Basic Information

Type: gene

Biological Identity

Species

fragaria_vesca

Chromosome

Fvb3

Orthogroup ID

OG0009317

Physical Location & Seq

Genomic Coordinates Reverse (-)

37748902 .. 37752975

Gene Structure 4074 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

FvH4_3g45540.t1

Sequence Viewer

CDS Protein Promoter (2k)

Length: 756 bp

ATGCAAGCAGTGGCAACGAAGCTCACTCGCCGTCGCTTCCTTACGAGAGCCTTAAGCGCCGTCGCTCTCTCCTCTTCCTCTTCTCTTTCCAAATTGCTATCCTCCCCTGCCGGTGACTCCACAATCAGCCACGCCACCAACACGTGTCTCACTCCTCCTCCTTGGTCCGCCACTCAGCACCGCGGCGCCAGAGTCCAAGGCGCTGACGTGAGGCCTGGCAATGTGATTCAGAAGAAAGATCGTATTTACCAGGTAATCAAGGTAGAGCATTCACATGAAGGAAGAGGAAAGGCCAACATTAAGCTGGAGCTTCGTGATGTCAACTCTGGGAACAAGACATCCCAAAGATTGGGGACTGAGGAAACAGTTGATAGAGTATTTGTTACGTCAAAAAGTTACGTTTACATGTGCACAGATCGGGATGGAAAAGTATTATTGATGGATCCTGAGACACTTGATCAGCTCGAAGTGAATGAAGACGTATTTGGAAAGAATGCTAAATACCTACAAGAAGAAATGAAAGTTAAAGTGGAACTGTTTAATGGGACCCCTTTATCTGCATCAGTTCCAAAACATGTAACCTGCACTATCAAGGAAGCACAACCTCCTATAAAGGGGATTGCAGCAACACCTAAGGATAAAATAGCTACAACCCAAAATGGCTTCATTGTGAAAGTACCAGCTCATATCGTAGCTGGTGACTCTGTAGTTATTGATACCGAGGATGACTCTTATGTTAGAAGGGCCAAGGCATGA

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

No ontology terms assigned.

KEGG Pathways

Metabolic & Signaling

No pathways identified.

Pfam Domains

Protein Families

EFP EFP_N Elong-fact-P_C

Protein Analysis

252

Amino Acids

27.44

Weight (kDa)

9.36

Isoelectric Point (pI)

33.58

Instability Index

Protein Domains (Pfam)

Domain Name	Pfam ID	Position	E-value	Description
EFP_N	PF08207	68 - 123	1.5e-12	Elongation factor P (EF-P) KOW-like domain
EFP	PF01132	143 - 185	1.3e-12	Elongation factor P (EF-P) OB domain
Elong-fact-P_C	PF09285	193 - 248	5.5e-15	Elongation factor P, C-terminal

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

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Align Labels (Cladogram)

Image

Tree File

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Publication-ready

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Orthologous Genes (Group: OG0009317)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT4G26310 AT4G26310
fragaria_vesca	FvH4_3g45540 FvH4_3g45540 FvH4_3g45540
malus_domestica	MD03G1004200.v1.1 MD11G1003800.v1.1
prunus_persica	Prupe.6G003800_v2.0.a1 Prupe.6G003800_v2.0.a1
pyrus_communis	pycom11g00380
rosa_chinensis	RchiOBHm_Chr5g0083721
rosa_laevigata	RLG00000037048
rosa_multiflora	Rmu_sc0001287.1_g000003 Rmu_sc0002184.1_g000001
rosa_roxburghii	Rroxscaffold_1G00000860 Rroxscaffold_1G00015100
rosa_rugosa	Rorug05G0485300
rosa_samantha	Rh5AG538500 Rh5BG563800 Rh5CG585800 Rh5DG572100
rosa_wichuraiana	Rw5G050080

