Basic Information

Type: gene

Biological Identity

Species

rosa_roxburghii

Chromosome

GWHEROQ00000001

Orthogroup ID

OG0009317

Physical Location & Seq

Genomic Coordinates Reverse (-)

18765179 .. 18784875

Gene Structure 19697 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

Rroxscaffold_1G00015100.1

Sequence Viewer

CDS Protein Promoter (2k)

Length: 876 bp

ATGGAGCATCTTTTGGCGGTGACTCGGTTTCCTCAAGACTTGAGTTGCAGAGAGAGACTAGAAAGAAGAGAAAAGAAGAAGAAGAAAATGCAAGCGGTGGCTGCGAAACTCACTCGCCCTCACTTCCTCACCATAACCTTAACCACCCTCACTCTCTCTTCTTCTTCTACTCTCTCCAATTTGCTATCCTTCCCCGGCCGTGACACCGCCACCATCACCCACGCGACCAACAAGTGTCTCGCCCGCCGAACATCTCTCCTCTCATCTCCTCCTTGGTCCGCCACTCAACACCGCAGCGCTAGAGTCCAAGGCACCGATGTGAGACCCGGCAATGTGATTCAAAAGAAAGATCGTAATTACCAGGTGATAAAGGTAGAGCATTCACATGAAGGAAGAGGAAAGGCCAACATTAAGCCGGAGCTTCGTGATAAAGGATCCGTGATAAAGACATCCCAAAGATTGGGGATAGAGGAGACAGTTGATAGAGTATTTGCCATGTCAAAAAGTTACATTTACATGTGCACAGACCGGGATGGCAAAGTATTATTGATGGATCCCGATACGCTTGATCAGCTCGAAGTGAATGAAGACGTATTTGAAAAGAACGCTAAATACCTACAAGAAGAAATGAAAGTTAGAGTGGAGCTGTTTAATGGGACCCCTTTTATCTGCATCGAGCCCAAAGTTCGGGCTTGTGCTCCGGTGGAAGCACAACCTCCTATTAAGAGGATTGCAGCAACACCTAGGGATAAAATAGCTACAATCCAAAATGGCTTCACTATAAAAGTACCAGCTCATATCATAGCTGGTGAGATCCTTGTCACCAGGAGTCGAGATGCGTATGTTGAACGTAAGACAATTCCAATGACCTTGTGA

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

No ontology terms assigned.

KEGG Pathways

Metabolic & Signaling

No pathways identified.

Pfam Domains

Protein Families

EFP EFP_N Elong-fact-P_C

Protein Analysis

291

Amino Acids

32.9

Weight (kDa)

9.76

Isoelectric Point (pI)

42.13

Instability Index

Protein Domains (Pfam)

Domain Name	Pfam ID	Position	E-value	Description
EFP_N	PF08207	105 - 143	3e-06	Elongation factor P (EF-P) KOW-like domain
EFP	PF01132	180 - 221	8.1e-11	Elongation factor P (EF-P) OB domain
Elong-fact-P_C	PF09285	235 - 284	6.2e-07	Elongation factor P, C-terminal

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

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Align Labels (Cladogram)

Image

Tree File

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Publication-ready

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Orthologous Genes (Group: OG0009317)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT4G26310 AT4G26310
fragaria_vesca	FvH4_3g45540 FvH4_3g45540 FvH4_3g45540
malus_domestica	MD03G1004200.v1.1 MD11G1003800.v1.1
prunus_persica	Prupe.6G003800_v2.0.a1 Prupe.6G003800_v2.0.a1
pyrus_communis	pycom11g00380
rosa_chinensis	RchiOBHm_Chr5g0083721
rosa_laevigata	RLG00000037048
rosa_multiflora	Rmu_sc0001287.1_g000003 Rmu_sc0002184.1_g000001
rosa_roxburghii	Rroxscaffold_1G00000860 Rroxscaffold_1G00015100
rosa_rugosa	Rorug05G0485300
rosa_samantha	Rh5AG538500 Rh5BG563800 Rh5CG585800 Rh5DG572100
rosa_wichuraiana	Rw5G050080

