Basic Information

Type: gene

Biological Identity

Species

pyrus_communis

Chromosome

Chr11

Orthogroup ID

OG0009317

Physical Location & Seq

Genomic Coordinates Forward (+)

298706 .. 301457

Gene Structure 2752 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

pycom11g00380.10

Sequence Viewer

CDS Protein Promoter (2k)

Length: 822 bp

ATGCAGGCACTGGCAAAGCTGTGCAAGAATGTCCCTCGCCCTCTCTTTCTCCTCGCTCCGAGAACCTTAACCACACTTAATTCTTCTTCTTCGTCTTCTTCTTCTTCTTCTTCTTCTTCTTCTTCTTCTTCTTCTTTATCGCACTCACTAACCTCACCGGGCTGTGATTCCACCATCACCCACAGCACCAACACGTGTTTCACCGGAAGAACTCTGCTTCGCACTCCTTGGTCCGCCATTCAACAACGCGGAGCCGTCGTCCACGGCGGTGATGTAAAACCTGGAAATGTCATTGCAAGGAATGATCGCATTTACCAGGTGTTAAAGGCGGATCATTCACATGAAGGAAGAGGAAAAGCGGTTGTTAAGGTGGAGGTTCGTGATGTTGACTCCGGGAACAAGACATCCTTACGATTGTTGACGGATGAGCAAATTGATAAAGTATTTGTTGAATCAAAAACTTACGTTTACATGTGCACAGATCGTGATGGCATTGTAGTATTGATAGACCCTGATACACTTGATCAACTTGATGTGCCTGAGGACTTGTTTGGAAAGAAGGCTAAATACCTACAAGAGGAAATGAAAGTGACAGTGGAGCTGTATAATGATAAACCTTTATCCGTTAAAGTTCCAAAACACGTGACATGTGTTGTCAAGGAAGCACAAAATCCTGTGAGGGGGACTGCACAAGCACCTAAGGAAATATTAGCTGTGATGGAAAACGGCTTCACTGTCAAAGTACCACCTCACATTGTAGAAGGTGAAGCTGTGGTGGTTGACACTGATGACGACTCTTATGTTAAAAGGGCCAAGCCATAA

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

No ontology terms assigned.

KEGG Pathways

Metabolic & Signaling

No pathways identified.

Pfam Domains

Protein Families

EFP EFP_N Elong-fact-P_C

Protein Analysis

274

Amino Acids

29.75

Weight (kDa)

7.66

Isoelectric Point (pI)

33.29

Instability Index

Protein Domains (Pfam)

No Pfam domains detected for this protein.

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

Style Settings

Font Size (px)

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Align Labels (Cladogram)

Image

Tree File

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Publication-ready

iTOL Interactive Tree Of Life · Most popular EvolView Flexible annotations MEGA Desktop phylogenetics suite FigTree Desktop tree editor

Orthologous Genes (Group: OG0009317)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT4G26310 AT4G26310
fragaria_vesca	FvH4_3g45540 FvH4_3g45540 FvH4_3g45540
malus_domestica	MD03G1004200.v1.1 MD11G1003800.v1.1
prunus_persica	Prupe.6G003800_v2.0.a1 Prupe.6G003800_v2.0.a1
pyrus_communis	pycom11g00380
rosa_chinensis	RchiOBHm_Chr5g0083721
rosa_laevigata	RLG00000037048
rosa_multiflora	Rmu_sc0001287.1_g000003 Rmu_sc0002184.1_g000001
rosa_roxburghii	Rroxscaffold_1G00000860 Rroxscaffold_1G00015100
rosa_rugosa	Rorug05G0485300
rosa_samantha	Rh5AG538500 Rh5BG563800 Rh5CG585800 Rh5DG572100
rosa_wichuraiana	Rw5G050080

