pycom03g03210

KH domain-containing protein

Basic Information

Type: gene
Biological Identity
pyrus_communis
Chr3
Physical Location & Seq
Forward (+)
2536142 .. 2540302
4161 bp
Loading structure...
UTR
Exon/CDS
Intron
pycom03g03210.7

Sequence Viewer

Length: 1173 bp
ATGATCCGAATCTTCAAGTTCGTCGGTTCCAGACAAAATTTCGGAGAGAATTTGAACTCAATTTATCACTTTATTTACCAAAAGAAAGAAACCACCGACGCTTGTAGACCTGGACTGAAAGAGATTTCAGAGAGAGAGAGATCTTCAGAGAGGGAGAGAGCGTCTGGTCGGGAATCGCGATCGGCTCGCCGGCCAGCCTCTGACCTACGCACACAGAGAGATCCCTCAGACGACCAGAAGAAGGAGGAGACGATTGGACGGCTGAGAGTCGCTATGGAAATGACGTCATCATCGGGCGGTGGAAGGTACATGGTGTACTCGCCGTCACCATCGGCACCTCACTCCCCTCACCTCTCCGGCCTTCGCTCCGCCTCCTCCTCCGCTGCTCTCGTTGCCGCCGAGCAAGAAAAATATGTATCTGAGCTGCTTGGGGAGCGTCTCAAGCTGAGTCCATTTTTGCCTGTGCTGCCGCATTGCAACAGGTTACTAAACCAAGAAATATTGCGTGTAACTACACTGTTGGGGAATGCGTCAGTTTTAGGTCAAAATGGGCTTGAACATGCTAGCCCCCTGGCATCTAGAGGAATGTTTCCAAATGGAGGTGCTGATGTGAACGGATGGGCATCACGGTTTCAATCAGAAATGTCAGGTTTATTACAGTCTTCATCAACCCAAAACTGGCTGAGTTCTCAGAGTAGTTCATCTGGTCTGATTGTGAAGCGAACAATCCGGGTTGATATTCCAGTTGACAAATATCCTAATTTTAACTTTGTTGGGCGGTTGCTAGGCCCTAGGGGAAACTCTCTTAAGCGGGTGGAAGCAACTACTGAATGTCGTGTTCTGATCAGGGGACGTGGTAGCATAAAGGATCCAACTAGGGAAGAAATGATGAGAGGAAAACCAGGGTATGAACATCTGAACGAACCTCTTCATATTCTAGTGGAGGCAGAGCTACCTGTTGAAATTATTGATGCTCGTTTATTACAAGCACGTGAGGTACTTGAAGATTTGCTCAGGCCTGTGGACGAATCTCAGGATTTCTACAAGAAACAGCAGCTGCGAGAGTTGGCAATGCTGAATGGCACACTTCGTGAAGAGGGTTCTCCAATGTCCGGTTCGTTGTCACCCTTCCGCAACAGTCTTGGTATGAAGAGGGCCAAGACCAGGGGGTAA
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
No ontology terms assigned.
KEGG Pathways
Metabolic & Signaling
No pathways identified.
Pfam Domains
Protein Families

Protein Analysis

391

Amino Acids

43.49

Weight (kDa)

9.62

Isoelectric Point (pI)

60.77

Instability Index
Protein Domains (Pfam)
No Pfam domains detected for this protein.
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
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Publication-ready

Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AatII GACGTC 1 cut(s) 287
AccB1I GGYRCC 1 cut(s) 334
AccI GTMKAC 1 cut(s) 106
AccII CGCG 1 cut(s) 178
AciI CCGC 8 cut(s) 297, 369, 381, 396, 470, 778, 811, 1132
AclWI GGATC 3 cut(s) 215, 863, 876
AcoI YGGCCR 1 cut(s) 191
AcsI RAATTY 2 cut(s) 37, 49
AcuI CTGAAG 1 cut(s) 129
AcvI CACGTG 1 cut(s) 992
AcyI GRCGYC 1 cut(s) 284
AdeI CACNNNGTG 1 cut(s) 1091
AfaI GTAC 3 cut(s) 308, 317, 999
AfiI CCNNNNNNNGG 5 cut(s) 241, 599, 678, 1112, 1164
AflII CTTAAG 1 cut(s) 806
AgsI TTSAA 6 cut(s) 16, 55, 557, 635, 962, 1004
AjiI CACGTC 1 cut(s) 854
AjnI CCWGG 4 cut(s) 109, 570, 901, 1163
AjuI GAANNNNNNNTTGG 2 cut(s) 1099, 1131
AluBI AGCT 4 cut(s) 424, 445, 952, 1057
AluI AGCT 4 cut(s) 424, 445, 952, 1057
Alw26I GTCTC 2 cut(s) 242, 443
AlwI GGATC 3 cut(s) 215, 863, 876
AlwNI CAGNNNCTG 2 cut(s) 200, 1057
AoxI GGCC 5 cut(s) 191, 358, 787, 1016, 1155
ApeKI GCWGC 5 cut(s) 383, 424, 466, 1054, 1057
ApoI RAATTY 2 cut(s) 37, 49
Asp700I GAANNNNTTC 1 cut(s) 927
AspA2I CCTAGG 1 cut(s) 791
AspS9I GGNCC 2 cut(s) 788, 1155
AsuC2I CCSGG 1 cut(s) 731
AsuHPI GGTGA 3 cut(s) 318, 341, 1116
AsuNHI GCTAGC 1 cut(s) 563
AvrII CCTAGG 1 cut(s) 791
BamHI GGATCC 1 cut(s) 868
BanI GGYRCC 1 cut(s) 334
BbrPI CACGTG 1 cut(s) 992
BbsI GAAGAC 1 cut(s) 654
BbvI GCAGC 5 cut(s) 370, 411, 453, 1044, 1066
BccI CCATC 2 cut(s) 337, 612
BceAI ACGGC 2 cut(s) 275, 307
BciT130I CCWGG 4 cut(s) 111, 572, 903, 1165
BclI TGATCA 1 cut(s) 843
BcnI CCSGG 1 cut(s) 731
BcoDI GTCTC 2 cut(s) 242, 443
BfaI CTAG 6 cut(s) 564, 579, 785, 792, 876, 938
BfrI CTTAAG 1 cut(s) 806
BglII AGATCT 1 cut(s) 140
BisI GCNGC 7 cut(s) 384, 396, 425, 467, 470, 1055, 1058
BlnI CCTAGG 1 cut(s) 791
BlsI GCNGC 7 cut(s) 385, 397, 426, 468, 471, 1056, 1059
Bme1390I CCNGG 5 cut(s) 111, 572, 731, 903, 1165
BmgBI CACGTC 1 cut(s) 854
BmgT120I GGNCC 2 cut(s) 788, 1155
BmiI GGNNCC 3 cut(s) 28, 336, 870
BmrFI CCNGG 5 cut(s) 111, 572, 731, 903, 1165
BmsI GCATC 3 cut(s) 584, 632, 961
BmtI GCTAGC 1 cut(s) 567
BpiI GAAGAC 1 cut(s) 654
Bpu10I CCTNAGC 1 cut(s) 1013
BpuEI CTTGAG 1 cut(s) 425
BpuMI CCSGG 1 cut(s) 731
BsaAI YACGTR 1 cut(s) 992
BsaBI GATNNNNATC 2 cut(s) 8, 622
BsaHI GRCGYC 1 cut(s) 284
BsaJI CCNNGG 4 cut(s) 570, 791, 902, 1164
BsaWI WCCGGW 1 cut(s) 1112
BsaXI ACNNNNNCTCC 2 cut(s) 146, 176