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
Acc36I	ACCTGC	1 cut(s)	590
AccB1I	GGYRCC	1 cut(s)	185
AccB7I	CCANNNNNTGG	1 cut(s)	349
AccII	CGCG	1 cut(s)	183
AciI	CCGC	3 cut(s)	168, 181, 183
AclWI	GGATC	2 cut(s)	437, 450
AcvI	CACGTG	1 cut(s)	144
AcyI	GRCGYC	1 cut(s)	186
AfaI	GTAC	1 cut(s)	678
AfiI	CCNNNNNNNGG	2 cut(s)	349, 614
AflII	CTTAAG	1 cut(s)	52
AflIII	ACRYGT	4 cut(s)	141, 143, 405, 574
AjiI	CACGTC	1 cut(s)	208
AjnI	CCWGG	2 cut(s)	214, 249
AjuI	GAANNNNNNNTTGG	2 cut(s)	468, 500
AloI	GAACNNNNNNTCC	2 cut(s)	323, 355
AluBI	AGCT	7 cut(s)	22, 304, 310, 463, 647, 683, 695
AluI	AGCT	7 cut(s)	22, 304, 310, 463, 647, 683, 695
Alw21I	GWGCWC	1 cut(s)	413
Alw26I	GTCTC	2 cut(s)	152, 443
Alw44I	GTGCAC	1 cut(s)	409
AlwI	GGATC	2 cut(s)	437, 450
AoxI	GGCC	3 cut(s)	212, 291, 744
ApaLI	GTGCAC	1 cut(s)	409
ApeKI	GCWGC	1 cut(s)	623
AspLEI	GCGC	3 cut(s)	59, 188, 203
AspS9I	GGNCC	3 cut(s)	165, 546, 744
AsuHPI	GGTGA	2 cut(s)	125, 710
AvaII	GGWCC	2 cut(s)	165, 546
AxyI	CCTNAGG	1 cut(s)	633
BaeGI	GKGCMC	1 cut(s)	413
BamHI	GGATCC	1 cut(s)	442
BanI	GGYRCC	1 cut(s)	185
BbrPI	CACGTG	1 cut(s)	144
BbsI	GAAGAC	1 cut(s)	483
Bbv12I	GWGCWC	1 cut(s)	413
BbvI	GCAGC	1 cut(s)	635
BccI	CCATC	2 cut(s)	416, 433
BceAI	ACGGC	2 cut(s)	15, 44
BciT130I	CCWGG	2 cut(s)	216, 251
BclI	TGATCA	1 cut(s)	457
BcoDI	GTCTC	2 cut(s)	152, 443
BfmI	CTRYAG	1 cut(s)	705
BfoI	RGCGCY	3 cut(s)	60, 189, 204
BfrI	CTTAAG	1 cut(s)	52
BfuAI	ACCTGC	1 cut(s)	590
BisI	GCNGC	2 cut(s)	184, 624
BlsI	GCNGC	2 cut(s)	185, 625
Bme1390I	CCNGG	2 cut(s)	216, 251
Bme18I	GGWCC	2 cut(s)	165, 546
BmgBI	CACGTC	1 cut(s)	208
BmgT120I	GGNCC	3 cut(s)	165, 546, 744
BmiI	GGNNCC	4 cut(s)	187, 444, 547, 548
BmrFI	CCNGG	2 cut(s)	216, 251
BmsI	GCATC	1 cut(s)	569
BpiI	GAAGAC	1 cut(s)	483
BplI	GAGNNNNNCTC	2 cut(s)	713, 745
BpmI	CTGGAG	1 cut(s)	326
BsaAI	YACGTR	1 cut(s)	144
BsaHI	GRCGYC	1 cut(s)	186
BsaJI	CCNNGG	5 cut(s)	161, 181, 196, 720, 747
BsaXI	ACNNNNNCTCC	2 cut(s)	142, 172