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AccII	CGCG	1 cut(s)	249
AciI	CCGC	5 cut(s)	234, 249, 267, 329, 359
AclWI	GGATC	1 cut(s)	339
AcvI	CACGTG	2 cut(s)	195, 643
AfaI	GTAC	1 cut(s)	744
AfiI	CCNNNNNNNGG	2 cut(s)	577, 680
AflIII	ACRYGT	5 cut(s)	192, 194, 471, 640, 647
AgsI	TTSAA	2 cut(s)	242, 452
AjnI	CCWGG	2 cut(s)	280, 315
AjuI	GAANNNNNNNTTGG	2 cut(s)	182, 214
AleI	CACNNNNGTG	1 cut(s)	267
AloI	GAACNNNNNNTCC	2 cut(s)	389, 421
AluBI	AGCT	4 cut(s)	19, 601, 713, 770
AluI	AGCT	4 cut(s)	19, 601, 713, 770
Alw21I	GWGCWC	1 cut(s)	479
Alw44I	GTGCAC	1 cut(s)	475
AlwI	GGATC	1 cut(s)	339
AlwNI	CAGNNNCTG	1 cut(s)	10
AoxI	GGCC	1 cut(s)	810
ApaLI	GTGCAC	1 cut(s)	475
AspS9I	GGNCC	2 cut(s)	231, 810
AsuC2I	CCSGG	2 cut(s)	159, 394
AsuHPI	GGTGA	5 cut(s)	147, 169, 193, 281, 776
AvaII	GGWCC	1 cut(s)	231
AxyI	CCTNAGG	2 cut(s)	540, 699
BaeGI	GKGCMC	1 cut(s)	479
BarI	GAAGNNNNNNTAC	2 cut(s)	551, 583
BbrPI	CACGTG	2 cut(s)	195, 643
BbsI	GAAGAC	1 cut(s)	87
Bbv12I	GWGCWC	1 cut(s)	479
BccI	CCATC	3 cut(s)	182, 482, 712
BceAI	ACGGC	3 cut(s)	239, 280, 742
BciT130I	CCWGG	2 cut(s)	282, 317
BclI	TGATCA	1 cut(s)	523
BcnI	CCSGG	2 cut(s)	159, 394
Bme1390I	CCNGG	4 cut(s)	159, 282, 317, 394
Bme18I	GGWCC	1 cut(s)	231
BmgT120I	GGNCC	2 cut(s)	231, 810
BmiI	GGNNCC	1 cut(s)	253
BmrFI	CCNGG	4 cut(s)	159, 282, 317, 394
BpiI	GAAGAC	1 cut(s)	87
BpuMI	CCSGG	2 cut(s)	159, 394
BsaAI	YACGTR	2 cut(s)	195, 643
BsaJI	CCNNGG	2 cut(s)	227, 262
BsaWI	WCCGGW	1 cut(s)	203
BsaXI	ACNNNNNCTCC	2 cut(s)	243, 273
Bsc4I	CCNNNNNNNGG	2 cut(s)	577, 680
Bse1I	ACTGG	1 cut(s)	15
Bse21I	CCTNAGG	2 cut(s)	540, 699
Bse3DI	GCAATG	1 cut(s)	291
BseBI	CCWGG	2 cut(s)	282, 317
BseDI	CCNNGG	2 cut(s)	227, 262
BseGI	GGATG	2 cut(s)	404, 430
BseLI	CCNNNNNNNGG	2 cut(s)	577, 680
BseMI	GCAATG	1 cut(s)	291
BseMII	CTCAG	1 cut(s)	531
BseNI	ACTGG	1 cut(s)	15
BseRI	GAGGAG	1 cut(s)	41
BseSI	GKGCMC	1 cut(s)	479
BsgI	GTGCAG	1 cut(s)	672
Bsh1236I	CGCG	1 cut(s)	249
BshFI	GGCC	1 cut(s)	812
BsiHKAI	GWGCWC	1 cut(s)	479
BsiSI	CCGG	3 cut(s)	158, 204, 393
BslFI	GGGAC	2 cut(s)	17, 697
BslI	CCNNNNNNNGG	2 cut(s)	577, 680
BsmFI	GGGAC	2 cut(s)	17, 697
BsnI	GGCC	1 cut(s)	812
Bsp1286I	GDGCHC	1 cut(s)	479
Bsp143I	GATC	4 cut(s)	304, 331, 481, 523
BspACI	CCGC	5 cut(s)	234, 249, 267, 329, 359
BspANI	GGCC	1 cut(s)	812
BspCNI	CTCAG	1 cut(s)	532
BspFNI	CGCG	1 cut(s)	249
BspLI	GGNNCC	1 cut(s)	253
BspPI	GGATC	1 cut(s)	339
BsrDI	GCAATG	1 cut(s)	291
