Basic Information

Type: gene

Biological Identity

Species

arabidopsis_thaliana

Chromosome

Orthogroup ID

OG0007994

Physical Location & Seq

Genomic Coordinates Reverse (-)

13372422 .. 13376332

Gene Structure 3911 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

AT4G26480.3

Sequence Viewer

CDS Protein Promoter (2k)

Length: 927 bp

ATGATGATGATGACGTCACTTGGTGGTGGTGCTGGAGGCGGCGGAGGAGGTGGTGGTAGTGGTGGTGGGAGATTTGTGACGTATCCGCCGCCTCTATCTGTGCCTCCGTCGGCTCCTCAGTCACCTAACTTCTCTGGTGGTCTCCGATCACAGCCTTCTTTCCTCGTTGAGCAAGAGAAGTATCTTTCTGAGTTACTTGCAGAGCGTCACAAGCTTACTCCATTTTTGCCTGTGCTTCCACATGTTTGCCGGCTCATGAACCAAGAAATTTTGCGTGTAACCACGCTGTTGGAGAATGCCTTAAGTCAGAGTAGGTTTGATCACCCTAGCCCTCTGGCTTCTGGAGGGATATTTCAGAATTCAAGAGCTGACATGAACGGATGGGCCTCACAATTTCCATCAGAAAGATCGGTTTCATCATCCCCAGCACCAAATTGGCTTAACTCTCCTGGTAGCTCGTCCGGTCTCATCGTCAAGCGAACAATAAGGGTGGATATTCCAGTCGACAAATACCCAAACTACAATTTTGTCGGTCGTCTCTTGGGTCCTAGAGGAAACTCCCTCAAACGAGTTGAAGCGAGTACTGATTGTCGTGTTCTAATAAGGGGTAGAGGCAGCATTAAAGATCCGATTAAGGAGGATATGATGAGAGGTAAACCTGGTTATGAGCACCTCAATGAACCACTCCACATCTTAGTCGAGGCAGAATTACCCATTGAAATAGTGGACGCACGTCTCATGCAAGCCCGTGAAATACTCGACGATCTACTTACTCCCGTGGAGGAAACCCATGATTTCTACAAGAAACAACAGCTACGGGAATTGGCCCTTCTCAACGGCAGTCTTCGAGAAGAAGGATCTCCAATGTCTGGTTCCATCTCACCTTACAATAGCCTCGGCATGAAGAGAGCTAAGACAAGGGGCTAA

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

No ontology terms assigned.

KEGG Pathways

Metabolic & Signaling

No pathways identified.

Pfam Domains

Protein Families

KH_1 STAR_dimer

Protein Analysis

308

Amino Acids

33.59

Weight (kDa)

9.05

Isoelectric Point (pI)

61.03

Instability Index

Protein Domains (Pfam)

Domain Name	Pfam ID	Position	E-value	Description
STAR_dimer	PF16544	59 - 97	5.4e-10	Homodimerisation region of STAR domain protein
KH-I_KHDC4-BBP	PF22675	170 - 257	2.4e-18	KHDC4/BBP-like, KH-domain type I

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

Style Settings

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Align Labels (Cladogram)

Image

Tree File

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Publication-ready

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Orthologous Genes (Group: OG0007994)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT4G26480 AT4G26480 AT4G26480 AT5G56140
fragaria_vesca	FvH4_3g41740 FvH4_3g41740 FvH4_3g41740 FvH4_3g41740
malus_domestica	MD03G1041400.v1.1 MD11G1042300.v1.1
prunus_persica	Prupe.6G033400_v2.0.a1 Prupe.6G033400_v2.0.a1
pyrus_communis	pycom03g03210
rosa_chinensis	RchiOBHm_Chr5g0074821
rosa_laevigata	RLG00000036508
rosa_multiflora	Rmu_sc0000909.1_g000002
rosa_roxburghii	Rroxscaffold_1G00006750
rosa_rugosa	Rorug05G0434500 Rorug05G0434600
rosa_samantha	Rh5AG492000 Rh5BG513400 Rh5CG537100 Rh5DG525500
rosa_wichuraiana	Rw5G045580

