Basic Information

Type: gene

Biological Identity

Species

malus_domestica

Chromosome

Chr11

Orthogroup ID

OG0007994

Physical Location & Seq

Genomic Coordinates Forward (+)

3632262 .. 3636751

Gene Structure 4490 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

MD11G1042300.v1.1.491

Sequence Viewer

CDS Protein Promoter (2k)

Length: 900 bp

ATGGAAATGATGTCATCATCGGGCGGTGGAAGGTACATGGCTTACTCGCCTTCACCGTCGGCACCTCACTCCCCTCACCTCTCCGGCCTTCGCTCCGCCTCCTCCTCCGCCGCTCTCGTCGCCGCCGAGCAAGAAAAATATCTTTCTGAGCTGCTTGGCGAGCGTCACAAGCTGTGTCCATTTTTGCCAGTGCTGCCGAATTGCAACAGGTTACTAAACCAAGAAATATTGCGTGTAACTACACTGTTGGGGAATGCGTCAGTTTTAGGTCAAAGTGGGATTGAACTTGCTAGCCCCCTGGCATCTAGAGGAATGTTTTCAAATGGAGGTGCTGATGTGAATGGATGGGCATCACGTTTTCAATCAGAAATGTCAGGTTTATTACAGTCTTCATCAACCCAAAACTGGCTGAGTCCTCAAAGTAGCTCATCTGGTCTAATTGTGAAGCGAACAATCCGGGTGGATATTCCAGTTGACAAATATCCTAATTATAACTTTGTTGGGCGGTTGCTAGGCCCTAGAGGGAACTCTCTTAAGCGGGTGGAAGTGACTACTGAATGTCGTGTTCTGATCAGGGGACGTGGTAGCATAAAGGATCCGACTAAGGAAGAAATGATGAGAGGAAAACCAGGGTATGAACATCTGAACGAACCTCTTCATATTCTAGTGGAGGCAGAACTACCAGTTGAAATTATTGATACTCGTTTATTGCAAGCACGTGAGGTACTTGAAGATTTGCTCAGGCCTGTGGACGAATCTCAGGATTTTTACAAGAAACAGCAGCTGCGAGAGTTGGCAATGCTCAATGGCACACTTCGTGAGGAGGGTTCTCCAATGTCCGGTTCAGTGTCACCCTTCCACAACAGTCTTGGTATGAAGAGGGCCAAGACCAGGGGGTGA

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

No ontology terms assigned.

KEGG Pathways

Metabolic & Signaling

No pathways identified.

Pfam Domains

Protein Families

KH_1 STAR_dimer

Protein Analysis

300

Amino Acids

32.83

Weight (kDa)

8.96

Isoelectric Point (pI)

68.42

Instability Index

Protein Domains (Pfam)

Domain Name	Pfam ID	Position	E-value	Description
STAR_dimer	PF16544	44 - 83	5.8e-09	Homodimerisation region of STAR domain protein
KH-I_KHDC4-BBP	PF22675	160 - 247	1e-18	KHDC4/BBP-like, KH-domain type I

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

Style Settings

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Align Labels (Cladogram)

Image

Tree File

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Publication-ready

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Orthologous Genes (Group: OG0007994)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT4G26480 AT4G26480 AT4G26480 AT5G56140
fragaria_vesca	FvH4_3g41740 FvH4_3g41740 FvH4_3g41740 FvH4_3g41740
malus_domestica	MD03G1041400.v1.1 MD11G1042300.v1.1
prunus_persica	Prupe.6G033400_v2.0.a1 Prupe.6G033400_v2.0.a1
pyrus_communis	pycom03g03210
rosa_chinensis	RchiOBHm_Chr5g0074821
rosa_laevigata	RLG00000036508
rosa_multiflora	Rmu_sc0000909.1_g000002
rosa_roxburghii	Rroxscaffold_1G00006750
rosa_rugosa	Rorug05G0434500 Rorug05G0434600
rosa_samantha	Rh5AG492000 Rh5BG513400 Rh5CG537100 Rh5DG525500
rosa_wichuraiana	Rw5G045580