BsrI	ACTGG	1 cut(s)	15
BssECI	CCNNGG	2 cut(s)	227, 262
BssMI	GATC	4 cut(s)	304, 331, 481, 523
BssT1I	CCWWGG	1 cut(s)	227
Bst2UI	CCWGG	2 cut(s)	282, 317
Bst4CI	ACNGT	2 cut(s)	595, 736
Bst6I	CTCTTC	1 cut(s)	343
BstBAI	YACGTR	2 cut(s)	195, 643
BstC8I	GCNNGC	1 cut(s)	6
BstDEI	CTNAG	2 cut(s)	540, 699
BstDSI	CCRYGG	1 cut(s)	262
BstENI	CCTNNNNNAGG	1 cut(s)	575
BstF5I	GGATG	2 cut(s)	404, 430
BstFNI	CGCG	1 cut(s)	249
BstKTI	GATC	4 cut(s)	307, 334, 484, 526
BstMBI	GATC	4 cut(s)	304, 331, 481, 523
BstNI	CCWGG	2 cut(s)	282, 317
BstNSI	RCATGY	2 cut(s)	475, 651
BstSCI	CCNGG	4 cut(s)	157, 280, 315, 392
BstSLI	GKGCMC	1 cut(s)	479
BstUI	CGCG	1 cut(s)	249
BstV2I	GAAGAC	1 cut(s)	87
Bsu36I	CCTNAGG	2 cut(s)	540, 699
BsuRI	GGCC	1 cut(s)	812
BtgI	CCRYGG	1 cut(s)	262
BtsCI	GGATG	2 cut(s)	404, 430
BtsIMutI	CAGTG	4 cut(s)	8, 600, 732, 783
Cac8I	GCNNGC	1 cut(s)	6
CaiI	CAGNNNCTG	1 cut(s)	10
Cfr13I	GGNCC	2 cut(s)	231, 810
CsiI	ACCWGGT	1 cut(s)	315
Csp6I	GTAC	1 cut(s)	743
CviAII	CATG	3 cut(s)	341, 472, 648
CviQI	GTAC	1 cut(s)	743
DdeI	CTNAG	2 cut(s)	540, 699
DpnI	GATC	4 cut(s)	306, 333, 483, 525
DpnII	GATC	4 cut(s)	304, 331, 481, 523
Eam1104I	CTCTTC	1 cut(s)	343
EarI	CTCTTC	1 cut(s)	343
EciI	GGCGGA	2 cut(s)	223, 344
Eco130I	CCWWGG	1 cut(s)	227
Eco47I	GGWCC	1 cut(s)	231
Eco72I	CACGTG	2 cut(s)	195, 643
Eco81I	CCTNAGG	2 cut(s)	540, 699
EcoNI	CCTNNNNNAGG	1 cut(s)	575
EcoRII	CCWGG	2 cut(s)	280, 315
EcoT14I	CCWWGG	1 cut(s)	227
ErhI	CCWWGG	1 cut(s)	227
FaeI	CATG	3 cut(s)	344, 475, 651
FaiI	YATR	6 cut(s)	342, 473, 606, 649, 801, 820
FalI	AAGNNNNNCTT	2 cut(s)	392, 424
FaqI	GGGAC	2 cut(s)	17, 697
FatI	CATG	3 cut(s)	340, 471, 647
FbaI	TGATCA	1 cut(s)	523
FokI	GGATG	2 cut(s)	391, 437
HaeIII	GGCC	1 cut(s)	812
HapII	CCGG	3 cut(s)	158, 204, 393
Hin1II	CATG	3 cut(s)	344, 475, 651
HincII	GTYRAC	3 cut(s)	388, 420, 781
HindII	GTYRAC	3 cut(s)	388, 420, 781
HinfI	GANTC	4 cut(s)	167, 389, 452, 794
HpaII	CCGG	3 cut(s)	158, 204, 393
HphI	GGTGA	5 cut(s)	147, 169, 193, 281, 776
Hpy166II	GTNNAC	6 cut(s)	262, 388, 420, 469, 477, 781
Hpy188I	TCNGA	1 cut(s)	60
Hpy188III	TCNNGA	2 cut(s)	380, 485
Hpy8I	GTNNAC	6 cut(s)	262, 388, 420, 469, 477, 781
Hpy99I	CGWCG	1 cut(s)	260
HpyAV	CCTTC	3 cut(s)	338, 553, 755
HpyCH4III	ACNGT	2 cut(s)	595, 736
HpyCH4IV	ACGT	3 cut(s)	194, 465, 642
HpyCH4V	TGCA	5 cut(s)	4, 24, 296, 477, 689
HpyF3I	CTNAG	2 cut(s)	540, 699
HpySE526I	ACGT	3 cut(s)	194, 465, 642