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AatII	GACGTC	1 cut(s)	17
AccB7I	CCANNNNNTGG	1 cut(s)	869
AccI	GTMKAC	1 cut(s)	504
AciI	CCGC	4 cut(s)	39, 42, 86, 89
AclWI	GGATC	2 cut(s)	620, 865
AcsI	RAATTY	2 cut(s)	267, 358
AcyI	GRCGYC	1 cut(s)	14
AdeI	CACNNNGTG	1 cut(s)	23
AfaI	GTAC	1 cut(s)	583
AfiI	CCNNNNNNNGG	1 cut(s)	869
AflII	CTTAAG	1 cut(s)	301
AflIII	ACRYGT	1 cut(s)	241
AgsI	TTSAA	3 cut(s)	363, 575, 719
AjiI	CACGTC	1 cut(s)	734
AjnI	CCWGG	2 cut(s)	448, 658
AjuI	GAANNNNNNNTTGG	2 cut(s)	856, 888
AluBI	AGCT	5 cut(s)	214, 368, 456, 814, 911
AluI	AGCT	5 cut(s)	214, 368, 456, 814, 911
Alw21I	GWGCWC	1 cut(s)	672
Alw26I	GTCTC	4 cut(s)	146, 470, 542, 740
AlwI	GGATC	2 cut(s)	620, 865
AoxI	GGCC	2 cut(s)	384, 825
ApeKI	GCWGC	1 cut(s)	615
ApoI	RAATTY	2 cut(s)	267, 358
AspS9I	GGNCC	3 cut(s)	384, 545, 826
AsuHPI	GGTGA	3 cut(s)	114, 314, 873
AvaII	GGWCC	1 cut(s)	545
BbsI	GAAGAC	1 cut(s)	836
Bbv12I	GWGCWC	1 cut(s)	672
BbvI	GCAGC	1 cut(s)	627
BccI	CCATC	3 cut(s)	375, 406, 884
BceAI	ACGGC	1 cut(s)	853
BciT130I	CCWGG	2 cut(s)	450, 660
BciVI	GTATCC	1 cut(s)	93
BclI	TGATCA	1 cut(s)	319
BcoDI	GTCTC	4 cut(s)	146, 470, 542, 740
BfaI	CTAG	2 cut(s)	327, 549
BfrI	CTTAAG	1 cut(s)	301
BfuI	GTATCC	1 cut(s)	93
BisI	GCNGC	3 cut(s)	40, 89, 616
BlsI	GCNGC	3 cut(s)	41, 90, 617
BmcAI	AGTACT	1 cut(s)	583
Bme1390I	CCNGG	2 cut(s)	450, 660
Bme18I	GGWCC	1 cut(s)	545
BmgBI	CACGTC	1 cut(s)	734
BmgT120I	GGNCC	3 cut(s)	384, 545, 826
BmiI	GGNNCC	3 cut(s)	114, 546, 874
BmrFI	CCNGG	2 cut(s)	450, 660
BoxI	GACNNNNGTC	1 cut(s)	732
BpiI	GAAGAC	1 cut(s)	836
BpmI	CTGGAG	2 cut(s)	54, 363
BsaHI	GRCGYC	1 cut(s)	14
BsaI	GGTCTC	2 cut(s)	146, 470
BsaJI	CCNNGG	2 cut(s)	777, 895
BsaWI	WCCGGW	1 cut(s)	461
Bsc4I	CCNNNNNNNGG	1 cut(s)	869
Bse118I	RCCGGY	1 cut(s)	249
Bse1I	ACTGG	1 cut(s)	500
BseBI	CCWGG	2 cut(s)	450, 660
BseDI	CCNNGG	2 cut(s)	777, 895
BseGI	GGATG	2 cut(s)	386, 419
BseLI	CCNNNNNNNGG	1 cut(s)	869
BseMII	CTCAG	2 cut(s)	131, 180
BseNI	ACTGG	1 cut(s)	500
BseRI	GAGGAG	2 cut(s)	60, 105
BseXI	GCAGC	1 cut(s)	627
BseYI	CCCAGC	1 cut(s)	424
Bsh1285I	CGRYCG	1 cut(s)	535
BshFI	GGCC	2 cut(s)	386, 827
BsiEI	CGRYCG	1 cut(s)	535
BsiHKAI	GWGCWC	1 cut(s)	672
BsiSI	CCGG	2 cut(s)	250, 462