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AanI	TTATAA	1 cut(s)	492
AccB1I	GGYRCC	1 cut(s)	61
AccBSI	CCGCTC	1 cut(s)	113
AciI	CCGC	7 cut(s)	24, 96, 108, 111, 123, 505, 538
AclWI	GGATC	2 cut(s)	590, 603
AcvI	CACGTG	1 cut(s)	719
AdeI	CACNNNGTG	1 cut(s)	818
AfaI	GTAC	2 cut(s)	35, 726
AfiI	CCNNNNNNNGG	3 cut(s)	405, 839, 891
AflII	CTTAAG	1 cut(s)	533
AgsI	TTSAA	5 cut(s)	284, 321, 362, 689, 731
AjiI	CACGTC	1 cut(s)	581
AjnI	CCWGG	3 cut(s)	297, 628, 890
AjuI	GAANNNNNNNTTGG	2 cut(s)	826, 858
AluBI	AGCT	4 cut(s)	151, 172, 426, 784
AluI	AGCT	4 cut(s)	151, 172, 426, 784
AlwI	GGATC	2 cut(s)	590, 603
AlwNI	CAGNNNCTG	1 cut(s)	784
AoxI	GGCC	4 cut(s)	85, 514, 743, 882
ApeKI	GCWGC	4 cut(s)	151, 193, 781, 784
Asp700I	GAANNNNTTC	2 cut(s)	316, 654
AspS9I	GGNCC	2 cut(s)	515, 882
AsuC2I	CCSGG	1 cut(s)	458
AsuHPI	GGTGA	3 cut(s)	45, 68, 843
AsuNHI	GCTAGC	1 cut(s)	290
BamHI	GGATCC	1 cut(s)	595
BanI	GGYRCC	1 cut(s)	61
BbrPI	CACGTG	1 cut(s)	719
BbsI	GAAGAC	1 cut(s)	381
BbvI	GCAGC	4 cut(s)	138, 180, 771, 793
BccI	CCATC	1 cut(s)	339
BciT130I	CCWGG	3 cut(s)	299, 630, 892
BclI	TGATCA	1 cut(s)	570
BcnI	CCSGG	1 cut(s)	458
BfaI	CTAG	5 cut(s)	291, 306, 512, 519, 665
BfrI	CTTAAG	1 cut(s)	533
BisI	GCNGC	6 cut(s)	111, 123, 152, 194, 782, 785
BlsI	GCNGC	6 cut(s)	112, 124, 153, 195, 783, 786
Bme1390I	CCNGG	4 cut(s)	299, 458, 630, 892
BmgBI	CACGTC	1 cut(s)	581
BmgT120I	GGNCC	2 cut(s)	515, 882
BmiI	GGNNCC	2 cut(s)	63, 597
BmrFI	CCNGG	4 cut(s)	299, 458, 630, 892
BmsI	GCATC	2 cut(s)	311, 359
BmtI	GCTAGC	1 cut(s)	294
BpiI	GAAGAC	1 cut(s)	381
Bpu10I	CCTNAGC	1 cut(s)	740
BpuMI	CCSGG	1 cut(s)	458
BsaAI	YACGTR	1 cut(s)	719
BsaBI	GATNNNNATC	1 cut(s)	349
BsaJI	CCNNGG	3 cut(s)	297, 629, 891
BsaWI	WCCGGW	1 cut(s)	839
Bsc4I	CCNNNNNNNGG	3 cut(s)	405, 839, 891
Bse1I	ACTGG	4 cut(s)	188, 410, 470, 683
Bse3DI	GCAATG	1 cut(s)	804
Bse8I	GATNNNNATC	1 cut(s)	349
BseBI	CCWGG	3 cut(s)	299, 630, 892
BseDI	CCNNGG	3 cut(s)	297, 629, 891
BseGI	GGATG	1 cut(s)	350
BseJI	GATNNNNATC	1 cut(s)	349
BseLI	CCNNNNNNNGG	3 cut(s)	405, 839, 891
BseMI	GCAATG	1 cut(s)	804
