Prupe.6G003800_v2.0.a1

Elongation factor

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
prunus_persica
Pp06
OG0009317
Physical Location & Seq
Forward (+)
407903 .. 412413
4511 bp
Loading structure...
UTR
Exon/CDS
Intron
Prupe.6G003800.2

Sequence Viewer

Length: 780 bp
ATGCAAGCGGTAGCAAAGCTGAGCAAGAACCTCACTCGGCCTCTCTTCTTCCTCGCTCCAAGAACCTTAACCACACTCACTGCTCCTTCTTCTTTATCGAACTTGCTTACCTCACTGGGCTGTGACACCAGCATCACCCACTGCACCAACACCTGTCTCACTGGAAGAACTCTGCTTCAATCTCCCTGGTCCGCCATCCAACACCGCGGAGCCGTTGTCCTGGGCTCCGATGTGAGAGCTGGAAATGTCATTGAGAGGAAAGATCGTCTTTACCAGGTGATAAAGGTAGAACATTCCCATGAAGGAAGAGGAAAAGCGCACATTAAGGTGGAGCTTCGTGATGTTGACTCTGGAAACAAGACATCCCAAAGGTTGTCGACGGATGAGGCAGTTGAAAGAGTATTTGTTGAGACAAAAAGCTACATTTACATGTGCACAGATCGTGATGGCATTGTATTATTGATTGACCCTGATACGTACGATCAGCTCGAAGTGCCTGAGGACTTATTTGGAAAGAAGGCTAAATACCTACAAGAGGAACTGAAAGTTAAAGTGGAGCTGTTTAACGGAATCCCTTTGTCCGCATCAGTTCCAAAACATGTGACATGCATTGTCAAGGAAGCACAACCTCCTGTGAAGGGGATTGCAGCAACACCTAAGGATAAAATAGCTGAGATGCAAAATGGCTTCACCATGAAAGTACCACCTCACATCATAGCTGGTGAAGCTGTGATAATTGACACTGAGGACGACTCCTATGTCAGAAGGGCCAAGGCATAG
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
No ontology terms assigned.
KEGG Pathways
Metabolic & Signaling
No pathways identified.
Pfam Domains
Protein Families
EFP EFP_N Elong-fact-P_C

Protein Analysis

260

Amino Acids

28.61

Weight (kDa)

8.21

Isoelectric Point (pI)

31.09

Instability Index
Protein Domains (Pfam)
No Pfam domains detected for this protein.
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
Loading...
Style Settings
Image
Tree File
Tip: Beautify your tree with professional tools

Download the Full Tree (.nwk) file, then upload it to any of the following tools to customize colors, fonts, annotations, clades, and branch support.

Publication-ready
iTOL Interactive Tree Of Life · Most popular EvolView Flexible annotations MEGA Desktop phylogenetics suite FigTree Desktop tree editor

Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AasI GACNNNNNNGTC 1 cut(s) 758
AccI GTMKAC 1 cut(s) 377
AccII CGCG 1 cut(s) 207
AciI CCGC 5 cut(s) 8, 192, 205, 207, 582
AfaI GTAC 2 cut(s) 479, 702
AfiI CCNNNNNNNGG 2 cut(s) 535, 638
AflIII ACRYGT 2 cut(s) 429, 598
AgsI TTSAA 2 cut(s) 179, 395
AjnI CCWGG 3 cut(s) 185, 219, 273
AluBI AGCT 9 cut(s) 19, 239, 334, 420, 487, 559, 671, 719, 728
AluI AGCT 9 cut(s) 19, 239, 334, 420, 487, 559, 671, 719, 728
Alw21I GWGCWC 1 cut(s) 437
Alw26I GTCTC 2 cut(s) 161, 404
Alw44I GTGCAC 1 cut(s) 433
AoxI GGCC 2 cut(s) 38, 768
ApaLI GTGCAC 1 cut(s) 433
ApeKI GCWGC 1 cut(s) 647
AspLEI GCGC 1 cut(s) 319
AspS9I GGNCC 2 cut(s) 189, 768
AsuHPI GGTGA 4 cut(s) 127, 289, 682, 734
AvaII GGWCC 1 cut(s) 189
AxyI CCTNAGG 2 cut(s) 498, 657
BaeGI GKGCMC 1 cut(s) 437
BanII GRGCYC 1 cut(s) 227
BarI GAAGNNNNNNTAC 2 cut(s) 509, 541
Bbv12I GWGCWC 1 cut(s) 437
BbvI GCAGC 1 cut(s) 659
BccI CCATC 2 cut(s) 203, 440
BceAI ACGGC 1 cut(s) 197
BciT130I CCWGG 3 cut(s) 187, 221, 275
BcoDI GTCTC 2 cut(s) 161, 404
BisI GCNGC 1 cut(s) 648
BlpI GCTNAGC 1 cut(s) 20
BlsI GCNGC 1 cut(s) 649
Bme1390I CCNGG 3 cut(s) 187, 221, 275
Bme18I GGWCC 1 cut(s) 189
BmgT120I GGNCC 2 cut(s) 189, 768
BmiI GGNNCC 2 cut(s) 211, 226
BmrFI CCNGG 3 cut(s) 187, 221, 275
BmrI ACTGGG 1 cut(s) 125
BmsI GCATC 3 cut(s) 141, 593, 666
BmuI ACTGGG 1 cut(s) 125
BplI GAGNNNNNCTC 2 cut(s) 737, 769
Bpu1102I GCTNAGC 1 cut(s) 20
BsaAI YACGTR 1 cut(s) 477
BsaJI CCNNGG 4 cut(s) 185, 205, 220, 771
BsaXI ACNNNNNCTCC 2 cut(s) 201, 231
Bsc4I CCNNNNNNNGG 2 cut(s) 535, 638
Bse1I ACTGG 2 cut(s) 120, 166
Bse21I CCTNAGG 2 cut(s) 498, 657
BseBI CCWGG 3 cut(s) 187, 221, 275
BseDI CCNNGG 4 cut(s) 185, 205, 220, 771
BseGI GGATG 3 cut(s) 195, 362, 388
BseLI CCNNNNNNNGG 2 cut(s) 535, 638
BseMII CTCAG 4 cut(s) 11, 489, 663, 735
BseNI ACTGG 2 cut(s) 120, 166
BseSI GKGCMC 1 cut(s) 437
BseXI GCAGC 1 cut(s) 659
BsgI GTGCAG 1 cut(s) 127
Bsh1236I CGCG 1 cut(s) 207
BshFI GGCC 2 cut(s) 40, 770
BsiHKAI GWGCWC 1 cut(s) 437
BsiWI CGTACG 1 cut(s) 477
BslI CCNNNNNNNGG 2 cut(s) 535, 638
BsmAI GTCTC 2 cut(s) 161, 404
BsnI GGCC 2 cut(s) 40, 770
Bsp1286I GDGCHC 2 cut(s) 227, 437
Bsp143I GATC 3 cut(s) 262, 439, 481
Bsp1720I GCTNAGC 1 cut(s) 20
BspACI CCGC 5 cut(s) 8, 192, 205, 207, 582
BspANI GGCC 2 cut(s) 40, 770
BspCNI CTCAG 4 cut(s) 12, 490, 664, 736
BspFNI CGCG 1 cut(s) 207
BspLI GGNNCC 2 cut(s) 211, 226
BsrI ACTGG 2 cut(s) 120, 166
BssECI CCNNGG 4 cut(s) 185, 205, 220, 771
BssMI GATC 3 cut(s) 262, 439, 481
BssT1I CCWWGG 1 cut(s) 771
Bst2UI CCWGG 3 cut(s) 187, 221, 275
Bst6I CTCTTC 2 cut(s) 50, 301
BstBAI YACGTR 1 cut(s) 477
BstC8I GCNNGC 1 cut(s) 6
BstDEI CTNAG 5 cut(s) 20, 498, 657, 672, 744
