Basic Information

Type: gene

Biological Identity

Species

rosa_rugosa

Chromosome

GWHBQTZ00000005

Orthogroup ID

OG0009317

Physical Location & Seq

Genomic Coordinates Reverse (-)

66894210 .. 66895327

Gene Structure 1118 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

Rorug05G0485300.1

Sequence Viewer

CDS Protein Promoter (2k)

Length: 747 bp

ATGGGTGTCCCACTAATGAAGCAACAAAGAATAATCAAAACAGTATATAAGCTGGTTAGAATAGCCGTCCCCGAGTTACCTCTACTTGTGATAATAGTGGACGTGACTGTGGCCAGATTGGGTTGTTTTGAGGATGATGCCGATTACATTAGTAGGACTAGAAGTGAAATTAGGGAATCCATTGAAACTTCTATATTCTATAGTTTTGCTCATAACACAAATAAGGTTACTCCGGCAGCTACATCATCATTTGAGCATTTGGAGAAAGTGAGGCTCTATGGTTTGGAAGAAGCTACTCTCAGTCTTAGACAAATCCCCTGCTGTGCTATTTGTTTGCAGGATTTTACAGAAGGTCCTGAAGAACTAATTACCTGTTTGCCGTGCAAACACTATTATCATTTAGCTTGTATTGTCAAGAGCCTGAAAATCCGTCACACGTGTCCCTTGTGCCGATACCCAATGCCTATAATTGCTGAAGTGTCGGGTAAAACTCGAGAAGTTTTTGCAGTACCAATGCTAAACCCTAGCCGCCATGGGGTAGGGCTCCAACATCAGCATCTAGCGCCGATCCTAAGAGGGATTGTCCTCCCCGCAATTGGAGGATGTTATGCAGCCTTCCAACATGGACCGGTTTTGACGAACACTAGTCTGAAATTGCACAAGTATGGATTTGGATCTATCTTCCACTCTATGGGCATGTCATCGGGCTGCAGCGAGTTCTCGAACAGTTTTGTGGAAATAGGTTAG

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

No ontology terms assigned.

KEGG Pathways

Metabolic & Signaling

No pathways identified.

Pfam Domains

Protein Families

EFP EFP_N Elong-fact-P_C

Protein Analysis

248

Amino Acids

27.58

Weight (kDa)

8.27

Isoelectric Point (pI)

47.34

Instability Index

Protein Domains (Pfam)

Domain Name	Pfam ID	Position	E-value	Description
zf-RING_2	PF13639	107 - 151	4.7e-09	Ring finger domain
zf-RING_11	PF17123	108 - 137	7.6e-08	RING-like zinc finger

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

Style Settings

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Align Labels (Cladogram)

Image

Tree File

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Publication-ready

iTOL Interactive Tree Of Life · Most popular EvolView Flexible annotations MEGA Desktop phylogenetics suite FigTree Desktop tree editor

Orthologous Genes (Group: OG0009317)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT4G26310 AT4G26310
fragaria_vesca	FvH4_3g45540 FvH4_3g45540 FvH4_3g45540
malus_domestica	MD03G1004200.v1.1 MD11G1003800.v1.1
prunus_persica	Prupe.6G003800_v2.0.a1 Prupe.6G003800_v2.0.a1
pyrus_communis	pycom11g00380
rosa_chinensis	RchiOBHm_Chr5g0083721
rosa_laevigata	RLG00000037048
rosa_multiflora	Rmu_sc0001287.1_g000003 Rmu_sc0002184.1_g000001
rosa_roxburghii	Rroxscaffold_1G00000860 Rroxscaffold_1G00015100
rosa_rugosa	Rorug05G0485300
rosa_samantha	Rh5AG538500 Rh5BG563800 Rh5CG585800 Rh5DG572100
rosa_wichuraiana	Rw5G050080