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AccB1I	GGYRCC	1 cut(s)	311
AccB7I	CCANNNNNTGG	1 cut(s)	460
AccII	CGCG	1 cut(s)	224
AciI	CCGC	6 cut(s)	17, 95, 207, 244, 279, 292
AclWI	GGATC	5 cut(s)	429, 442, 548, 561, 808
AcoI	YGGCCR	1 cut(s)	196
AfaI	GTAC	1 cut(s)	789
AfeI	AGCGCT	1 cut(s)	298
AfiI	CCNNNNNNNGG	2 cut(s)	460, 687
AflIII	ACRYGT	1 cut(s)	516
AgsI	TTSAA	3 cut(s)	341, 599, 848
AjnI	CCWGG	2 cut(s)	360, 824
AleI	CACNNNNGTG	1 cut(s)	317
AluBI	AGCT	6 cut(s)	421, 574, 646, 758, 794, 806
AluI	AGCT	6 cut(s)	421, 574, 646, 758, 794, 806
Alw21I	GWGCWC	2 cut(s)	524, 700
Alw26I	GTCTC	4 cut(s)	49, 242, 316, 467
Alw44I	GTGCAC	1 cut(s)	520
AlwI	GGATC	5 cut(s)	429, 442, 548, 561, 808
Aor51HI	AGCGCT	1 cut(s)	298
AoxI	GGCC	2 cut(s)	196, 402
ApaLI	GTGCAC	1 cut(s)	520
ApeKI	GCWGC	3 cut(s)	101, 294, 734
AspA2I	CCTAGG	1 cut(s)	743
AspLEI	GCGC	1 cut(s)	299
AspS9I	GGNCC	2 cut(s)	276, 657
AsuC2I	CCSGG	3 cut(s)	195, 327, 530
AsuHPI	GGTGA	6 cut(s)	31, 121, 208, 376, 814, 821
AvaII	GGWCC	2 cut(s)	276, 657
AvrII	CCTAGG	1 cut(s)	743
BaeGI	GKGCMC	1 cut(s)	524
BamHI	GGATCC	2 cut(s)	434, 553
BanI	GGYRCC	1 cut(s)	311
BanII	GRGCYC	1 cut(s)	681
BbsI	GAAGAC	1 cut(s)	594
Bbv12I	GWGCWC	2 cut(s)	524, 700
BbvI	GCAGC	3 cut(s)	88, 306, 746
BccI	CCATC	3 cut(s)	221, 527, 544
BceAI	ACGGC	1 cut(s)	183
BciT130I	CCWGG	2 cut(s)	362, 826
BclI	TGATCA	1 cut(s)	568
BcnI	CCSGG	3 cut(s)	195, 327, 530
BcoDI	GTCTC	4 cut(s)	49, 242, 316, 467
BfaI	CTAG	3 cut(s)	59, 300, 744
BfoI	RGCGCY	1 cut(s)	300
BisI	GCNGC	3 cut(s)	102, 295, 735
BlnI	CCTAGG	1 cut(s)	743
BlsI	GCNGC	3 cut(s)	103, 296, 736
Bme1390I	CCNGG	5 cut(s)	195, 327, 362, 530, 826
Bme18I	GGWCC	2 cut(s)	276, 657
BmgT120I	GGNCC	2 cut(s)	276, 657
BmiI	GGNNCC	5 cut(s)	313, 436, 555, 658, 659
BmrFI	CCNGG	5 cut(s)	195, 327, 362, 530, 826
BmsI	GCATC	3 cut(s)	16, 681, 826
BpiI	GAAGAC	1 cut(s)	594
BpuEI	CTTGAG	2 cut(s)	18, 61
BpuMI	CCSGG	3 cut(s)	195, 327, 530
BsaI	GGTCTC	1 cut(s)	316
BsaJI	CCNNGG	4 cut(s)	193, 272, 307, 743
BsaWI	WCCGGW	1 cut(s)	700
Bsc4I	CCNNNNNNNGG	2 cut(s)	460, 687
Bse3DI	GCAATG	1 cut(s)	337
BseBI	CCWGG	2 cut(s)	362, 826
BseDI	CCNNGG	4 cut(s)	193, 272, 307, 743
BseGI	GGATG	2 cut(s)	449, 538
BseLI	CCNNNNNNNGG	2 cut(s)	460, 687
BseMI	GCAATG	1 cut(s)	337
