Basic Information

Type: gene

Biological Identity

Species

rosa_multiflora

Chromosome

Rmu_sc0001287.1

Orthogroup ID

OG0009317

Physical Location & Seq

Genomic Coordinates Reverse (-)

12426 .. 16227

Gene Structure 3802 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

Rmu_sc0001287.1_g000003.1.cds

Sequence Viewer

CDS Protein Promoter (2k)

Length: 783 bp

atgcaagcggtggctgccaaactcactcgccctcacttcctcaccagaaccttaaccaccctcactctctcttcttcttcttctactctctccaatttgctatcctcccccggccgtgacgccgccaccatcacccacgcgaccaacaagtgtcccgccggccgaacatctctcctctcgtctcctccttggtccgccactcaacaccgcggcgccagagtccaaggcgccgatgtgagacctggcaatgtgattcaaaagaaagatcgtatttaccaggtgataaaggtagagcattcacatgaaggaagaggaaaggccaacattaagctggagcttcgtgatgtggactctgggaataagacatcccaaagattggggacagaggagacagttgatagagtatttgtcatgtcaaaaagttacatttacatgtgcacggaccgggatggcaaagtattattgatggatcctgatacgcttgatcagcttgaagtgaatgaagacgtatttggaaagaatgctaaatacctacaagaagaaatgaaagttagagtggagctgtttaacgggacccctttatctgcatcagttccaaaacatgtgacctgcactgtcaaggaagcacagcctcctataaaggggattgcagcaacacctaaggataaaatagctacaatccaaaatggcttcactataaaagtaccagctcatatcatagctggtgagtctgtggttattgacaccgaggatgactcttatgttagaagggccaaggcataa

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

No ontology terms assigned.

KEGG Pathways

Metabolic & Signaling

No pathways identified.

Pfam Domains

Protein Families

EFP EFP_N Elong-fact-P_C

Protein Analysis

260

Amino Acids

28.47

Weight (kDa)

9.28

Isoelectric Point (pI)

33.24

Instability Index

Protein Domains (Pfam)

No Pfam domains detected for this protein.

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

Style Settings

Font Size (px)

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Align Labels (Cladogram)

Image

Tree File

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Publication-ready

iTOL Interactive Tree Of Life · Most popular EvolView Flexible annotations MEGA Desktop phylogenetics suite FigTree Desktop tree editor

Orthologous Genes (Group: OG0009317)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT4G26310 AT4G26310
fragaria_vesca	FvH4_3g45540 FvH4_3g45540 FvH4_3g45540
malus_domestica	MD03G1004200.v1.1 MD11G1003800.v1.1
prunus_persica	Prupe.6G003800_v2.0.a1 Prupe.6G003800_v2.0.a1
pyrus_communis	pycom11g00380
rosa_chinensis	RchiOBHm_Chr5g0083721
rosa_laevigata	RLG00000037048
rosa_multiflora	Rmu_sc0001287.1_g000003 Rmu_sc0002184.1_g000001
rosa_roxburghii	Rroxscaffold_1G00000860 Rroxscaffold_1G00015100
rosa_rugosa	Rorug05G0485300
rosa_samantha	Rh5AG538500 Rh5BG563800 Rh5CG585800 Rh5DG572100
rosa_wichuraiana	Rw5G050080