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AccB7I	CCANNNNNTGG	1 cut(s)	691
AciI	CCGC	2 cut(s)	529, 591
AclWI	GGATC	2 cut(s)	562, 682
AcoI	YGGCCR	1 cut(s)	111
AcuI	CTGAAG	2 cut(s)	378, 495
AcvI	CACGTG	1 cut(s)	438
AfaI	GTAC	1 cut(s)	510
AfiI	CCNNNNNNNGG	3 cut(s)	535, 596, 691
AflIII	ACRYGT	2 cut(s)	435, 437
AgeI	ACCGGT	1 cut(s)	628
AgsI	TTSAA	1 cut(s)	185
AhlI	ACTAGT	1 cut(s)	644
AjiI	CACGTC	1 cut(s)	103
AluBI	AGCT	4 cut(s)	52, 239, 293, 404
AluI	AGCT	4 cut(s)	52, 239, 293, 404
AlwI	GGATC	2 cut(s)	562, 682
Ama87I	CYCGRG	2 cut(s)	71, 492
AoxI	GGCC	1 cut(s)	111
ApeKI	GCWGC	4 cut(s)	236, 611, 708, 711
AsiGI	ACCGGT	1 cut(s)	628
AspLEI	GCGC	1 cut(s)	565
AspS9I	GGNCC	2 cut(s)	353, 626
AvaI	CYCGRG	2 cut(s)	71, 492
AvaII	GGWCC	2 cut(s)	353, 626
BalI	TGGCCA	1 cut(s)	113
BanII	GRGCYC	1 cut(s)	546
BbrPI	CACGTG	1 cut(s)	438
BbvI	GCAGC	4 cut(s)	248, 623, 695, 723
BceAI	ACGGC	2 cut(s)	50, 364
BcuI	ACTAGT	1 cut(s)	644
BfaI	CTAG	4 cut(s)	159, 525, 560, 645
BfmI	CTRYAG	2 cut(s)	199, 709
BfoI	RGCGCY	1 cut(s)	566
BisI	GCNGC	5 cut(s)	237, 529, 612, 709, 712
BlsI	GCNGC	5 cut(s)	238, 530, 613, 710, 713
Bme18I	GGWCC	2 cut(s)	353, 626
BmeT110I	CYCGRG	2 cut(s)	71, 492
BmgBI	CACGTC	1 cut(s)	103
BmgT120I	GGNCC	2 cut(s)	353, 626
BmiI	GGNNCC	1 cut(s)	545
BmsI	GCATC	2 cut(s)	127, 565
BsaAI	YACGTR	1 cut(s)	438
BsaBI	GATNNNNATC	1 cut(s)	673
BsaJI	CCNNGG	1 cut(s)	532
BsaWI	WCCGGW	1 cut(s)	628
Bsc4I	CCNNNNNNNGG	3 cut(s)	535, 596, 691
Bse118I	RCCGGY	1 cut(s)	628
Bse8I	GATNNNNATC	1 cut(s)	673
BseDI	CCNNGG	1 cut(s)	532
BseGI	GGATG	2 cut(s)	139, 608
BseJI	GATNNNNATC	1 cut(s)	673
BseLI	CCNNNNNNNGG	3 cut(s)	535, 596, 691
BseMII	CTCAG	1 cut(s)	313
BseXI	GCAGC	4 cut(s)	248, 623, 695, 723
BshFI	GGCC	1 cut(s)	113
BshTI	ACCGGT	1 cut(s)	628
BsiHKCI	CYCGRG	2 cut(s)	71, 492
BsiSI	CCGG	2 cut(s)	233, 629
BslFI	GGGAC	2 cut(s)	53, 426
BslI	CCNNNNNNNGG	3 cut(s)	535, 596, 691
BsmFI	GGGAC	2 cut(s)	53, 426
BsnI	GGCC	1 cut(s)	113
BsoBI	CYCGRG	2 cut(s)	71, 492
Bsp1286I	GDGCHC	1 cut(s)	546
Bsp143I	GATC	2 cut(s)	567, 674
Bsp19I	CCATGG	1 cut(s)	532
BspACI	CCGC	2 cut(s)	529, 591
BspANI	GGCC	1 cut(s)	113
BspCNI	CTCAG	1 cut(s)	312
BspLI	GGNNCC	1 cut(s)	545
BspMAI	CTGCAG	1 cut(s)	713
BspPI	GGATC	2 cut(s)	562, 682
BsrFI	RCCGGY	1 cut(s)	628
BssAI	RCCGGY	1 cut(s)	628
BssECI	CCNNGG	1 cut(s)	532
BssMI	GATC	2 cut(s)	567, 674
BssT1I	CCWWGG	1 cut(s)	532
Bst4CI	ACNGT	3 cut(s)	43, 109, 728