Hsp92II	CATG	3 cut(s)	344, 475, 651
Ksp22I	TGATCA	1 cut(s)	523
Kzo9I	GATC	4 cut(s)	304, 331, 481, 523
LmnI	GCTCC	3 cut(s)	61, 251, 598
MabI	ACCWGGT	1 cut(s)	315
MaeII	ACGT	3 cut(s)	194, 465, 642
MaeIII	GTNAC	2 cut(s)	589, 643
MalI	GATC	4 cut(s)	306, 333, 483, 525
MboI	GATC	4 cut(s)	304, 331, 481, 523
MhlI	GDGCHC	1 cut(s)	479
MluCI	AATT	2 cut(s)	79, 432
MlyI	GAGTC	2 cut(s)	383, 788
MseI	TTAA	6 cut(s)	68, 78, 323, 366, 627, 804
MslI	CAYNNNNRTG	2 cut(s)	267, 339
MspI	CCGG	3 cut(s)	158, 204, 393
MspR9I	CCNGG	4 cut(s)	159, 282, 317, 394
MvaI	CCWGG	2 cut(s)	282, 317
MvnI	CGCG	1 cut(s)	249
NciI	CCSGG	2 cut(s)	159, 394
NdeII	GATC	4 cut(s)	304, 331, 481, 523
NlaIII	CATG	3 cut(s)	344, 475, 651
NlaIV	GGNNCC	1 cut(s)	253
NmuCI	GTSAC	2 cut(s)	589, 643
NspI	RCATGY	2 cut(s)	475, 651
OliI	CACNNNNGTG	1 cut(s)	267
PciI	ACATGT	2 cut(s)	471, 647
PfeI	GAWTC	2 cut(s)	167, 452
PfoI	TCCNGGA	1 cut(s)	392
PleI	GAGTC	2 cut(s)	383, 788
PmaCI	CACGTG	2 cut(s)	195, 643
PmlI	CACGTG	2 cut(s)	195, 643
PpsI	GAGTC	2 cut(s)	383, 788
Ppu21I	YACGTR	2 cut(s)	195, 643
PscI	ACATGT	2 cut(s)	471, 647
Psp6I	CCWGG	2 cut(s)	280, 315
PspCI	CACGTG	2 cut(s)	195, 643
PspGI	CCWGG	2 cut(s)	280, 315
PspN4I	GGNNCC	1 cut(s)	253
PspPI	GGNCC	2 cut(s)	231, 810
PstNI	CAGNNNCTG	1 cut(s)	10
RsaI	GTAC	1 cut(s)	744
RsaNI	GTAC	1 cut(s)	743
RseI	CAYNNNNRTG	2 cut(s)	267, 339
SaqAI	TTAA	6 cut(s)	68, 78, 323, 366, 627, 804
Sau3AI	GATC	4 cut(s)	304, 331, 481, 523
Sau96I	GGNCC	2 cut(s)	231, 810
SchI	GAGTC	2 cut(s)	383, 788
ScrFI	CCNGG	4 cut(s)	159, 282, 317, 394
SduI	GDGCHC	1 cut(s)	479
SexAI	ACCWGGT	1 cut(s)	315
SinI	GGWCC	1 cut(s)	231
SmiMI	CAYNNNNRTG	2 cut(s)	267, 339
Sse9I	AATT	2 cut(s)	79, 432
SsiI	CCGC	5 cut(s)	234, 249, 267, 329, 359
SspI	AATATT	1 cut(s)	708
StyD4I	CCNGG	4 cut(s)	157, 280, 315, 392
StyI	CCWWGG	1 cut(s)	227
TaaI	ACNGT	2 cut(s)	595, 736
TaiI	ACGT	3 cut(s)	197, 468, 645
TasI	AATT	2 cut(s)	79, 432
TfiI	GAWTC	2 cut(s)	167, 452
Tru1I	TTAA	6 cut(s)	68, 78, 323, 366, 627, 804
Tru9I	TTAA	6 cut(s)	68, 78, 323, 366, 627, 804
TscAI	CASTG	4 cut(s)	15, 600, 739, 790
TseFI	GTSAC	2 cut(s)	589, 643
Tsp45I	GTSAC	2 cut(s)	589, 643
TspDTI	ATGAA	2 cut(s)	357, 599
TspGWI	ACGGA	2 cut(s)	437, 613
TspRI	CASTG	4 cut(s)	15, 600, 739, 790
VneI	GTGCAC	1 cut(s)	475
VpaK11BI	GGWCC	1 cut(s)	231
XagI	CCTNNNNNAGG	1 cut(s)	575
XceI	RCATGY	2 cut(s)	475, 651

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.