Bsc4I CCNNNNNNNGG 5 cut(s) 241, 599, 678, 1112, 1164
Bse118I RCCGGY 1 cut(s) 189
Bse1I ACTGG 2 cut(s) 683, 743
Bse3DI GCAATG 2 cut(s) 472, 1077
Bse8I GATNNNNATC 2 cut(s) 8, 622
BseBI CCWGG 4 cut(s) 111, 572, 903, 1165
BseDI CCNNGG 4 cut(s) 570, 791, 902, 1164
BseGI GGATG 1 cut(s) 623
BseJI GATNNNNATC 2 cut(s) 8, 622
BseLI CCNNNNNNNGG 5 cut(s) 241, 599, 678, 1112, 1164
BseMI GCAATG 2 cut(s) 472, 1077
BseMII CTCAG 8 cut(s) 240, 254, 411, 437, 674, 704, 1027, 1046
BseNI ACTGG 2 cut(s) 683, 743
BseRI GAGGAG 3 cut(s) 260, 364, 367
BseXI GCAGC 5 cut(s) 370, 411, 453, 1044, 1066
Bsh1236I CGCG 1 cut(s) 178
Bsh1285I CGRYCG 1 cut(s) 182
BshFI GGCC 5 cut(s) 193, 360, 789, 1018, 1157
BshNI GGYRCC 1 cut(s) 334
BsiEI CGRYCG 1 cut(s) 182
BsiSI CCGG 4 cut(s) 190, 357, 730, 1113
BslFI GGGAC 1 cut(s) 864
BslI CCNNNNNNNGG 5 cut(s) 241, 599, 678, 1112, 1164
BsmAI GTCTC 2 cut(s) 242, 443
BsmBI CGTCTC 2 cut(s) 242, 443
BsmFI GGGAC 1 cut(s) 864
BsmI GAATGC 1 cut(s) 532
BsnI GGCC 5 cut(s) 193, 360, 789, 1018, 1157
Bsp143I GATC 6 cut(s) 3, 140, 179, 220, 843, 868
Bsp68I TCGCGA 1 cut(s) 178
BspACI CCGC 8 cut(s) 297, 369, 381, 396, 470, 778, 811, 1132
BspANI GGCC 5 cut(s) 193, 360, 789, 1018, 1157
BspCNI CTCAG 8 cut(s) 239, 255, 412, 438, 675, 703, 1026, 1045
BspFNI CGCG 1 cut(s) 178
BspLI GGNNCC 3 cut(s) 28, 336, 870
BspOI GCTAGC 1 cut(s) 567
BspPI GGATC 3 cut(s) 215, 863, 876
BspT107I GGYRCC 1 cut(s) 334
BspTI CTTAAG 1 cut(s) 806
BsrDI GCAATG 2 cut(s) 472, 1077
BsrFI RCCGGY 1 cut(s) 189
BsrI ACTGG 2 cut(s) 683, 743
BssAI RCCGGY 1 cut(s) 189
BssECI CCNNGG 4 cut(s) 570, 791, 902, 1164
BssMI GATC 6 cut(s) 3, 140, 179, 220, 843, 868
BssNI GRCGYC 1 cut(s) 284
BssT1I CCWWGG 1 cut(s) 791
Bst2UI CCWGG 4 cut(s) 111, 572, 903, 1165
Bst4CI ACNGT 4 cut(s) 519, 630, 660, 1139
Bst6I CTCTTC 3 cut(s) 933, 1089, 1145
BstACI GRCGYC 1 cut(s) 284
BstAFI CTTAAG 1 cut(s) 806
BstBAI YACGTR 1 cut(s) 992
BstC8I GCNNGC 4 cut(s) 187, 191, 195, 565
BstDEI CTNAG 8 cut(s) 226, 263, 420, 446, 683, 690, 1013, 1032
BstF5I GGATG 1 cut(s) 623
BstFNI CGCG 1 cut(s) 178
BstKTI GATC 6 cut(s) 6, 143, 182, 223, 846, 871
BstMAI GTCTC 2 cut(s) 242, 443
BstMBI GATC 6 cut(s) 3, 140, 179, 220, 843, 868
BstMCI CGRYCG 1 cut(s) 182
BstMWI GCNNNNNNNGC 4 cut(s) 392, 433, 442, 466
BstNI CCWGG 4 cut(s) 111, 572, 903, 1165