BstBAI	YACGTR	1 cut(s)	438
BstDEI	CTNAG	3 cut(s)	299, 305, 572
BstDSI	CCRYGG	1 cut(s)	532
BstF5I	GGATG	2 cut(s)	139, 608
BstH2I	RGCGCY	1 cut(s)	566
BstHHI	GCGC	1 cut(s)	565
BstKTI	GATC	2 cut(s)	570, 677
BstMBI	GATC	2 cut(s)	567, 674
BstMWI	GCNNNNNNNGC	1 cut(s)	562
BstNSI	RCATGY	1 cut(s)	700
BstSFI	CTRYAG	2 cut(s)	199, 709
BstV1I	GCAGC	4 cut(s)	248, 623, 695, 723
BstX2I	RGATCY	1 cut(s)	674
BstYI	RGATCY	1 cut(s)	674
BsuRI	GGCC	1 cut(s)	113
BtgI	CCRYGG	1 cut(s)	532
BtrI	CACGTC	1 cut(s)	103
BtsCI	GGATG	2 cut(s)	139, 608
CfoI	GCGC	1 cut(s)	565
Cfr10I	RCCGGY	1 cut(s)	628
Cfr13I	GGNCC	2 cut(s)	353, 626
Csp6I	GTAC	1 cut(s)	509
CspAI	ACCGGT	1 cut(s)	628
CviAII	CATG	3 cut(s)	533, 623, 697
CviQI	GTAC	1 cut(s)	509
DdeI	CTNAG	3 cut(s)	299, 305, 572
DpnI	GATC	2 cut(s)	569, 676
DpnII	GATC	2 cut(s)	567, 674
EaeI	YGGCCR	1 cut(s)	111
Eco130I	CCWWGG	1 cut(s)	532
Eco24I	GRGCYC	1 cut(s)	546
Eco47I	GGWCC	2 cut(s)	353, 626
Eco57I	CTGAAG	2 cut(s)	378, 495
Eco72I	CACGTG	1 cut(s)	438
Eco88I	CYCGRG	2 cut(s)	71, 492
EcoO109I	RGGNCCY	1 cut(s)	353
EcoT14I	CCWWGG	1 cut(s)	532
EcoT38I	GRGCYC	1 cut(s)	546
ErhI	CCWWGG	1 cut(s)	532
FaeI	CATG	3 cut(s)	536, 626, 700
FaqI	GGGAC	2 cut(s)	53, 426
FatI	CATG	3 cut(s)	532, 622, 696
FauI	CCCGC	1 cut(s)	598
Fnu4HI	GCNGC	5 cut(s)	237, 529, 612, 709, 712
FokI	GGATG	2 cut(s)	146, 615
FriOI	GRGCYC	1 cut(s)	546
Fsp4HI	GCNGC	5 cut(s)	237, 529, 612, 709, 712
FspBI	CTAG	4 cut(s)	159, 525, 560, 645
GlaI	GCGC	1 cut(s)	564
GluI	GCNGC	5 cut(s)	237, 529, 612, 709, 712
HaeII	RGCGCY	1 cut(s)	566
HaeIII	GGCC	1 cut(s)	113
HapII	CCGG	2 cut(s)	233, 629
HhaI	GCGC	1 cut(s)	565
Hin1II	CATG	3 cut(s)	536, 626, 700
Hin6I	GCGC	1 cut(s)	563
HinP1I	GCGC	1 cut(s)	563
HinfI	GANTC	1 cut(s)	176
HpaII	CCGG	2 cut(s)	233, 629
Hpy166II	GTNNAC	1 cut(s)	100
Hpy188I	TCNGA	1 cut(s)	651
Hpy188III	TCNNGA	4 cut(s)	356, 415, 494, 721
Hpy8I	GTNNAC	1 cut(s)	100
HpyAV	CCTTC	2 cut(s)	344, 625
HpyCH4III	ACNGT	3 cut(s)	43, 109, 728
HpyCH4IV	ACGT	2 cut(s)	102, 437
HpyCH4V	TGCA	6 cut(s)	337, 384, 506, 611, 658, 711
HpyF10VI	GCNNNNNNNGC	1 cut(s)	562
HpyF3I	CTNAG	3 cut(s)	299, 305, 572
HpySE526I	ACGT	2 cut(s)	102, 437
Hsp92II	CATG	3 cut(s)	536, 626, 700
HspAI	GCGC	1 cut(s)	563
Kzo9I	GATC	2 cut(s)	567, 674
LmnI	GCTCC	1 cut(s)	549
LpnPI	CCDG	9 cut(s)	38, 127, 246, 323, 331, 369, 385, 434, 642
Lsp1109I	GCAGC	4 cut(s)	248, 623, 695, 723
LweI	GCATC	2 cut(s)	127, 565