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
Acc36I	ACCTGC	1 cut(s)	617
AccB1I	GGYRCC	2 cut(s)	212, 227
AccB7I	CCANNNNNTGG	1 cut(s)	376
AccII	CGCG	2 cut(s)	140, 210
AciI	CCGC	6 cut(s)	8, 123, 156, 195, 208, 210
AclWI	GGATC	2 cut(s)	464, 477
AcoI	YGGCCR	2 cut(s)	112, 160
AcyI	GRCGYC	3 cut(s)	120, 213, 228
AfaI	GTAC	1 cut(s)	705
AfiI	CCNNNNNNNGG	2 cut(s)	376, 641
AflIII	ACRYGT	2 cut(s)	432, 601
AgsI	TTSAA	2 cut(s)	257, 494
AjnI	CCWGG	2 cut(s)	241, 276
AjuI	GAANNNNNNNTTGG	2 cut(s)	495, 527
AluBI	AGCT	7 cut(s)	331, 337, 490, 562, 674, 710, 722
AluI	AGCT	7 cut(s)	331, 337, 490, 562, 674, 710, 722
Alw21I	GWGCWC	1 cut(s)	440
Alw26I	GTCTC	3 cut(s)	186, 232, 383
Alw44I	GTGCAC	1 cut(s)	436
AlwI	GGATC	2 cut(s)	464, 477
AoxI	GGCC	4 cut(s)	112, 160, 318, 771
ApaLI	GTGCAC	1 cut(s)	436
ApeKI	GCWGC	2 cut(s)	14, 650
AspLEI	GCGC	2 cut(s)	215, 230
AspS9I	GGNCC	4 cut(s)	192, 442, 573, 771
AsuC2I	CCSGG	2 cut(s)	111, 446
AsuHPI	GGTGA	4 cut(s)	34, 124, 292, 737
AvaII	GGWCC	3 cut(s)	192, 442, 573
AxyI	CCTNAGG	1 cut(s)	660
BaeGI	GKGCMC	1 cut(s)	440
BamHI	GGATCC	1 cut(s)	469
BanI	GGYRCC	2 cut(s)	212, 227
BbsI	GAAGAC	1 cut(s)	510
Bbv12I	GWGCWC	1 cut(s)	440
BbvI	GCAGC	1 cut(s)	662
BccI	CCATC	3 cut(s)	137, 443, 460
BceAI	ACGGC	1 cut(s)	99
BciT130I	CCWGG	2 cut(s)	243, 278
BclI	TGATCA	1 cut(s)	484
BcnI	CCSGG	2 cut(s)	111, 446
BcoDI	GTCTC	3 cut(s)	186, 232, 383
BfoI	RGCGCY	2 cut(s)	216, 231
BfuAI	ACCTGC	1 cut(s)	617
BisI	GCNGC	4 cut(s)	15, 123, 211, 651
BlsI	GCNGC	4 cut(s)	16, 124, 212, 652
Bme1390I	CCNGG	4 cut(s)	111, 243, 278, 446
Bme18I	GGWCC	3 cut(s)	192, 442, 573
BmgT120I	GGNCC	4 cut(s)	192, 442, 573, 771
BmiI	GGNNCC	5 cut(s)	214, 229, 471, 574, 575
BmrFI	CCNGG	4 cut(s)	111, 243, 278, 446
BmsI	GCATC	1 cut(s)	596
BpiI	GAAGAC	1 cut(s)	510
BplI	GAGNNNNNCTC	2 cut(s)	740, 772
BpmI	CTGGAG	1 cut(s)	353
BpuMI	CCSGG	2 cut(s)	111, 446
BsaHI	GRCGYC	3 cut(s)	120, 213, 228
BsaI	GGTCTC	1 cut(s)	232
BsaJI	CCNNGG	6 cut(s)	109, 188, 208, 223, 747, 774
Bsc4I	CCNNNNNNNGG	2 cut(s)	376, 641
Bse118I	RCCGGY	1 cut(s)	158
Bse21I	CCTNAGG	1 cut(s)	660
Bse3DI	GCAATG	1 cut(s)	253
BseBI	CCWGG	2 cut(s)	243, 278
BseDI	CCNNGG	6 cut(s)	109, 188, 208, 223, 747, 774
BseGI	GGATG	3 cut(s)	365, 454, 757
BseLI	CCNNNNNNNGG	2 cut(s)	376, 641
BseMI	GCAATG	1 cut(s)	253
BseRI	GAGGAG	3 cut(s)	164, 174, 401
BseSI	GKGCMC	1 cut(s)	440
BseX3I	CGGCCG	2 cut(s)	112, 160
BseXI	GCAGC	1 cut(s)	662
BsgI	GTGCAG	1 cut(s)	595
Bsh1236I	CGCG	2 cut(s)	140, 210
Bsh1285I	CGRYCG	2 cut(s)	115, 163