BstNSI RCATGY 1 cut(s) 563
BstSCI CCNGG 5 cut(s) 109, 570, 729, 901, 1163
BstUI CGCG 1 cut(s) 178
BstV1I GCAGC 5 cut(s) 370, 411, 453, 1044, 1066
BstV2I GAAGAC 1 cut(s) 654
BstX2I RGATCY 3 cut(s) 140, 220, 868
BstYI RGATCY 3 cut(s) 140, 220, 868
BsuRI GGCC 5 cut(s) 193, 360, 789, 1018, 1157
BtrI CACGTC 1 cut(s) 854
BtsCI GGATG 1 cut(s) 623
BtsIMutI CAGTG 1 cut(s) 515
BtuMI TCGCGA 1 cut(s) 178
Cac8I GCNNGC 4 cut(s) 187, 191, 195, 565
CaiI CAGNNNCTG 2 cut(s) 200, 1057
Cfr10I RCCGGY 1 cut(s) 189
Cfr13I GGNCC 2 cut(s) 788, 1155
CseI GACGC 4 cut(s) 107, 150, 425, 519
Csp6I GTAC 3 cut(s) 307, 316, 998
CviAII CATG 2 cut(s) 310, 560
CviQI GTAC 3 cut(s) 307, 316, 998
DdeI CTNAG 8 cut(s) 226, 263, 420, 446, 683, 690, 1013, 1032
DpnI GATC 6 cut(s) 5, 142, 181, 222, 845, 870
DpnII GATC 6 cut(s) 3, 140, 179, 220, 843, 868
DraIII CACNNNGTG 1 cut(s) 1091
EaeI YGGCCR 1 cut(s) 191
Eam1104I CTCTTC 3 cut(s) 933, 1089, 1145
EarI CTCTTC 3 cut(s) 933, 1089, 1145
EciI GGCGGA 1 cut(s) 358
Eco130I CCWWGG 1 cut(s) 791
Eco147I AGGCCT 1 cut(s) 1018
Eco57I CTGAAG 1 cut(s) 129
Eco72I CACGTG 1 cut(s) 992
EcoO109I RGGNCCY 1 cut(s) 788
EcoRII CCWGG 4 cut(s) 109, 570, 901, 1163
EcoT14I CCWWGG 1 cut(s) 791
ErhI CCWWGG 1 cut(s) 791
Esp3I CGTCTC 2 cut(s) 242, 443
FaeI CATG 2 cut(s) 313, 563
FaiI YATR 8 cut(s) 275, 311, 414, 561, 863, 909, 933, 1148
FaqI GGGAC 1 cut(s) 864
FatI CATG 2 cut(s) 309, 559
FauI CCCGC 1 cut(s) 804
FbaI TGATCA 1 cut(s) 843
FblI GTMKAC 1 cut(s) 106
Fnu4HI GCNGC 7 cut(s) 384, 396, 425, 467, 470, 1055, 1058
FokI GGATG 1 cut(s) 630
Fsp4HI GCNGC 7 cut(s) 384, 396, 425, 467, 470, 1055, 1058
FspBI CTAG 6 cut(s) 564, 579, 785, 792, 876, 938
GluI GCNGC 7 cut(s) 384, 396, 425, 467, 470, 1055, 1058
HaeIII GGCC 5 cut(s) 193, 360, 789, 1018, 1157
HapII CCGG 4 cut(s) 190, 357, 730, 1113
HgaI GACGC 4 cut(s) 107, 150, 425, 519
Hin1I GRCGYC 1 cut(s) 284
Hin1II CATG 2 cut(s) 313, 563
HincII GTYRAC 1 cut(s) 748
HindII GTYRAC 1 cut(s) 748
HinfI GANTC 5 cut(s) 9, 173, 267, 448, 1028
HpaII CCGG 4 cut(s) 190, 357, 730, 1113
HphI GGTGA 3 cut(s) 318, 341, 1116
Hpy166II GTNNAC 5 cut(s) 107, 316, 613, 748, 1024
Hpy188III TCNNGA 6 cut(s) 30, 170, 177, 579, 1034, 1091
Hpy8I GTNNAC 5 cut(s) 107, 316, 613, 748, 1024
Hpy99I CGWCG 2 cut(s) 26, 101
HpyAV CCTTC 4 cut(s) 235, 297, 371, 1138