BseMII	CTCAG	4 cut(s)	138, 401, 754, 773
BseNI	ACTGG	4 cut(s)	188, 410, 470, 683
BseRI	GAGGAG	3 cut(s)	91, 94, 836
BseXI	GCAGC	4 cut(s)	138, 180, 771, 793
BshFI	GGCC	4 cut(s)	87, 516, 745, 884
BshNI	GGYRCC	1 cut(s)	61
BsiSI	CCGG	3 cut(s)	84, 457, 840
BslFI	GGGAC	1 cut(s)	591
BslI	CCNNNNNNNGG	3 cut(s)	405, 839, 891
BsmFI	GGGAC	1 cut(s)	591
BsmI	GAATGC	1 cut(s)	259
BsnI	GGCC	4 cut(s)	87, 516, 745, 884
Bsp143I	GATC	2 cut(s)	570, 595
BspACI	CCGC	7 cut(s)	24, 96, 108, 111, 123, 505, 538
BspANI	GGCC	4 cut(s)	87, 516, 745, 884
BspCNI	CTCAG	4 cut(s)	139, 402, 753, 772
BspLI	GGNNCC	2 cut(s)	63, 597
BspOI	GCTAGC	1 cut(s)	294
BspPI	GGATC	2 cut(s)	590, 603
BspT107I	GGYRCC	1 cut(s)	61
BspTI	CTTAAG	1 cut(s)	533
BsrBI	CCGCTC	1 cut(s)	113
BsrDI	GCAATG	1 cut(s)	804
BsrI	ACTGG	4 cut(s)	188, 410, 470, 683
BssECI	CCNNGG	3 cut(s)	297, 629, 891
BssMI	GATC	2 cut(s)	570, 595
Bst2UI	CCWGG	3 cut(s)	299, 630, 892
Bst4CI	ACNGT	4 cut(s)	57, 246, 387, 866
Bst6I	CTCTTC	2 cut(s)	660, 872
BstAFI	CTTAAG	1 cut(s)	533
BstBAI	YACGTR	1 cut(s)	719
BstC8I	GCNNGC	3 cut(s)	161, 292, 714
BstDEI	CTNAG	5 cut(s)	147, 410, 603, 740, 759
BstF5I	GGATG	1 cut(s)	350
BstKTI	GATC	2 cut(s)	573, 598
BstMBI	GATC	2 cut(s)	570, 595
BstMWI	GCNNNNNNNGC	4 cut(s)	119, 160, 169, 193
BstNI	CCWGG	3 cut(s)	299, 630, 892
BstSCI	CCNGG	4 cut(s)	297, 456, 628, 890
BstV1I	GCAGC	4 cut(s)	138, 180, 771, 793
BstV2I	GAAGAC	1 cut(s)	381
BstX2I	RGATCY	1 cut(s)	595
BstYI	RGATCY	1 cut(s)	595
BsuRI	GGCC	4 cut(s)	87, 516, 745, 884
BtrI	CACGTC	1 cut(s)	581
BtsCI	GGATG	1 cut(s)	350
BtsIMutI	CAGTG	3 cut(s)	195, 242, 852
Cac8I	GCNNGC	3 cut(s)	161, 292, 714
CaiI	CAGNNNCTG	1 cut(s)	784
Cfr13I	GGNCC	2 cut(s)	515, 882
CseI	GACGC	2 cut(s)	152, 246
Csp6I	GTAC	2 cut(s)	34, 725
CspCI	CAANNNNNGTGG	2 cut(s)	441, 476
CviAII	CATG	1 cut(s)	37
CviQI	GTAC	2 cut(s)	34, 725
DdeI	CTNAG	5 cut(s)	147, 410, 603, 740, 759
DpnI	GATC	2 cut(s)	572, 597
DpnII	GATC	2 cut(s)	570, 595
DraIII	CACNNNGTG	1 cut(s)	818
Eam1104I	CTCTTC	2 cut(s)	660, 872
EarI	CTCTTC	2 cut(s)	660, 872
EciI	GGCGGA	2 cut(s)	85, 97