MaeI	CTAG	4 cut(s)	159, 525, 560, 645
MaeII	ACGT	2 cut(s)	102, 437
MaeIII	GTNAC	4 cut(s)	75, 103, 226, 431
MalI	GATC	2 cut(s)	569, 676
MboI	GATC	2 cut(s)	567, 674
MboII	GAAGA	3 cut(s)	299, 371, 673
MfeI	CAATTG	1 cut(s)	594
MflI	RGATCY	1 cut(s)	674
MhlI	GDGCHC	1 cut(s)	546
MlsI	TGGCCA	1 cut(s)	113
MluCI	AATT	5 cut(s)	168, 366, 468, 594, 653
MluNI	TGGCCA	1 cut(s)	113
MmeI	TCCRAC	2 cut(s)	571, 643
MnlI	CCTC	6 cut(s)	90, 124, 264, 569, 593, 596
Mox20I	TGGCCA	1 cut(s)	113
MscI	TGGCCA	1 cut(s)	113
MslI	CAYNNNNRTG	1 cut(s)	663
Msp20I	TGGCCA	1 cut(s)	113
MspI	CCGG	2 cut(s)	233, 629
MunI	CAATTG	1 cut(s)	594
MwoI	GCNNNNNNNGC	1 cut(s)	562
NcoI	CCATGG	1 cut(s)	532
NdeII	GATC	2 cut(s)	567, 674
NlaIII	CATG	3 cut(s)	536, 626, 700
NlaIV	GGNNCC	1 cut(s)	545
NmuCI	GTSAC	2 cut(s)	103, 431
NspI	RCATGY	1 cut(s)	700
PaeR7I	CTCGAG	1 cut(s)	492
PfeI	GAWTC	1 cut(s)	176
PflMI	CCANNNNNTGG	1 cut(s)	691
PinAI	ACCGGT	1 cut(s)	628
PkrI	GCNGC	5 cut(s)	238, 530, 613, 710, 713
PmaCI	CACGTG	1 cut(s)	438
PmlI	CACGTG	1 cut(s)	438
Ppu21I	YACGTR	1 cut(s)	438
PpuMI	RGGWCCY	1 cut(s)	353
Psp5II	RGGWCCY	1 cut(s)	353
PspCI	CACGTG	1 cut(s)	438
PspN4I	GGNNCC	1 cut(s)	545
PspPI	GGNCC	2 cut(s)	353, 626
PspPPI	RGGWCCY	1 cut(s)	353
PstI	CTGCAG	1 cut(s)	713
PsuI	RGATCY	1 cut(s)	674
RsaI	GTAC	1 cut(s)	510
RsaNI	GTAC	1 cut(s)	509
RseI	CAYNNNNRTG	1 cut(s)	663
SatI	GCNGC	5 cut(s)	237, 529, 612, 709, 712
Sau3AI	GATC	2 cut(s)	567, 674
Sau96I	GGNCC	2 cut(s)	353, 626
SduI	GDGCHC	1 cut(s)	546
SfaNI	GCATC	2 cut(s)	127, 565
SfcI	CTRYAG	2 cut(s)	199, 709
Sfr274I	CTCGAG	1 cut(s)	492
SinI	GGWCC	2 cut(s)	353, 626
SlaI	CTCGAG	1 cut(s)	492
SmiMI	CAYNNNNRTG	1 cut(s)	663
SmlI	CTYRAG	1 cut(s)	492
SmoI	CTYRAG	1 cut(s)	492
SpeI	ACTAGT	1 cut(s)	644
Sse9I	AATT	5 cut(s)	168, 366, 468, 594, 653
SsiI	CCGC	2 cut(s)	529, 591
SspMI	CTAG	4 cut(s)	159, 525, 560, 645
StyI	CCWWGG	1 cut(s)	532
TaaI	ACNGT	3 cut(s)	43, 109, 728
TaiI	ACGT	2 cut(s)	105, 440
TaqI	TCGA	2 cut(s)	493, 722
TasI	AATT	5 cut(s)	168, 366, 468, 594, 653
TauI	GCSGC	1 cut(s)	531
TfiI	GAWTC	1 cut(s)	176
TseFI	GTSAC	2 cut(s)	103, 431
TseI	GCWGC	4 cut(s)	236, 611, 708, 711
Tsp45I	GTSAC	2 cut(s)	103, 431
TspDTI	ATGAA	1 cut(s)	32
TspGWI	ACGGA	1 cut(s)	419
Van91I	CCANNNNNTGG	1 cut(s)	691
VpaK11BI	GGWCC	2 cut(s)	353, 626
XceI	RCATGY	1 cut(s)	700
XhoI	CTCGAG	1 cut(s)	492
XspI	CTAG	4 cut(s)	159, 525, 560, 645

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.