BslI	CCNNNNNNNGG	1 cut(s)	869
BsmAI	GTCTC	4 cut(s)	146, 470, 542, 740
BsmBI	CGTCTC	2 cut(s)	542, 740
BsmI	GAATGC	1 cut(s)	301
BsnI	GGCC	2 cut(s)	386, 827
Bso31I	GGTCTC	2 cut(s)	146, 470
Bsp1286I	GDGCHC	1 cut(s)	672
Bsp143I	GATC	6 cut(s)	146, 319, 407, 625, 763, 857
BspACI	CCGC	4 cut(s)	39, 42, 86, 89
BspANI	GGCC	2 cut(s)	386, 827
BspCNI	CTCAG	2 cut(s)	130, 181
BspHI	TCATGA	1 cut(s)	255
BspLI	GGNNCC	3 cut(s)	114, 546, 874
BspPI	GGATC	2 cut(s)	620, 865
BspTI	CTTAAG	1 cut(s)	301
BspTNI	GGTCTC	2 cut(s)	146, 470
BsrFI	RCCGGY	1 cut(s)	249
BsrI	ACTGG	1 cut(s)	500
BssAI	RCCGGY	1 cut(s)	249
BssECI	CCNNGG	2 cut(s)	777, 895
BssMI	GATC	6 cut(s)	146, 319, 407, 625, 763, 857
BssNI	GRCGYC	1 cut(s)	14
Bst2UI	CCWGG	2 cut(s)	450, 660
Bst6I	CTCTTC	1 cut(s)	899
BstACI	GRCGYC	1 cut(s)	14
BstAFI	CTTAAG	1 cut(s)	301
BstC8I	GCNNGC	2 cut(s)	251, 744
BstDEI	CTNAG	4 cut(s)	117, 189, 694, 912
BstDSI	CCRYGG	1 cut(s)	777
BstF5I	GGATG	2 cut(s)	386, 419
BstKTI	GATC	6 cut(s)	149, 322, 410, 628, 766, 860
BstMAI	GTCTC	4 cut(s)	146, 470, 542, 740
BstMBI	GATC	6 cut(s)	146, 319, 407, 625, 763, 857
BstMCI	CGRYCG	1 cut(s)	535
BstMWI	GCNNNNNNNGC	1 cut(s)	211
BstNI	CCWGG	2 cut(s)	450, 660
BstNSI	RCATGY	1 cut(s)	245
BstPAI	GACNNNNGTC	1 cut(s)	732
BstSCI	CCNGG	2 cut(s)	448, 658
BstV1I	GCAGC	1 cut(s)	627
BstV2I	GAAGAC	1 cut(s)	836
BstX2I	RGATCY	2 cut(s)	625, 857
BstXI	CCANNNNNNTGG	1 cut(s)	289
BstYI	RGATCY	2 cut(s)	625, 857
BsuI	GTATCC	1 cut(s)	93
BsuRI	GGCC	2 cut(s)	386, 827
BtgI	CCRYGG	1 cut(s)	777
BtrI	CACGTC	1 cut(s)	734
BtsCI	GGATG	2 cut(s)	386, 419
Cac8I	GCNNGC	2 cut(s)	251, 744
CciI	TCATGA	1 cut(s)	255
Cfr10I	RCCGGY	1 cut(s)	249
Cfr13I	GGNCC	3 cut(s)	384, 545, 826
CseI	GACGC	2 cut(s)	194, 737
CsiI	ACCWGGT	1 cut(s)	658
Csp6I	GTAC	1 cut(s)	582
CspCI	CAANNNNNGTGG	2 cut(s)	471, 506
CviAII	CATG	6 cut(s)	242, 256, 373, 739, 791, 901
CviQI	GTAC	1 cut(s)	582
DdeI	CTNAG	4 cut(s)	117, 189, 694, 912
DpnI	GATC	6 cut(s)	148, 321, 409, 627, 765, 859
DpnII	GATC	6 cut(s)	146, 319, 407, 625, 763, 857
DraIII	CACNNNGTG	1 cut(s)	23
Eam1104I	CTCTTC	1 cut(s)	899
EarI	CTCTTC	1 cut(s)	899
EciI	GGCGGA	2 cut(s)	57, 75
Eco31I	GGTCTC	2 cut(s)	146, 470
Eco47I	GGWCC	1 cut(s)	545
EcoO109I	RGGNCCY	1 cut(s)	545