BstDSI CCRYGG 1 cut(s) 205
BstENI CCTNNNNNAGG 1 cut(s) 533
BstF5I GGATG 3 cut(s) 195, 362, 388
BstFNI CGCG 1 cut(s) 207
BstHHI GCGC 1 cut(s) 319
BstKTI GATC 3 cut(s) 265, 442, 484
BstMAI GTCTC 2 cut(s) 161, 404
BstMBI GATC 3 cut(s) 262, 439, 481
BstMWI GCNNNNNNNGC 2 cut(s) 493, 725
BstNI CCWGG 3 cut(s) 187, 221, 275
BstNSI RCATGY 3 cut(s) 433, 602, 609
BstSCI CCNGG 3 cut(s) 185, 219, 273
BstSLI GKGCMC 1 cut(s) 437
BstSNI TACGTA 1 cut(s) 477
BstUI CGCG 1 cut(s) 207
BstV1I GCAGC 1 cut(s) 659
Bsu36I CCTNAGG 2 cut(s) 498, 657
BsuRI GGCC 2 cut(s) 40, 770
BtgI CCRYGG 1 cut(s) 205
BtsCI GGATG 3 cut(s) 195, 362, 388
BtsI GCAGTG 2 cut(s) 78, 139
BtsIMutI CAGTG 5 cut(s) 78, 113, 139, 159, 741
Cac8I GCNNGC 1 cut(s) 6
CfoI GCGC 1 cut(s) 319
Cfr13I GGNCC 2 cut(s) 189, 768
Cfr42I CCGCGG 1 cut(s) 208
CsiI ACCWGGT 1 cut(s) 273
Csp6I GTAC 2 cut(s) 478, 701
CviAII CATG 5 cut(s) 299, 430, 599, 606, 694
CviQI GTAC 2 cut(s) 478, 701
DdeI CTNAG 5 cut(s) 20, 498, 657, 672, 744
DpnI GATC 3 cut(s) 264, 441, 483
DpnII GATC 3 cut(s) 262, 439, 481
DrdI GACNNNNNNGTC 1 cut(s) 758
DseDI GACNNNNNNGTC 1 cut(s) 758
Eam1104I CTCTTC 2 cut(s) 50, 301
EarI CTCTTC 2 cut(s) 50, 301
EciI GGCGGA 1 cut(s) 181
Eco105I TACGTA 1 cut(s) 477
Eco130I CCWWGG 1 cut(s) 771
Eco24I GRGCYC 1 cut(s) 227
Eco47I GGWCC 1 cut(s) 189
Eco81I CCTNAGG 2 cut(s) 498, 657
EcoNI CCTNNNNNAGG 1 cut(s) 533
EcoRII CCWGG 3 cut(s) 185, 219, 273
EcoT14I CCWWGG 1 cut(s) 771
EcoT22I ATGCAT 1 cut(s) 611
EcoT38I GRGCYC 1 cut(s) 227
ErhI CCWWGG 1 cut(s) 771
FaeI CATG 5 cut(s) 302, 433, 602, 609, 697
FaiI YATR 8 cut(s) 300, 431, 600, 607, 695, 716, 759, 778
FalI AAGNNNNNCTT 2 cut(s) 252, 284
FatI CATG 5 cut(s) 298, 429, 598, 605, 693
FblI GTMKAC 1 cut(s) 377
Fnu4HI GCNGC 1 cut(s) 648
FokI GGATG 3 cut(s) 182, 349, 395
FriOI GRGCYC 1 cut(s) 227
Fsp4HI GCNGC 1 cut(s) 648
GlaI GCGC 1 cut(s) 318
GluI GCNGC 1 cut(s) 648
HaeIII GGCC 2 cut(s) 40, 770
HhaI GCGC 1 cut(s) 319
Hin1II CATG 5 cut(s) 302, 433, 602, 609, 697
Hin6I GCGC 1 cut(s) 317
HinP1I GCGC 1 cut(s) 317
HincII GTYRAC 2 cut(s) 346, 378
HindII GTYRAC 2 cut(s) 346, 378
HinfI GANTC 3 cut(s) 347, 570, 752
HphI GGTGA 4 cut(s) 127, 289, 682, 734
Hpy166II GTNNAC 3 cut(s) 346, 378, 435
Hpy188I TCNGA 2 cut(s) 229, 764
Hpy188III TCNNGA 3 cut(s) 338, 351, 443
Hpy8I GTNNAC 3 cut(s) 346, 378, 435
Hpy99I CGWCG 1 cut(s) 382
HpyAV CCTTC 5 cut(s) 96, 296, 511, 631, 759
HpyCH4IV ACGT 1 cut(s) 476
HpyCH4V TGCA 6 cut(s) 4, 144, 435, 609, 647, 679
HpyF10VI GCNNNNNNNGC 2 cut(s) 493, 725
HpyF3I CTNAG 5 cut(s) 20, 498, 657, 672, 744
HpySE526I ACGT 1 cut(s) 476
Hsp92II CATG 5 cut(s) 302, 433, 602, 609, 697
HspAI GCGC 1 cut(s) 317
KspI CCGCGG 1 cut(s) 208