BshFI	GGCC	4 cut(s)	114, 162, 320, 773
BshNI	GGYRCC	2 cut(s)	212, 227
BsiEI	CGRYCG	2 cut(s)	115, 163
BsiHKAI	GWGCWC	1 cut(s)	440
BsiSI	CCGG	3 cut(s)	111, 159, 445
BslFI	GGGAC	3 cut(s)	138, 394, 586
BslI	CCNNNNNNNGG	2 cut(s)	376, 641
BsmAI	GTCTC	3 cut(s)	186, 232, 383
BsmBI	CGTCTC	1 cut(s)	186
BsmFI	GGGAC	3 cut(s)	138, 394, 586
BsmI	GAATGC	2 cut(s)	295, 526
BsnI	GGCC	4 cut(s)	114, 162, 320, 773
Bso31I	GGTCTC	1 cut(s)	232
Bsp1286I	GDGCHC	1 cut(s)	440
Bsp143I	GATC	3 cut(s)	265, 469, 484
BspACI	CCGC	6 cut(s)	8, 123, 156, 195, 208, 210
BspANI	GGCC	4 cut(s)	114, 162, 320, 773
BspFNI	CGCG	2 cut(s)	140, 210
BspLI	GGNNCC	5 cut(s)	214, 229, 471, 574, 575
BspMI	ACCTGC	1 cut(s)	617
BspPI	GGATC	2 cut(s)	464, 477
BspT107I	GGYRCC	2 cut(s)	212, 227
BspTNI	GGTCTC	1 cut(s)	232
BsrDI	GCAATG	1 cut(s)	253
BsrFI	RCCGGY	1 cut(s)	158
BssAI	RCCGGY	1 cut(s)	158
BssECI	CCNNGG	6 cut(s)	109, 188, 208, 223, 747, 774
BssMI	GATC	3 cut(s)	265, 469, 484
BssNI	GRCGYC	3 cut(s)	120, 213, 228
BssT1I	CCWWGG	3 cut(s)	188, 223, 774
Bst2UI	CCWGG	2 cut(s)	243, 278
Bst4CI	ACNGT	2 cut(s)	394, 616
Bst6I	CTCTTC	2 cut(s)	76, 304
BstACI	GRCGYC	3 cut(s)	120, 213, 228
BstC8I	GCNNGC	2 cut(s)	6, 160
BstDEI	CTNAG	1 cut(s)	660
BstDSI	CCRYGG	1 cut(s)	208
BstF5I	GGATG	3 cut(s)	365, 454, 757
BstFNI	CGCG	2 cut(s)	140, 210
BstH2I	RGCGCY	2 cut(s)	216, 231
BstHHI	GCGC	2 cut(s)	215, 230
BstKTI	GATC	3 cut(s)	268, 472, 487
BstMAI	GTCTC	3 cut(s)	186, 232, 383
BstMBI	GATC	3 cut(s)	265, 469, 484
BstMCI	CGRYCG	2 cut(s)	115, 163
BstMWI	GCNNNNNNNGC	2 cut(s)	14, 487
BstNI	CCWGG	2 cut(s)	243, 278
BstNSI	RCATGY	2 cut(s)	436, 605
BstSCI	CCNGG	4 cut(s)	109, 241, 276, 444
BstSLI	GKGCMC	1 cut(s)	440
BstUI	CGCG	2 cut(s)	140, 210
BstV1I	GCAGC	1 cut(s)	662
BstV2I	GAAGAC	1 cut(s)	510
BstX2I	RGATCY	1 cut(s)	469
BstYI	RGATCY	1 cut(s)	469
BstZI	CGGCCG	2 cut(s)	112, 160
Bsu36I	CCTNAGG	1 cut(s)	660
BsuRI	GGCC	4 cut(s)	114, 162, 320, 773
BtgI	CCRYGG	1 cut(s)	208
BtsCI	GGATG	3 cut(s)	365, 454, 757
BtsIMutI	CAGTG	1 cut(s)	612
BveI	ACCTGC	1 cut(s)	617
Cac8I	GCNNGC	2 cut(s)	6, 160
CfoI	GCGC	2 cut(s)	215, 230
Cfr10I	RCCGGY	1 cut(s)	158
Cfr13I	GGNCC	4 cut(s)	192, 442, 573, 771
Cfr42I	CCGCGG	1 cut(s)	211
CpoI	CGGWCCG	1 cut(s)	442
CseI	GACGC	1 cut(s)	128
CsiI	ACCWGGT	1 cut(s)	276
Csp6I	GTAC	1 cut(s)	704
CspI	CGGWCCG	1 cut(s)	442
CviAII	CATG	4 cut(s)	302, 412, 433, 602
CviQI	GTAC	1 cut(s)	704
DdeI	CTNAG	1 cut(s)	660
DinI	GGCGCC	2 cut(s)	214, 229
DpnI	GATC	3 cut(s)	267, 471, 486
DpnII	GATC	3 cut(s)	265, 469, 484
EaeI	YGGCCR	2 cut(s)	112, 160