EcoRI	GAATTC	1 cut(s)	358
EcoRII	CCWGG	2 cut(s)	448, 658
Esp3I	CGTCTC	2 cut(s)	542, 740
FaeI	CATG	6 cut(s)	245, 259, 376, 742, 794, 904
FaiI	YATR	8 cut(s)	243, 257, 374, 644, 666, 740, 792, 902
FatI	CATG	6 cut(s)	241, 255, 372, 738, 790, 900
FbaI	TGATCA	1 cut(s)	319
FblI	GTMKAC	1 cut(s)	504
Fnu4HI	GCNGC	3 cut(s)	40, 89, 616
FokI	GGATG	2 cut(s)	393, 406
Fsp4HI	GCNGC	3 cut(s)	40, 89, 616
FspBI	CTAG	2 cut(s)	327, 549
GluI	GCNGC	3 cut(s)	40, 89, 616
GsaI	CCCAGC	1 cut(s)	428
GsuI	CTGGAG	2 cut(s)	54, 363
HaeIII	GGCC	2 cut(s)	386, 827
HapII	CCGG	2 cut(s)	250, 462
HgaI	GACGC	2 cut(s)	194, 737
Hin1I	GRCGYC	1 cut(s)	14
Hin1II	CATG	6 cut(s)	245, 259, 376, 742, 794, 904
HincII	GTYRAC	1 cut(s)	505
HindII	GTYRAC	1 cut(s)	505
HindIII	AAGCTT	1 cut(s)	212
HpaII	CCGG	2 cut(s)	250, 462
HphI	GGTGA	3 cut(s)	114, 314, 873
Hpy166II	GTNNAC	3 cut(s)	505, 656, 727
Hpy188I	TCNGA	6 cut(s)	146, 190, 309, 357, 403, 630
Hpy188III	TCNNGA	4 cut(s)	256, 342, 363, 848
Hpy8I	GTNNAC	3 cut(s)	505, 656, 727
Hpy99I	CGWCG	2 cut(s)	112, 764
HpyAV	CCTTC	3 cut(s)	165, 839, 848
HpyCH4IV	ACGT	3 cut(s)	14, 80, 733
HpyCH4V	TGCA	2 cut(s)	200, 742
HpyF10VI	GCNNNNNNNGC	1 cut(s)	211
HpyF3I	CTNAG	4 cut(s)	117, 189, 694, 912
HpySE526I	ACGT	3 cut(s)	14, 80, 733
Hsp92I	GRCGYC	1 cut(s)	14
Hsp92II	CATG	6 cut(s)	245, 259, 376, 742, 794, 904
KroI	GCCGGC	1 cut(s)	249
KroNI	GCCGGC	1 cut(s)	251
Ksp22I	TGATCA	1 cut(s)	319
Kzo9I	GATC	6 cut(s)	146, 319, 407, 625, 763, 857
LmnI	GCTCC	1 cut(s)	118
Lsp1109I	GCAGC	1 cut(s)	627
MabI	ACCWGGT	1 cut(s)	658
MaeI	CTAG	2 cut(s)	327, 549
MaeII	ACGT	3 cut(s)	14, 80, 733
MaeIII	GTNAC	6 cut(s)	15, 76, 120, 192, 206, 277
MalI	GATC	6 cut(s)	148, 321, 409, 627, 765, 859
MboI	GATC	6 cut(s)	146, 319, 407, 625, 763, 857
MboII	GAAGA	3 cut(s)	836, 863, 916
MflI	RGATCY	2 cut(s)	625, 857
MhlI	GDGCHC	1 cut(s)	672
MluCI	AATT	7 cut(s)	267, 358, 392, 433, 523, 707, 821
MmeI	TCCRAC	1 cut(s)	270
MroNI	GCCGGC	1 cut(s)	249
MseI	TTAA	4 cut(s)	302, 441, 621, 633
MslI	CAYNNNNRTG	1 cut(s)	675
MspCI	CTTAAG	1 cut(s)	301
MspI	CCGG	2 cut(s)	250, 462
MspR9I	CCNGG	2 cut(s)	450, 660
Mva1269I	GAATGC	1 cut(s)	301
MvaI	CCWGG	2 cut(s)	450, 660
MwoI	GCNNNNNNNGC	1 cut(s)	211