Kzo9I GATC 3 cut(s) 262, 439, 481
LmnI GCTCC 6 cut(s) 61, 88, 209, 230, 331, 556
Lsp1109I GCAGC 1 cut(s) 659
LweI GCATC 3 cut(s) 141, 593, 666
MabI ACCWGGT 1 cut(s) 273
MaeII ACGT 1 cut(s) 476
MaeIII GTNAC 2 cut(s) 122, 601
MalI GATC 3 cut(s) 264, 441, 483
MboI GATC 3 cut(s) 262, 439, 481
MboII GAAGA 5 cut(s) 37, 40, 81, 177, 318
MhlI GDGCHC 2 cut(s) 227, 437
MluCI AATT 1 cut(s) 735
MlyI GAGTC 2 cut(s) 341, 746
MmeI TCCRAC 1 cut(s) 223
Mph1103I ATGCAT 1 cut(s) 611
MseI TTAA 4 cut(s) 68, 324, 549, 564
MslI CAYNNNNRTG 3 cut(s) 297, 326, 428
MspA1I CMGCKG 1 cut(s) 207
MspR9I CCNGG 3 cut(s) 187, 221, 275
MvaI CCWGG 3 cut(s) 187, 221, 275
MvnI CGCG 1 cut(s) 207
MwoI GCNNNNNNNGC 2 cut(s) 493, 725
NdeII GATC 3 cut(s) 262, 439, 481
NlaIII CATG 5 cut(s) 302, 433, 602, 609, 697
NlaIV GGNNCC 2 cut(s) 211, 226
NmeAIII GCCGAG 1 cut(s) 16
NmuCI GTSAC 2 cut(s) 122, 601
NsiI ATGCAT 1 cut(s) 611
NspI RCATGY 3 cut(s) 433, 602, 609
PciI ACATGT 2 cut(s) 429, 598
PcsI WCGNNNNNNNCGW 1 cut(s) 486
PfeI GAWTC 1 cut(s) 570
Pfl23II CGTACG 1 cut(s) 477
PkrI GCNGC 1 cut(s) 649
PleI GAGTC 2 cut(s) 341, 746
PpsI GAGTC 2 cut(s) 341, 746
Ppu21I YACGTR 1 cut(s) 477
PscI ACATGT 2 cut(s) 429, 598
Psp6I CCWGG 3 cut(s) 185, 219, 273
PspGI CCWGG 3 cut(s) 185, 219, 273
PspLI CGTACG 1 cut(s) 477
PspN4I GGNNCC 2 cut(s) 211, 226
PspPI GGNCC 2 cut(s) 189, 768
RsaI GTAC 2 cut(s) 479, 702
RsaNI GTAC 2 cut(s) 478, 701
RseI CAYNNNNRTG 3 cut(s) 297, 326, 428
SacII CCGCGG 1 cut(s) 208
SalI GTCGAC 1 cut(s) 376
SaqAI TTAA 4 cut(s) 68, 324, 549, 564
SatI GCNGC 1 cut(s) 648
Sau3AI GATC 3 cut(s) 262, 439, 481
Sau96I GGNCC 2 cut(s) 189, 768
SchI GAGTC 2 cut(s) 341, 746
ScrFI CCNGG 3 cut(s) 187, 221, 275
SduI GDGCHC 2 cut(s) 227, 437
SexAI ACCWGGT 1 cut(s) 273
SfaNI GCATC 3 cut(s) 141, 593, 666
Sfr303I CCGCGG 1 cut(s) 208
SgrBI CCGCGG 1 cut(s) 208
SinI GGWCC 1 cut(s) 189
SmiMI CAYNNNNRTG 3 cut(s) 297, 326, 428
SnaBI TACGTA 1 cut(s) 477
Sse9I AATT 1 cut(s) 735
SsiI CCGC 5 cut(s) 8, 192, 205, 207, 582
StyD4I CCNGG 3 cut(s) 185, 219, 273
StyI CCWWGG 1 cut(s) 771
TaiI ACGT 1 cut(s) 479
TaqI TCGA 3 cut(s) 98, 377, 489
TasI AATT 1 cut(s) 735
TfiI GAWTC 1 cut(s) 570
Tru1I TTAA 4 cut(s) 68, 324, 549, 564
Tru9I TTAA 4 cut(s) 68, 324, 549, 564
TscAI CASTG 5 cut(s) 85, 120, 146, 166, 748
TseFI GTSAC 2 cut(s) 122, 601
TseI GCWGC 1 cut(s) 647
Tsp45I GTSAC 2 cut(s) 122, 601
TspDTI ATGAA 2 cut(s) 315, 710
TspGWI ACGGA 2 cut(s) 395, 582
TspRI CASTG 5 cut(s) 85, 120, 146, 166, 748
VneI GTGCAC 1 cut(s) 433
VpaK11BI GGWCC 1 cut(s) 189
XagI CCTNNNNNAGG 1 cut(s) 533
XceI RCATGY 3 cut(s) 433, 602, 609
XmiI GTMKAC 1 cut(s) 377
Zsp2I ATGCAT 1 cut(s) 611
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.