Bsc4I	CCNNNNNNNGG	2 cut(s)	349, 614
Bse118I	RCCGGY	1 cut(s)	110
Bse21I	CCTNAGG	1 cut(s)	633
Bse3DI	GCAATG	1 cut(s)	226
BseBI	CCWGG	2 cut(s)	216, 251
BseDI	CCNNGG	5 cut(s)	161, 181, 196, 720, 747
BseGI	GGATG	3 cut(s)	338, 427, 730
BseLI	CCNNNNNNNGG	2 cut(s)	349, 614
BseMI	GCAATG	1 cut(s)	226
BseMII	CTCAG	3 cut(s)	188, 348, 438
BseRI	GAGGAG	3 cut(s)	61, 144, 147
BseSI	GKGCMC	1 cut(s)	413
BseXI	GCAGC	1 cut(s)	635
BsgI	GTGCAG	1 cut(s)	568
Bsh1236I	CGCG	1 cut(s)	183
BshFI	GGCC	3 cut(s)	214, 293, 746
BshNI	GGYRCC	1 cut(s)	185
BsiHKAI	GWGCWC	1 cut(s)	413
BsiSI	CCGG	1 cut(s)	111
BslFI	GGGAC	2 cut(s)	367, 559
BslI	CCNNNNNNNGG	2 cut(s)	349, 614
BsmAI	GTCTC	2 cut(s)	152, 443
BsmFI	GGGAC	2 cut(s)	367, 559
BsmI	GAATGC	2 cut(s)	268, 499
BsnI	GGCC	3 cut(s)	214, 293, 746
Bsp1286I	GDGCHC	1 cut(s)	413
Bsp143I	GATC	4 cut(s)	238, 415, 442, 457
BspACI	CCGC	3 cut(s)	168, 181, 183
BspANI	GGCC	3 cut(s)	214, 293, 746
BspCNI	CTCAG	3 cut(s)	187, 349, 439
BspFNI	CGCG	1 cut(s)	183
BspLI	GGNNCC	4 cut(s)	187, 444, 547, 548
BspMI	ACCTGC	1 cut(s)	590
BspPI	GGATC	2 cut(s)	437, 450
BspT107I	GGYRCC	1 cut(s)	185
BspTI	CTTAAG	1 cut(s)	52
BsrDI	GCAATG	1 cut(s)	226
BsrFI	RCCGGY	1 cut(s)	110
BssAI	RCCGGY	1 cut(s)	110
BssECI	CCNNGG	5 cut(s)	161, 181, 196, 720, 747
BssMI	GATC	4 cut(s)	238, 415, 442, 457
BssNI	GRCGYC	1 cut(s)	186
BssT1I	CCWWGG	3 cut(s)	161, 196, 747
Bst2UI	CCWGG	2 cut(s)	216, 251
Bst4CI	ACNGT	2 cut(s)	367, 537
Bst6I	CTCTTC	3 cut(s)	79, 85, 277
BstACI	GRCGYC	1 cut(s)	186
BstAFI	CTTAAG	1 cut(s)	52
BstBAI	YACGTR	1 cut(s)	144
BstC8I	GCNNGC	1 cut(s)	6
BstDEI	CTNAG	4 cut(s)	174, 357, 447, 633
BstDSI	CCRYGG	1 cut(s)	181
BstF5I	GGATG	3 cut(s)	338, 427, 730
BstFNI	CGCG	1 cut(s)	183
BstH2I	RGCGCY	3 cut(s)	60, 189, 204
BstHHI	GCGC	3 cut(s)	59, 188, 203
BstKTI	GATC	4 cut(s)	241, 418, 445, 460
BstMAI	GTCTC	2 cut(s)	152, 443
BstMBI	GATC	4 cut(s)	238, 415, 442, 457
BstMWI	GCNNNNNNNGC	1 cut(s)	56
BstNI	CCWGG	2 cut(s)	216, 251
BstNSI	RCATGY	2 cut(s)	409, 578