BseRI	GAGGAG	3 cut(s)	248, 258, 485
BseSI	GKGCMC	1 cut(s)	524
BseX3I	CGGCCG	1 cut(s)	196
BseXI	GCAGC	3 cut(s)	88, 306, 746
Bsh1236I	CGCG	1 cut(s)	224
Bsh1285I	CGRYCG	1 cut(s)	199
BshFI	GGCC	2 cut(s)	198, 404
BshNI	GGYRCC	1 cut(s)	311
BsiEI	CGRYCG	1 cut(s)	199
BsiHKAI	GWGCWC	2 cut(s)	524, 700
BsiSI	CCGG	5 cut(s)	195, 327, 416, 529, 701
BslFI	GGGAC	1 cut(s)	670
BslI	CCNNNNNNNGG	2 cut(s)	460, 687
BsmAI	GTCTC	4 cut(s)	49, 242, 316, 467
BsmFI	GGGAC	1 cut(s)	670
BsmI	GAATGC	1 cut(s)	379
BsnI	GGCC	2 cut(s)	198, 404
Bso31I	GGTCTC	1 cut(s)	316
Bsp1286I	GDGCHC	3 cut(s)	524, 681, 700
Bsp143I	GATC	5 cut(s)	349, 434, 553, 568, 813
BspACI	CCGC	6 cut(s)	17, 95, 207, 244, 279, 292
BspANI	GGCC	2 cut(s)	198, 404
BspFNI	CGCG	1 cut(s)	224
BspLI	GGNNCC	5 cut(s)	313, 436, 555, 658, 659
BspPI	GGATC	5 cut(s)	429, 442, 548, 561, 808
BspT107I	GGYRCC	1 cut(s)	311
BspTNI	GGTCTC	1 cut(s)	316
BsrDI	GCAATG	1 cut(s)	337
BssECI	CCNNGG	4 cut(s)	193, 272, 307, 743
BssMI	GATC	5 cut(s)	349, 434, 553, 568, 813
BssT1I	CCWWGG	3 cut(s)	272, 307, 743
Bst2UI	CCWGG	2 cut(s)	362, 826
Bst4CI	ACNGT	1 cut(s)	478
Bst6I	CTCTTC	3 cut(s)	61, 163, 388
BstC8I	GCNNGC	2 cut(s)	93, 244
BstF5I	GGATG	2 cut(s)	449, 538
BstFNI	CGCG	1 cut(s)	224
BstH2I	RGCGCY	1 cut(s)	300
BstHHI	GCGC	1 cut(s)	299
BstKTI	GATC	5 cut(s)	352, 437, 556, 571, 816
BstMAI	GTCTC	4 cut(s)	49, 242, 316, 467
BstMBI	GATC	5 cut(s)	349, 434, 553, 568, 813
BstMCI	CGRYCG	1 cut(s)	199
BstMWI	GCNNNNNNNGC	2 cut(s)	101, 571
BstNI	CCWGG	2 cut(s)	362, 826
BstNSI	RCATGY	1 cut(s)	520
BstSCI	CCNGG	5 cut(s)	193, 325, 360, 528, 824
BstSLI	GKGCMC	1 cut(s)	524
BstUI	CGCG	1 cut(s)	224
BstV1I	GCAGC	3 cut(s)	88, 306, 746
BstV2I	GAAGAC	1 cut(s)	594
BstX2I	RGATCY	3 cut(s)	434, 553, 813
BstYI	RGATCY	3 cut(s)	434, 553, 813
BstZI	CGGCCG	1 cut(s)	196
BsuRI	GGCC	2 cut(s)	198, 404
BtsCI	GGATG	2 cut(s)	449, 538
Cac8I	GCNNGC	2 cut(s)	93, 244
CfoI	GCGC	1 cut(s)	299
Cfr13I	GGNCC	2 cut(s)	276, 657
CsiI	ACCWGGT	1 cut(s)	360
Csp6I	GTAC	1 cut(s)	788
CviAII	CATG	3 cut(s)	386, 496, 517
CviQI	GTAC	1 cut(s)	788
DpnI	GATC	5 cut(s)	351, 436, 555, 570, 815
DpnII	GATC	5 cut(s)	349, 434, 553, 568, 813
EaeI	YGGCCR	1 cut(s)	196
EagI	CGGCCG	1 cut(s)	196
Eam1104I	CTCTTC	3 cut(s)	61, 163, 388
EarI	CTCTTC	3 cut(s)	61, 163, 388