Eco147I	AGGCCT	1 cut(s)	745
Eco72I	CACGTG	1 cut(s)	719
EcoO109I	RGGNCCY	1 cut(s)	515
EcoRII	CCWGG	3 cut(s)	297, 628, 890
FaeI	CATG	1 cut(s)	40
FaiI	YATR	6 cut(s)	38, 492, 590, 636, 660, 875
FaqI	GGGAC	1 cut(s)	591
FatI	CATG	1 cut(s)	36
FauI	CCCGC	1 cut(s)	531
FbaI	TGATCA	1 cut(s)	570
Fnu4HI	GCNGC	6 cut(s)	111, 123, 152, 194, 782, 785
FokI	GGATG	1 cut(s)	357
Fsp4HI	GCNGC	6 cut(s)	111, 123, 152, 194, 782, 785
FspBI	CTAG	5 cut(s)	291, 306, 512, 519, 665
GluI	GCNGC	6 cut(s)	111, 123, 152, 194, 782, 785
HaeIII	GGCC	4 cut(s)	87, 516, 745, 884
HapII	CCGG	3 cut(s)	84, 457, 840
HgaI	GACGC	2 cut(s)	152, 246
Hin1II	CATG	1 cut(s)	40
HincII	GTYRAC	1 cut(s)	475
HindII	GTYRAC	1 cut(s)	475
HinfI	GANTC	2 cut(s)	412, 755
HpaII	CCGG	3 cut(s)	84, 457, 840
HphI	GGTGA	3 cut(s)	45, 68, 843
Hpy166II	GTNNAC	2 cut(s)	475, 751
Hpy188I	TCNGA	5 cut(s)	148, 367, 570, 600, 645
Hpy188III	TCNNGA	3 cut(s)	306, 761, 818
Hpy8I	GTNNAC	2 cut(s)	475, 751
Hpy99I	CGWCG	2 cut(s)	61, 122
HpyAV	CCTTC	4 cut(s)	24, 60, 98, 865
HpyCH4III	ACNGT	4 cut(s)	57, 246, 387, 866
HpyCH4IV	ACGT	3 cut(s)	355, 580, 718
HpyCH4V	TGCA	2 cut(s)	204, 712
HpyF10VI	GCNNNNNNNGC	4 cut(s)	119, 160, 169, 193
HpyF3I	CTNAG	5 cut(s)	147, 410, 603, 740, 759
HpySE526I	ACGT	3 cut(s)	355, 580, 718
Hsp92II	CATG	1 cut(s)	40
Ksp22I	TGATCA	1 cut(s)	570
Kzo9I	GATC	2 cut(s)	570, 595
LmnI	GCTCC	1 cut(s)	98
Lsp1109I	GCAGC	4 cut(s)	138, 180, 771, 793
LweI	GCATC	2 cut(s)	311, 359
MaeI	CTAG	5 cut(s)	291, 306, 512, 519, 665
MaeII	ACGT	3 cut(s)	355, 580, 718
MaeIII	GTNAC	5 cut(s)	164, 210, 235, 547, 849
MalI	GATC	2 cut(s)	572, 597
MbiI	CCGCTC	1 cut(s)	113
MboI	GATC	2 cut(s)	570, 595
MboII	GAAGA	5 cut(s)	381, 620, 647, 743, 889
MflI	RGATCY	1 cut(s)	595
MluCI	AATT	4 cut(s)	199, 438, 487, 690
MlyI	GAGTC	1 cut(s)	421
MmeI	TCCRAC	1 cut(s)	623
MroXI	GAANNNNTTC	2 cut(s)	316, 654
MseI	TTAA	1 cut(s)	534
MspA1I	CMGCKG	1 cut(s)	784
MspCI	CTTAAG	1 cut(s)	533
MspI	CCGG	3 cut(s)	84, 457, 840
MspR9I	CCNGG	4 cut(s)	299, 458, 630, 892
Mva1269I	GAATGC	1 cut(s)	259
MvaI	CCWGG	3 cut(s)	299, 630, 892