BstSCI	CCNGG	2 cut(s)	214, 249
BstSFI	CTRYAG	1 cut(s)	705
BstSLI	GKGCMC	1 cut(s)	413
BstUI	CGCG	1 cut(s)	183
BstV1I	GCAGC	1 cut(s)	635
BstV2I	GAAGAC	1 cut(s)	483
BstX2I	RGATCY	1 cut(s)	442
BstYI	RGATCY	1 cut(s)	442
Bsu36I	CCTNAGG	1 cut(s)	633
BsuRI	GGCC	3 cut(s)	214, 293, 746
BtgI	CCRYGG	1 cut(s)	181
BtrI	CACGTC	1 cut(s)	208
BtsCI	GGATG	3 cut(s)	338, 427, 730
BtsI	GCAGTG	1 cut(s)	15
BtsIMutI	CAGTG	1 cut(s)	15
BveI	ACCTGC	1 cut(s)	590
Cac8I	GCNNGC	1 cut(s)	6
CfoI	GCGC	3 cut(s)	59, 188, 203
Cfr10I	RCCGGY	1 cut(s)	110
Cfr13I	GGNCC	3 cut(s)	165, 546, 744
Cfr42I	CCGCGG	1 cut(s)	184
CsiI	ACCWGGT	1 cut(s)	249
Csp6I	GTAC	1 cut(s)	677
CviAII	CATG	4 cut(s)	275, 406, 575, 753
CviQI	GTAC	1 cut(s)	677
DdeI	CTNAG	4 cut(s)	174, 357, 447, 633
DinI	GGCGCC	1 cut(s)	187
DpnI	GATC	4 cut(s)	240, 417, 444, 459
DpnII	GATC	4 cut(s)	238, 415, 442, 457
Eam1104I	CTCTTC	3 cut(s)	79, 85, 277
EarI	CTCTTC	3 cut(s)	79, 85, 277
EciI	GGCGGA	1 cut(s)	157
Eco130I	CCWWGG	3 cut(s)	161, 196, 747
Eco147I	AGGCCT	1 cut(s)	214
Eco47I	GGWCC	2 cut(s)	165, 546
Eco72I	CACGTG	1 cut(s)	144
Eco81I	CCTNAGG	1 cut(s)	633
EcoO109I	RGGNCCY	1 cut(s)	546
EcoRII	CCWGG	2 cut(s)	214, 249
EcoT14I	CCWWGG	3 cut(s)	161, 196, 747
EgeI	GGCGCC	1 cut(s)	187
EheI	GGCGCC	1 cut(s)	187
ErhI	CCWWGG	3 cut(s)	161, 196, 747
FaeI	CATG	4 cut(s)	278, 409, 578, 756
FaiI	YATR	7 cut(s)	276, 407, 576, 611, 687, 735, 754
FaqI	GGGAC	2 cut(s)	367, 559
FatI	CATG	4 cut(s)	274, 405, 574, 752
FbaI	TGATCA	1 cut(s)	457
Fnu4HI	GCNGC	2 cut(s)	184, 624
FokI	GGATG	3 cut(s)	325, 434, 737
Fsp4HI	GCNGC	2 cut(s)	184, 624
GlaI	GCGC	3 cut(s)	58, 187, 202
GluI	GCNGC	2 cut(s)	184, 624
GsuI	CTGGAG	1 cut(s)	326
HaeII	RGCGCY	3 cut(s)	60, 189, 204
HaeIII	GGCC	3 cut(s)	214, 293, 746
HapII	CCGG	1 cut(s)	111
HhaI	GCGC	3 cut(s)	59, 188, 203
Hin1I	GRCGYC	1 cut(s)	186
Hin1II	CATG	4 cut(s)	278, 409, 578, 756
Hin6I	GCGC	3 cut(s)	57, 186, 201
HinP1I	GCGC	3 cut(s)	57, 186, 201
HincII	GTYRAC	1 cut(s)	322
