
BstMBI	GATC	4 cut(s)	265, 292, 442, 484
BstMWI	GCNNNNNNNGC	1 cut(s)	16
BstNI	CCWGG	2 cut(s)	243, 278
BstNSI	RCATGY	2 cut(s)	436, 612
BstSCI	CCNGG	3 cut(s)	118, 241, 276
BstSLI	GKGCMC	1 cut(s)	440
BstUI	CGCG	1 cut(s)	210
BstV1I	GCAGC	2 cut(s)	16, 156
BstV2I	GAAGAC	1 cut(s)	510
Bsu36I	CCTNAGG	1 cut(s)	660
BsuRI	GGCC	1 cut(s)	773
BtgI	CCRYGG	1 cut(s)	223
BtsCI	GGATG	2 cut(s)	365, 391
BtsIMutI	CAGTG	3 cut(s)	561, 693, 744
Cac8I	GCNNGC	1 cut(s)	12
CaiI	CAGNNNCTG	1 cut(s)	10
CfoI	GCGC	1 cut(s)	230
Cfr13I	GGNCC	2 cut(s)	192, 771
CsiI	ACCWGGT	1 cut(s)	276
Csp6I	GTAC	1 cut(s)	704
CviAII	CATG	3 cut(s)	302, 433, 609
CviQI	GTAC	1 cut(s)	704
DdeI	CTNAG	2 cut(s)	20, 660
DinI	GGCGCC	1 cut(s)	229
DpnI	GATC	4 cut(s)	267, 294, 444, 486
DpnII	GATC	4 cut(s)	265, 292, 442, 484
Eam1104I	CTCTTC	2 cut(s)	50, 304
EarI	CTCTTC	2 cut(s)	50, 304
EciI	GGCGGA	1 cut(s)	184
Eco130I	CCWWGG	1 cut(s)	188
Eco47I	GGWCC	1 cut(s)	192
Eco57I	CTGAAG	1 cut(s)	522
Eco72I	CACGTG	2 cut(s)	156, 604
Eco81I	CCTNAGG	1 cut(s)	660
EcoNI	CCTNNNNNAGG	1 cut(s)	536
EcoRII	CCWGG	2 cut(s)	241, 276
EcoT14I	CCWWGG	1 cut(s)	188
EgeI	GGCGCC	1 cut(s)	229
EheI	GGCGCC	1 cut(s)	229
ErhI	CCWWGG	1 cut(s)	188
FaeI	CATG	3 cut(s)	305, 436, 612
FaiI	YATR	6 cut(s)	303, 434, 567, 610, 762, 781
FalI	AAGNNNNNCTT	2 cut(s)	353, 385
FaqI	GGGAC	1 cut(s)	658
FatI	CATG	3 cut(s)	301, 432, 608
FauI	CCCGC	1 cut(s)	149
FbaI	TGATCA	1 cut(s)	484
Fnu4HI	GCNGC	3 cut(s)	5, 8, 145
FokI	GGATG	2 cut(s)	352, 398
Fsp4HI	GCNGC	3 cut(s)	5, 8, 145
GlaI	GCGC	1 cut(s)	229
GluI	GCNGC	3 cut(s)	5, 8, 145
HaeII	RGCGCY	1 cut(s)	231
HaeIII	GGCC	1 cut(s)	773
HapII	CCGG	2 cut(s)	119, 165
HhaI	GCGC	1 cut(s)	230
Hin1I	GRCGYC	1 cut(s)	228
Hin1II	CATG	3 cut(s)	305, 436, 612
Hin6I	GCGC	1 cut(s)	228
HinP1I	GCGC	1 cut(s)	228
HincII	GTYRAC	3 cut(s)	349, 381, 742
HindII	GTYRAC	3 cut(s)	349, 381, 742
HinfI	GANTC	5 cut(s)	28, 128, 350, 413, 755
HpaII	CCGG	2 cut(s)	119, 165
HphI	GGTGA	4 cut(s)	108, 130, 154, 737
Hpy166II	GTNNAC	6 cut(s)	223, 349, 381, 430, 438, 742
Hpy188I	TCNGA	3 cut(s)	60, 515, 597
Hpy188III	TCNNGA	3 cut(s)	341, 446, 482
Hpy8I	GTNNAC	6 cut(s)	223, 349, 381, 430, 438, 742
Hpy99I	CGWCG	1 cut(s)	221
HpyAV	CCTTC	3 cut(s)	299, 514, 716
HpyCH4III	ACNGT	2 cut(s)	556, 697
HpyCH4IV	ACGT	3 cut(s)	155, 426, 603
HpyCH4V	TGCA	4 cut(s)	4, 257, 438, 650
HpyF10VI	GCNNNNNNNGC	1 cut(s)	16
HpyF3I	CTNAG	2 cut(s)	20, 660
HpySE526I	ACGT	3 cut(s)	155, 426, 603
Hsp92I	GRCGYC	1 cut(s)	228
Hsp92II	CATG	3 cut(s)	305, 436, 612
HspAI	GCGC	1 cut(s)	228
KasI	GGCGCC	1 cut(s)	227
Ksp22I	TGATCA	1 cut(s)	484
Kzo9I	GATC	4 cut(s)	265, 292, 442, 484