EagI	CGGCCG	2 cut(s)	112, 160
Eam1104I	CTCTTC	2 cut(s)	76, 304
EarI	CTCTTC	2 cut(s)	76, 304
EciI	GGCGGA	1 cut(s)	184
EclXI	CGGCCG	2 cut(s)	112, 160
Eco130I	CCWWGG	3 cut(s)	188, 223, 774
Eco31I	GGTCTC	1 cut(s)	232
Eco47I	GGWCC	3 cut(s)	192, 442, 573
Eco52I	CGGCCG	2 cut(s)	112, 160
Eco81I	CCTNAGG	1 cut(s)	660
EcoO109I	RGGNCCY	1 cut(s)	573
EcoRII	CCWGG	2 cut(s)	241, 276
EcoT14I	CCWWGG	3 cut(s)	188, 223, 774
EgeI	GGCGCC	2 cut(s)	214, 229
EheI	GGCGCC	2 cut(s)	214, 229
ErhI	CCWWGG	3 cut(s)	188, 223, 774
Esp3I	CGTCTC	1 cut(s)	186
FaeI	CATG	4 cut(s)	305, 415, 436, 605
FaqI	GGGAC	3 cut(s)	138, 394, 586
FatI	CATG	4 cut(s)	301, 411, 432, 601
FauI	CCCGC	1 cut(s)	163
FbaI	TGATCA	1 cut(s)	484
Fnu4HI	GCNGC	4 cut(s)	15, 123, 211, 651
FokI	GGATG	3 cut(s)	352, 461, 764
Fsp4HI	GCNGC	4 cut(s)	15, 123, 211, 651
GlaI	GCGC	2 cut(s)	214, 229
GluI	GCNGC	4 cut(s)	15, 123, 211, 651
GsuI	CTGGAG	1 cut(s)	353
HaeII	RGCGCY	2 cut(s)	216, 231
HaeIII	GGCC	4 cut(s)	114, 162, 320, 773
HapII	CCGG	3 cut(s)	111, 159, 445
HgaI	GACGC	1 cut(s)	128
HhaI	GCGC	2 cut(s)	215, 230
Hin1I	GRCGYC	3 cut(s)	120, 213, 228
Hin1II	CATG	4 cut(s)	305, 415, 436, 605
Hin6I	GCGC	2 cut(s)	213, 228
HinP1I	GCGC	2 cut(s)	213, 228
HinfI	GANTC	5 cut(s)	219, 253, 350, 728, 755
HpaII	CCGG	3 cut(s)	111, 159, 445
HphI	GGTGA	4 cut(s)	34, 124, 292, 737
Hpy166II	GTNNAC	2 cut(s)	349, 438
Hpy188III	TCNNGA	2 cut(s)	341, 473
Hpy8I	GTNNAC	2 cut(s)	349, 438
HpyAV	CCTTC	2 cut(s)	299, 762
HpyCH4III	ACNGT	2 cut(s)	394, 616
HpyCH4IV	ACGT	1 cut(s)	507
HpyCH4V	TGCA	5 cut(s)	4, 438, 587, 612, 650
HpyF10VI	GCNNNNNNNGC	2 cut(s)	14, 487
HpyF3I	CTNAG	1 cut(s)	660
HpySE526I	ACGT	1 cut(s)	507
Hsp92I	GRCGYC	3 cut(s)	120, 213, 228
Hsp92II	CATG	4 cut(s)	305, 415, 436, 605
HspAI	GCGC	2 cut(s)	213, 228
KasI	GGCGCC	2 cut(s)	212, 227
KflI	GGGWCCC	1 cut(s)	573
KroI	GCCGGC	1 cut(s)	158
KroNI	GCCGGC	1 cut(s)	160
Ksp22I	TGATCA	1 cut(s)	484
KspI	CCGCGG	1 cut(s)	211
Kzo9I	GATC	3 cut(s)	265, 469, 484
LmnI	GCTCC	2 cut(s)	334, 559
Lsp1109I	GCAGC	1 cut(s)	662
LweI	GCATC	1 cut(s)	596
MabI	ACCWGGT	1 cut(s)	276
MaeII	ACGT	1 cut(s)	507
MaeIII	GTNAC	3 cut(s)	116, 422, 604
MalI	GATC	3 cut(s)	267, 471, 486
MboI	GATC	3 cut(s)	265, 469, 484
MboII	GAAGA	7 cut(s)	63, 66, 69, 72, 321, 515, 551
MflI	RGATCY	1 cut(s)	469
MhlI	GDGCHC	1 cut(s)	440
MluCI	AATT	1 cut(s)	94
Mly113I	GGCGCC	2 cut(s)	213, 228
MlyI	GAGTC	4 cut(s)	228, 344, 737, 749
MroNI	GCCGGC	1 cut(s)	158
MseI	TTAA	3 cut(s)	53, 327, 567
MslI	CAYNNNNRTG	2 cut(s)	300, 431
MspA1I	CMGCKG	1 cut(s)	210