HindII	GTYRAC	1 cut(s)	322
HinfI	GANTC	5 cut(s)	116, 192, 226, 701, 728
HpaII	CCGG	1 cut(s)	111
HphI	GGTGA	2 cut(s)	125, 710
Hpy166II	GTNNAC	3 cut(s)	322, 403, 411
Hpy188I	TCNGA	1 cut(s)	231
Hpy188III	TCNNGA	3 cut(s)	314, 419, 446
Hpy8I	GTNNAC	3 cut(s)	322, 403, 411
Hpy99I	CGWCG	2 cut(s)	36, 65
HpyAV	CCTTC	2 cut(s)	272, 735
HpyCH4III	ACNGT	2 cut(s)	367, 537
HpyCH4IV	ACGT	5 cut(s)	143, 207, 386, 399, 480
HpyCH4V	TGCA	5 cut(s)	4, 411, 560, 585, 623
HpyF10VI	GCNNNNNNNGC	1 cut(s)	56
HpyF3I	CTNAG	4 cut(s)	174, 357, 447, 633
HpySE526I	ACGT	5 cut(s)	143, 207, 386, 399, 480
Hsp92I	GRCGYC	1 cut(s)	186
Hsp92II	CATG	4 cut(s)	278, 409, 578, 756
HspAI	GCGC	3 cut(s)	57, 186, 201
KasI	GGCGCC	1 cut(s)	185
KflI	GGGWCCC	1 cut(s)	546
Ksp22I	TGATCA	1 cut(s)	457
KspI	CCGCGG	1 cut(s)	184
Kzo9I	GATC	4 cut(s)	238, 415, 442, 457
LmnI	GCTCC	1 cut(s)	307
Lsp1109I	GCAGC	1 cut(s)	635
LweI	GCATC	1 cut(s)	569
MabI	ACCWGGT	1 cut(s)	249
MaeII	ACGT	5 cut(s)	143, 207, 386, 399, 480
MaeIII	GTNAC	5 cut(s)	113, 382, 395, 577, 698
MalI	GATC	4 cut(s)	240, 417, 444, 459
MboI	GATC	4 cut(s)	238, 415, 442, 457
MboII	GAAGA	6 cut(s)	66, 72, 244, 294, 488, 524
MflI	RGATCY	1 cut(s)	442
MhlI	GDGCHC	1 cut(s)	413
MluCI	AATT	1 cut(s)	92
Mly113I	GGCGCC	1 cut(s)	186
MlyI	GAGTC	4 cut(s)	110, 201, 695, 722
MseI	TTAA	4 cut(s)	53, 300, 525, 540
MslI	CAYNNNNRTG	1 cut(s)	273
MspA1I	CMGCKG	1 cut(s)	183
MspCI	CTTAAG	1 cut(s)	52
MspI	CCGG	1 cut(s)	111
MspR9I	CCNGG	2 cut(s)	216, 251
Mva1269I	GAATGC	2 cut(s)	268, 499
MvaI	CCWGG	2 cut(s)	216, 251
MvnI	CGCG	1 cut(s)	183
MwoI	GCNNNNNNNGC	1 cut(s)	56
NarI	GGCGCC	1 cut(s)	186
NdeII	GATC	4 cut(s)	238, 415, 442, 457
NlaIII	CATG	4 cut(s)	278, 409, 578, 756
NlaIV	GGNNCC	4 cut(s)	187, 444, 547, 548
NmuCI	GTSAC	2 cut(s)	113, 698
NspI	RCATGY	2 cut(s)	409, 578
PceI	AGGCCT	1 cut(s)	214
PciI	ACATGT	2 cut(s)	405, 574
PctI	GAATGC	2 cut(s)	268, 499
PfeI	GAWTC	1 cut(s)	226
PflMI	CCANNNNNTGG	1 cut(s)	349
PkrI	GCNGC	2 cut(s)	185, 625