EciI	GGCGGA	1 cut(s)	268
EclXI	CGGCCG	1 cut(s)	196
Eco130I	CCWWGG	3 cut(s)	272, 307, 743
Eco24I	GRGCYC	1 cut(s)	681
Eco31I	GGTCTC	1 cut(s)	316
Eco47I	GGWCC	2 cut(s)	276, 657
Eco47III	AGCGCT	1 cut(s)	298
Eco52I	CGGCCG	1 cut(s)	196
EcoO109I	RGGNCCY	1 cut(s)	657
EcoRII	CCWGG	2 cut(s)	360, 824
EcoT14I	CCWWGG	3 cut(s)	272, 307, 743
EcoT38I	GRGCYC	1 cut(s)	681
ErhI	CCWWGG	3 cut(s)	272, 307, 743
FaeI	CATG	3 cut(s)	389, 499, 520
FaiI	YATR	8 cut(s)	134, 387, 497, 518, 782, 798, 803, 843
FaqI	GGGAC	1 cut(s)	670
FatI	CATG	3 cut(s)	385, 495, 516
FauI	CCCGC	1 cut(s)	251
FbaI	TGATCA	1 cut(s)	568
Fnu4HI	GCNGC	3 cut(s)	102, 295, 735
FokI	GGATG	2 cut(s)	436, 545
FriOI	GRGCYC	1 cut(s)	681
Fsp4HI	GCNGC	3 cut(s)	102, 295, 735
FspBI	CTAG	3 cut(s)	59, 300, 744
GlaI	GCGC	1 cut(s)	298
GluI	GCNGC	3 cut(s)	102, 295, 735
HaeII	RGCGCY	1 cut(s)	300
HaeIII	GGCC	2 cut(s)	198, 404
HapII	CCGG	5 cut(s)	195, 327, 416, 529, 701
HhaI	GCGC	1 cut(s)	299
Hin1II	CATG	3 cut(s)	389, 499, 520
Hin6I	GCGC	1 cut(s)	297
HinP1I	GCGC	1 cut(s)	297
HinfI	GANTC	4 cut(s)	22, 303, 337, 829
HpaII	CCGG	5 cut(s)	195, 327, 416, 529, 701
HphI	GGTGA	6 cut(s)	31, 121, 208, 376, 814, 821
Hpy166II	GTNNAC	1 cut(s)	522
Hpy188III	TCNNGA	4 cut(s)	35, 425, 557, 833
Hpy8I	GTNNAC	1 cut(s)	522
HpyAV	CCTTC	2 cut(s)	199, 383
HpyCH4III	ACNGT	1 cut(s)	478
HpyCH4IV	ACGT	2 cut(s)	591, 850
HpyCH4V	TGCA	5 cut(s)	48, 91, 522, 672, 734
HpyF10VI	GCNNNNNNNGC	2 cut(s)	101, 571
HpySE526I	ACGT	2 cut(s)	591, 850
Hsp92II	CATG	3 cut(s)	389, 499, 520
HspAI	GCGC	1 cut(s)	297
KflI	GGGWCCC	1 cut(s)	657
Ksp22I	TGATCA	1 cut(s)	568
Kzo9I	GATC	5 cut(s)	349, 434, 553, 568, 813
LmnI	GCTCC	4 cut(s)	4, 418, 643, 703
Lsp1109I	GCAGC	3 cut(s)	88, 306, 746
LweI	GCATC	3 cut(s)	16, 681, 826
MabI	ACCWGGT	1 cut(s)	360
MaeI	CTAG	3 cut(s)	59, 300, 744
MaeII	ACGT	2 cut(s)	591, 850
MaeIII	GTNAC	4 cut(s)	19, 200, 506, 820
MalI	GATC	5 cut(s)	351, 436, 555, 570, 815
MboI	GATC	5 cut(s)	349, 434, 553, 568, 813
MflI	RGATCY	3 cut(s)	434, 553, 813
MhlI	GDGCHC	3 cut(s)	524, 681, 700
MluCI	AATT	3 cut(s)	178, 355, 858
MlyI	GAGTC	3 cut(s)	16, 312, 838
MseI	TTAA	4 cut(s)	140, 411, 651, 723
MslI	CAYNNNNRTG	3 cut(s)	317, 384, 515
MspI	CCGG	5 cut(s)	195, 327, 416, 529, 701
MspR9I	CCNGG	5 cut(s)	195, 327, 362, 530, 826