MwoI	GCNNNNNNNGC	4 cut(s)	119, 160, 169, 193
NciI	CCSGG	1 cut(s)	458
NdeII	GATC	2 cut(s)	570, 595
NheI	GCTAGC	1 cut(s)	290
NlaIII	CATG	1 cut(s)	40
NlaIV	GGNNCC	2 cut(s)	63, 597
NmeAIII	GCCGAG	1 cut(s)	151
NmuCI	GTSAC	3 cut(s)	164, 547, 849
PceI	AGGCCT	1 cut(s)	745
PcsI	WCGNNNNNNNCGW	2 cut(s)	53, 123
PctI	GAATGC	1 cut(s)	259
PdmI	GAANNNNTTC	2 cut(s)	316, 654
PfeI	GAWTC	1 cut(s)	755
PkrI	GCNGC	6 cut(s)	112, 124, 153, 195, 783, 786
PleI	GAGTC	1 cut(s)	420
PmaCI	CACGTG	1 cut(s)	719
PmlI	CACGTG	1 cut(s)	719
PpsI	GAGTC	1 cut(s)	420
Ppu21I	YACGTR	1 cut(s)	719
PsiI	TTATAA	1 cut(s)	492
Psp6I	CCWGG	3 cut(s)	297, 628, 890
PspCI	CACGTG	1 cut(s)	719
PspGI	CCWGG	3 cut(s)	297, 628, 890
PspN4I	GGNNCC	2 cut(s)	63, 597
PspPI	GGNCC	2 cut(s)	515, 882
PstNI	CAGNNNCTG	1 cut(s)	784
PsuI	RGATCY	1 cut(s)	595
PvuII	CAGCTG	1 cut(s)	784
RsaI	GTAC	2 cut(s)	35, 726
RsaNI	GTAC	2 cut(s)	34, 725
SaqAI	TTAA	1 cut(s)	534
SatI	GCNGC	6 cut(s)	111, 123, 152, 194, 782, 785
Sau3AI	GATC	2 cut(s)	570, 595
Sau96I	GGNCC	2 cut(s)	515, 882
SchI	GAGTC	1 cut(s)	421
ScrFI	CCNGG	4 cut(s)	299, 458, 630, 892
SfaNI	GCATC	2 cut(s)	311, 359
SmlI	CTYRAG	1 cut(s)	533
SmoI	CTYRAG	1 cut(s)	533
Sse9I	AATT	4 cut(s)	199, 438, 487, 690
SseBI	AGGCCT	1 cut(s)	745
SsiI	CCGC	7 cut(s)	24, 96, 108, 111, 123, 505, 538
SspI	AATATT	1 cut(s)	228
SspMI	CTAG	5 cut(s)	291, 306, 512, 519, 665
StuI	AGGCCT	1 cut(s)	745
StyD4I	CCNGG	4 cut(s)	297, 456, 628, 890
TaaI	ACNGT	4 cut(s)	57, 246, 387, 866
TaiI	ACGT	3 cut(s)	358, 583, 721
TasI	AATT	4 cut(s)	199, 438, 487, 690
TauI	GCSGC	2 cut(s)	113, 125
TfiI	GAWTC	1 cut(s)	755
Tru1I	TTAA	1 cut(s)	534
Tru9I	TTAA	1 cut(s)	534
TscAI	CASTG	3 cut(s)	195, 249, 852
TseFI	GTSAC	3 cut(s)	164, 547, 849
TseI	GCWGC	4 cut(s)	151, 193, 781, 784
Tsp45I	GTSAC	3 cut(s)	164, 547, 849
TspDTI	ATGAA	4 cut(s)	381, 647, 651, 890
TspRI	CASTG	3 cut(s)	195, 249, 852
Vha464I	CTTAAG	1 cut(s)	533
XbaI	TCTAGA	1 cut(s)	305
XcmI	CCANNNNNNNNNTGG	1 cut(s)	866
XmnI	GAANNNNTTC	2 cut(s)	316, 654
XspI	CTAG	5 cut(s)	291, 306, 512, 519, 665

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.