NaeI	GCCGGC	1 cut(s)	251
NdeII	GATC	6 cut(s)	146, 319, 407, 625, 763, 857
NgoMIV	GCCGGC	1 cut(s)	249
NlaIII	CATG	6 cut(s)	245, 259, 376, 742, 794, 904
NlaIV	GGNNCC	3 cut(s)	114, 546, 874
NmeAIII	GCCGAG	1 cut(s)	876
NmuCI	GTSAC	4 cut(s)	15, 76, 120, 206
NspI	RCATGY	1 cut(s)	245
PagI	TCATGA	1 cut(s)	255
PciI	ACATGT	1 cut(s)	241
PctI	GAATGC	1 cut(s)	301
PdiI	GCCGGC	1 cut(s)	251
PflMI	CCANNNNNTGG	1 cut(s)	869
PkrI	GCNGC	3 cut(s)	41, 90, 617
PpuMI	RGGWCCY	1 cut(s)	545
PscI	ACATGT	1 cut(s)	241
PshAI	GACNNNNGTC	1 cut(s)	732
Psp5II	RGGWCCY	1 cut(s)	545
Psp6I	CCWGG	2 cut(s)	448, 658
PspFI	CCCAGC	1 cut(s)	424
PspGI	CCWGG	2 cut(s)	448, 658
PspN4I	GGNNCC	3 cut(s)	114, 546, 874
PspPI	GGNCC	3 cut(s)	384, 545, 826
PspPPI	RGGWCCY	1 cut(s)	545
PsuI	RGATCY	2 cut(s)	625, 857
RsaI	GTAC	1 cut(s)	583
RsaNI	GTAC	1 cut(s)	582
RseI	CAYNNNNRTG	1 cut(s)	675
SalI	GTCGAC	1 cut(s)	503
SaqAI	TTAA	4 cut(s)	302, 441, 621, 633
SatI	GCNGC	3 cut(s)	40, 89, 616
Sau3AI	GATC	6 cut(s)	146, 319, 407, 625, 763, 857
Sau96I	GGNCC	3 cut(s)	384, 545, 826
ScaI	AGTACT	1 cut(s)	583
ScrFI	CCNGG	2 cut(s)	450, 660
SduI	GDGCHC	1 cut(s)	672
SexAI	ACCWGGT	1 cut(s)	658
SinI	GGWCC	1 cut(s)	545
SmiMI	CAYNNNNRTG	1 cut(s)	675
SmlI	CTYRAG	1 cut(s)	301
SmoI	CTYRAG	1 cut(s)	301
Sse9I	AATT	7 cut(s)	267, 358, 392, 433, 523, 707, 821
SsiI	CCGC	4 cut(s)	39, 42, 86, 89
SspMI	CTAG	2 cut(s)	327, 549
StyD4I	CCNGG	2 cut(s)	448, 658
TaiI	ACGT	3 cut(s)	17, 83, 736
TaqI	TCGA	4 cut(s)	504, 699, 759, 847
TaqII	GACCGA	1 cut(s)	521
TasI	AATT	7 cut(s)	267, 358, 392, 433, 523, 707, 821
TatI	WGTACW	1 cut(s)	581
TauI	GCSGC	2 cut(s)	42, 91
Tru1I	TTAA	4 cut(s)	302, 441, 621, 633
Tru9I	TTAA	4 cut(s)	302, 441, 621, 633
TseFI	GTSAC	4 cut(s)	15, 76, 120, 206
TseI	GCWGC	1 cut(s)	615
Tsp45I	GTSAC	4 cut(s)	15, 76, 120, 206
TspDTI	ATGAA	5 cut(s)	272, 389, 405, 693, 917
TspGWI	ACGGA	2 cut(s)	96, 393
Van91I	CCANNNNNTGG	1 cut(s)	869
Vha464I	CTTAAG	1 cut(s)	301
VpaK11BI	GGWCC	1 cut(s)	545
XapI	RAATTY	2 cut(s)	267, 358
XceI	RCATGY	1 cut(s)	245
XcmI	CCANNNNNNNNNTGG	2 cut(s)	432, 721
XmiI	GTMKAC	1 cut(s)	504
XspI	CTAG	2 cut(s)	327, 549
ZraI	GACGTC	1 cut(s)	15
ZrmI	AGTACT	1 cut(s)	583

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.