MspI	CCGG	3 cut(s)	111, 159, 445
MspR9I	CCNGG	4 cut(s)	111, 243, 278, 446
Mva1269I	GAATGC	2 cut(s)	295, 526
MvaI	CCWGG	2 cut(s)	243, 278
MvnI	CGCG	2 cut(s)	140, 210
MwoI	GCNNNNNNNGC	2 cut(s)	14, 487
NaeI	GCCGGC	1 cut(s)	160
NarI	GGCGCC	2 cut(s)	213, 228
NciI	CCSGG	2 cut(s)	111, 446
NdeII	GATC	3 cut(s)	265, 469, 484
NgoMIV	GCCGGC	1 cut(s)	158
NlaIII	CATG	4 cut(s)	305, 415, 436, 605
NlaIV	GGNNCC	5 cut(s)	214, 229, 471, 574, 575
NmuCI	GTSAC	2 cut(s)	116, 604
NspI	RCATGY	2 cut(s)	436, 605
PciI	ACATGT	2 cut(s)	432, 601
PctI	GAATGC	2 cut(s)	295, 526
PdiI	GCCGGC	1 cut(s)	160
PfeI	GAWTC	1 cut(s)	253
PflMI	CCANNNNNTGG	1 cut(s)	376
PkrI	GCNGC	4 cut(s)	16, 124, 212, 652
PleI	GAGTC	4 cut(s)	227, 344, 736, 749
PluTI	GGCGCC	2 cut(s)	216, 231
PpsI	GAGTC	4 cut(s)	227, 344, 736, 749
PpuMI	RGGWCCY	1 cut(s)	573
PscI	ACATGT	2 cut(s)	432, 601
Psp5II	RGGWCCY	1 cut(s)	573
Psp6I	CCWGG	2 cut(s)	241, 276
PspGI	CCWGG	2 cut(s)	241, 276
PspN4I	GGNNCC	5 cut(s)	214, 229, 471, 574, 575
PspPI	GGNCC	4 cut(s)	192, 442, 573, 771
PspPPI	RGGWCCY	1 cut(s)	573
PsuI	RGATCY	1 cut(s)	469
RsaI	GTAC	1 cut(s)	705
RsaNI	GTAC	1 cut(s)	704
RseI	CAYNNNNRTG	2 cut(s)	300, 431
Rsr2I	CGGWCCG	1 cut(s)	442
RsrII	CGGWCCG	1 cut(s)	442
SacII	CCGCGG	1 cut(s)	211
SaqAI	TTAA	3 cut(s)	53, 327, 567
SatI	GCNGC	4 cut(s)	15, 123, 211, 651
Sau3AI	GATC	3 cut(s)	265, 469, 484
Sau96I	GGNCC	4 cut(s)	192, 442, 573, 771
SchI	GAGTC	4 cut(s)	228, 344, 737, 749
ScrFI	CCNGG	4 cut(s)	111, 243, 278, 446
SduI	GDGCHC	1 cut(s)	440
SexAI	ACCWGGT	1 cut(s)	276
SfaNI	GCATC	1 cut(s)	596
SfoI	GGCGCC	2 cut(s)	214, 229
Sfr303I	CCGCGG	1 cut(s)	211
SgrBI	CCGCGG	1 cut(s)	211
SinI	GGWCC	3 cut(s)	192, 442, 573
SmiMI	CAYNNNNRTG	2 cut(s)	300, 431
Sse9I	AATT	1 cut(s)	94
SsiI	CCGC	6 cut(s)	8, 123, 156, 195, 208, 210
SspDI	GGCGCC	2 cut(s)	212, 227
StyD4I	CCNGG	4 cut(s)	109, 241, 276, 444
StyI	CCWWGG	3 cut(s)	188, 223, 774
TaaI	ACNGT	2 cut(s)	394, 616
TaiI	ACGT	1 cut(s)	510
TasI	AATT	1 cut(s)	94
TauI	GCSGC	2 cut(s)	125, 213
TfiI	GAWTC	1 cut(s)	253
Tru1I	TTAA	3 cut(s)	53, 327, 567
Tru9I	TTAA	3 cut(s)	53, 327, 567
TscAI	CASTG	1 cut(s)	619
TseFI	GTSAC	2 cut(s)	116, 604
TseI	GCWGC	2 cut(s)	14, 650
Tsp45I	GTSAC	2 cut(s)	116, 604
TspDTI	ATGAA	3 cut(s)	318, 516, 560
TspGWI	ACGGA	1 cut(s)	455
TspRI	CASTG	1 cut(s)	619
Van91I	CCANNNNNTGG	1 cut(s)	376
VneI	GTGCAC	1 cut(s)	436
VpaK11BI	GGWCC	3 cut(s)	192, 442, 573
XceI	RCATGY	2 cut(s)	436, 605
XcmI	CCANNNNNNNNNTGG	1 cut(s)	328

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.