LmnI	GCTCC	3 cut(s)	61, 212, 559
Lsp1109I	GCAGC	2 cut(s)	16, 156
MabI	ACCWGGT	1 cut(s)	276
MaeII	ACGT	3 cut(s)	155, 426, 603
MaeIII	GTNAC	2 cut(s)	550, 604
MalI	GATC	4 cut(s)	267, 294, 444, 486
MboI	GATC	4 cut(s)	265, 292, 442, 484
MboII	GAAGA	8 cut(s)	37, 75, 78, 81, 84, 180, 321, 515
MhlI	GDGCHC	1 cut(s)	440
MluCI	AATT	1 cut(s)	393
Mly113I	GGCGCC	1 cut(s)	228
MlyI	GAGTC	2 cut(s)	344, 749
MseI	TTAA	5 cut(s)	68, 284, 327, 588, 765
MslI	CAYNNNNRTG	1 cut(s)	300
MspA1I	CMGCKG	1 cut(s)	10
MspI	CCGG	2 cut(s)	119, 165
MspR9I	CCNGG	3 cut(s)	120, 243, 278
MvaI	CCWGG	2 cut(s)	243, 278
MvnI	CGCG	1 cut(s)	210
MwoI	GCNNNNNNNGC	1 cut(s)	16
NarI	GGCGCC	1 cut(s)	228
NciI	CCSGG	1 cut(s)	120
NdeII	GATC	4 cut(s)	265, 292, 442, 484
NlaIII	CATG	3 cut(s)	305, 436, 612
NlaIV	GGNNCC	2 cut(s)	214, 229
NmuCI	GTSAC	2 cut(s)	550, 604
NspI	RCATGY	2 cut(s)	436, 612
PciI	ACATGT	1 cut(s)	432
PcsI	WCGNNNNNNNCGW	1 cut(s)	609
PfeI	GAWTC	3 cut(s)	28, 128, 413
PkrI	GCNGC	3 cut(s)	6, 9, 146
PleI	GAGTC	2 cut(s)	344, 749
PluTI	GGCGCC	1 cut(s)	231
PmaCI	CACGTG	2 cut(s)	156, 604
PmlI	CACGTG	2 cut(s)	156, 604
PpsI	GAGTC	2 cut(s)	344, 749
Ppu21I	YACGTR	2 cut(s)	156, 604
PscI	ACATGT	1 cut(s)	432
Psp6I	CCWGG	2 cut(s)	241, 276
PspCI	CACGTG	2 cut(s)	156, 604
PspGI	CCWGG	2 cut(s)	241, 276
PspN4I	GGNNCC	2 cut(s)	214, 229
PspPI	GGNCC	2 cut(s)	192, 771
PstNI	CAGNNNCTG	1 cut(s)	10
RsaI	GTAC	1 cut(s)	705
RsaNI	GTAC	1 cut(s)	704
RseI	CAYNNNNRTG	1 cut(s)	300
SaqAI	TTAA	5 cut(s)	68, 284, 327, 588, 765
SatI	GCNGC	3 cut(s)	5, 8, 145
Sau3AI	GATC	4 cut(s)	265, 292, 442, 484
Sau96I	GGNCC	2 cut(s)	192, 771
SchI	GAGTC	2 cut(s)	344, 749
ScrFI	CCNGG	3 cut(s)	120, 243, 278
SduI	GDGCHC	1 cut(s)	440
SexAI	ACCWGGT	1 cut(s)	276
SfoI	GGCGCC	1 cut(s)	229
SinI	GGWCC	1 cut(s)	192
SmiMI	CAYNNNNRTG	1 cut(s)	300
Sse9I	AATT	1 cut(s)	393
SsiI	CCGC	5 cut(s)	8, 142, 195, 210, 320
SspDI	GGCGCC	1 cut(s)	227
SspI	AATATT	1 cut(s)	669
StyD4I	CCNGG	3 cut(s)	118, 241, 276
StyI	CCWWGG	1 cut(s)	188
TaaI	ACNGT	2 cut(s)	556, 697
TaiI	ACGT	3 cut(s)	158, 429, 606
TaqI	TCGA	1 cut(s)	492
TasI	AATT	1 cut(s)	393
TauI	GCSGC	1 cut(s)	10
TfiI	GAWTC	3 cut(s)	28, 128, 413
Tru1I	TTAA	5 cut(s)	68, 284, 327, 588, 765
Tru9I	TTAA	5 cut(s)	68, 284, 327, 588, 765
TscAI	CASTG	3 cut(s)	561, 700, 751
TseFI	GTSAC	2 cut(s)	550, 604
TseI	GCWGC	2 cut(s)	4, 144
Tsp45I	GTSAC	2 cut(s)	550, 604
TspDTI	ATGAA	2 cut(s)	318, 560
TspGWI	ACGGA	2 cut(s)	398, 574
TspRI	CASTG	3 cut(s)	561, 700, 751
VneI	GTGCAC	1 cut(s)	436
VpaK11BI	GGWCC	1 cut(s)	192
XagI	CCTNNNNNAGG	1 cut(s)	536
XceI	RCATGY	2 cut(s)	436, 612

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.