Mva1269I	GAATGC	1 cut(s)	379
MvaI	CCWGG	2 cut(s)	362, 826
MvnI	CGCG	1 cut(s)	224
MwoI	GCNNNNNNNGC	2 cut(s)	101, 571
NciI	CCSGG	3 cut(s)	195, 327, 530
NdeII	GATC	5 cut(s)	349, 434, 553, 568, 813
NlaIII	CATG	3 cut(s)	389, 499, 520
NlaIV	GGNNCC	5 cut(s)	313, 436, 555, 658, 659
NmuCI	GTSAC	3 cut(s)	19, 200, 820
NspI	RCATGY	1 cut(s)	520
OliI	CACNNNNGTG	1 cut(s)	317
PciI	ACATGT	1 cut(s)	516
PctI	GAATGC	1 cut(s)	379
PfeI	GAWTC	1 cut(s)	337
PflMI	CCANNNNNTGG	1 cut(s)	460
PkrI	GCNGC	3 cut(s)	103, 296, 736
PleI	GAGTC	3 cut(s)	16, 311, 837
PpsI	GAGTC	3 cut(s)	16, 311, 837
PpuMI	RGGWCCY	1 cut(s)	657
PscI	ACATGT	1 cut(s)	516
Psp5II	RGGWCCY	1 cut(s)	657
Psp6I	CCWGG	2 cut(s)	360, 824
PspGI	CCWGG	2 cut(s)	360, 824
PspN4I	GGNNCC	5 cut(s)	313, 436, 555, 658, 659
PspPI	GGNCC	2 cut(s)	276, 657
PspPPI	RGGWCCY	1 cut(s)	657
PsrI	GAACNNNNNNTAC	2 cut(s)	596, 628
PsuI	RGATCY	3 cut(s)	434, 553, 813
RsaI	GTAC	1 cut(s)	789
RsaNI	GTAC	1 cut(s)	788
RseI	CAYNNNNRTG	3 cut(s)	317, 384, 515
SaqAI	TTAA	4 cut(s)	140, 411, 651, 723
SatI	GCNGC	3 cut(s)	102, 295, 735
Sau3AI	GATC	5 cut(s)	349, 434, 553, 568, 813
Sau96I	GGNCC	2 cut(s)	276, 657
SchI	GAGTC	3 cut(s)	16, 312, 838
ScrFI	CCNGG	5 cut(s)	195, 327, 362, 530, 826
SduI	GDGCHC	3 cut(s)	524, 681, 700
SexAI	ACCWGGT	1 cut(s)	360
SfaNI	GCATC	3 cut(s)	16, 681, 826
SinI	GGWCC	2 cut(s)	276, 657
SmiMI	CAYNNNNRTG	3 cut(s)	317, 384, 515
SmlI	CTYRAG	2 cut(s)	33, 40
SmoI	CTYRAG	2 cut(s)	33, 40
Sse9I	AATT	3 cut(s)	178, 355, 858
SsiI	CCGC	6 cut(s)	17, 95, 207, 244, 279, 292
SspMI	CTAG	3 cut(s)	59, 300, 744
StyD4I	CCNGG	5 cut(s)	193, 325, 360, 528, 824
StyI	CCWWGG	3 cut(s)	272, 307, 743
TaaI	ACNGT	1 cut(s)	478
TaiI	ACGT	2 cut(s)	594, 853
TaqI	TCGA	3 cut(s)	576, 675, 832
TasI	AATT	3 cut(s)	178, 355, 858
TfiI	GAWTC	1 cut(s)	337
Tru1I	TTAA	4 cut(s)	140, 411, 651, 723
Tru9I	TTAA	4 cut(s)	140, 411, 651, 723
TseFI	GTSAC	3 cut(s)	19, 200, 820
TseI	GCWGC	3 cut(s)	101, 294, 734
Tsp45I	GTSAC	3 cut(s)	19, 200, 820
TspDTI	ATGAA	3 cut(s)	402, 600, 644
TspGWI	ACGGA	1 cut(s)	427
Van91I	CCANNNNNTGG	1 cut(s)	460
VneI	GTGCAC	1 cut(s)	520
VpaK11BI	GGWCC	2 cut(s)	276, 657
XceI	RCATGY	1 cut(s)	520
XmaJI	CCTAGG	1 cut(s)	743
XspI	CTAG	3 cut(s)	59, 300, 744

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.