PleI	GAGTC	4 cut(s)	110, 200, 695, 722
PluTI	GGCGCC	1 cut(s)	189
PmaCI	CACGTG	1 cut(s)	144
PmlI	CACGTG	1 cut(s)	144
PpsI	GAGTC	4 cut(s)	110, 200, 695, 722
Ppu21I	YACGTR	1 cut(s)	144
PpuMI	RGGWCCY	1 cut(s)	546
PscI	ACATGT	2 cut(s)	405, 574
Psp5II	RGGWCCY	1 cut(s)	546
Psp6I	CCWGG	2 cut(s)	214, 249
PspCI	CACGTG	1 cut(s)	144
PspGI	CCWGG	2 cut(s)	214, 249
PspN4I	GGNNCC	4 cut(s)	187, 444, 547, 548
PspPI	GGNCC	3 cut(s)	165, 546, 744
PspPPI	RGGWCCY	1 cut(s)	546
PsuI	RGATCY	1 cut(s)	442
RsaI	GTAC	1 cut(s)	678
RsaNI	GTAC	1 cut(s)	677
RseI	CAYNNNNRTG	1 cut(s)	273
SacII	CCGCGG	1 cut(s)	184
SaqAI	TTAA	4 cut(s)	53, 300, 525, 540
SatI	GCNGC	2 cut(s)	184, 624
Sau3AI	GATC	4 cut(s)	238, 415, 442, 457
Sau96I	GGNCC	3 cut(s)	165, 546, 744
SchI	GAGTC	4 cut(s)	110, 201, 695, 722
ScrFI	CCNGG	2 cut(s)	216, 251
SduI	GDGCHC	1 cut(s)	413
SexAI	ACCWGGT	1 cut(s)	249
SfaNI	GCATC	1 cut(s)	569
SfcI	CTRYAG	1 cut(s)	705
SfoI	GGCGCC	1 cut(s)	187
Sfr303I	CCGCGG	1 cut(s)	184
SgrBI	CCGCGG	1 cut(s)	184
SinI	GGWCC	2 cut(s)	165, 546
SmiMI	CAYNNNNRTG	1 cut(s)	273
SmlI	CTYRAG	1 cut(s)	52
SmoI	CTYRAG	1 cut(s)	52
Sse9I	AATT	1 cut(s)	92
SseBI	AGGCCT	1 cut(s)	214
SsiI	CCGC	3 cut(s)	168, 181, 183
SspDI	GGCGCC	1 cut(s)	185
StuI	AGGCCT	1 cut(s)	214
StyD4I	CCNGG	2 cut(s)	214, 249
StyI	CCWWGG	3 cut(s)	161, 196, 747
TaaI	ACNGT	2 cut(s)	367, 537
TaiI	ACGT	5 cut(s)	146, 210, 389, 402, 483
TaqI	TCGA	1 cut(s)	465
TasI	AATT	1 cut(s)	92
TauI	GCSGC	1 cut(s)	186
TfiI	GAWTC	1 cut(s)	226
Tru1I	TTAA	4 cut(s)	53, 300, 525, 540
Tru9I	TTAA	4 cut(s)	53, 300, 525, 540
TscAI	CASTG	1 cut(s)	15
TseFI	GTSAC	2 cut(s)	113, 698
TseI	GCWGC	1 cut(s)	623
Tsp45I	GTSAC	2 cut(s)	113, 698
TspDTI	ATGAA	4 cut(s)	291, 489, 533, 655
TspRI	CASTG	1 cut(s)	15
Van91I	CCANNNNNTGG	1 cut(s)	349
Vha464I	CTTAAG	1 cut(s)	52
VneI	GTGCAC	1 cut(s)	409
VpaK11BI	GGWCC	2 cut(s)	165, 546
XceI	RCATGY	2 cut(s)	409, 578
XcmI	CCANNNNNNNNNTGG	1 cut(s)	301

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.