HpyCH4III ACNGT 4 cut(s) 519, 630, 660, 1139
HpyCH4IV ACGT 3 cut(s) 284, 853, 991
HpyCH4V TGCA 1 cut(s) 477
HpyF10VI GCNNNNNNNGC 4 cut(s) 392, 433, 442, 466
HpyF3I CTNAG 8 cut(s) 226, 263, 420, 446, 683, 690, 1013, 1032
HpySE526I ACGT 3 cut(s) 284, 853, 991
Hsp92I GRCGYC 1 cut(s) 284
Hsp92II CATG 2 cut(s) 313, 563
KroI GCCGGC 1 cut(s) 189
KroNI GCCGGC 1 cut(s) 191
Ksp22I TGATCA 1 cut(s) 843
Kzo9I GATC 6 cut(s) 3, 140, 179, 220, 843, 868
LmnI GCTCC 2 cut(s) 371, 433
Lsp1109I GCAGC 5 cut(s) 370, 411, 453, 1044, 1066
LweI GCATC 3 cut(s) 584, 632, 961
MaeI CTAG 6 cut(s) 564, 579, 785, 792, 876, 938
MaeII ACGT 3 cut(s) 284, 853, 991
MaeIII GTNAC 4 cut(s) 324, 483, 508, 1122
MalI GATC 6 cut(s) 5, 142, 181, 222, 845, 870
MboI GATC 6 cut(s) 3, 140, 179, 220, 843, 868
MboII GAAGA 9 cut(s) 4, 135, 250, 654, 893, 920, 1016, 1106, 1162
MflI RGATCY 3 cut(s) 140, 220, 868
MluCI AATT 5 cut(s) 37, 49, 60, 760, 963
MlyI GAGTC 2 cut(s) 276, 457
MmeI TCCRAC 1 cut(s) 896
MroNI GCCGGC 1 cut(s) 189
MroXI GAANNNNTTC 1 cut(s) 927
MseI TTAA 2 cut(s) 765, 807
MspA1I CMGCKG 2 cut(s) 383, 1057
MspCI CTTAAG 1 cut(s) 806
MspI CCGG 4 cut(s) 190, 357, 730, 1113
MspR9I CCNGG 5 cut(s) 111, 572, 731, 903, 1165
Mva1269I GAATGC 1 cut(s) 532
MvaI CCWGG 4 cut(s) 111, 572, 903, 1165
MvnI CGCG 1 cut(s) 178
MwoI GCNNNNNNNGC 4 cut(s) 392, 433, 442, 466
NaeI GCCGGC 1 cut(s) 191
NciI CCSGG 1 cut(s) 731
NdeII GATC 6 cut(s) 3, 140, 179, 220, 843, 868
NgoMIV GCCGGC 1 cut(s) 189
NheI GCTAGC 1 cut(s) 563
NlaIII CATG 2 cut(s) 313, 563
NlaIV GGNNCC 3 cut(s) 28, 336, 870
NmeAIII GCCGAG 1 cut(s) 424
NmuCI GTSAC 2 cut(s) 324, 1122
NruI TCGCGA 1 cut(s) 178
NspI RCATGY 1 cut(s) 563
PceI AGGCCT 1 cut(s) 1018
PcsI WCGNNNNNNNCGW 2 cut(s) 175, 396
PctI GAATGC 1 cut(s) 532
PdiI GCCGGC 1 cut(s) 191
PdmI GAANNNNTTC 1 cut(s) 927
PfeI GAWTC 3 cut(s) 9, 173, 1028
PkrI GCNGC 7 cut(s) 385, 397, 426, 468, 471, 1056, 1059
Ple19I CGATCG 1 cut(s) 182
PleI GAGTC 2 cut(s) 275, 456
PmaCI CACGTG 1 cut(s) 992
PmlI CACGTG 1 cut(s) 992
PpsI GAGTC 2 cut(s) 275, 456
Ppu21I YACGTR 1 cut(s) 992
Psp6I CCWGG 4 cut(s) 109, 570, 901, 1163
PspCI CACGTG 1 cut(s) 992
PspGI CCWGG 4 cut(s) 109, 570, 901, 1163
PspN4I GGNNCC 3 cut(s) 28, 336, 870
PspPI GGNCC 2 cut(s) 788, 1155
PstNI CAGNNNCTG 2 cut(s) 200, 1057
PsuI RGATCY 3 cut(s) 140, 220, 868
PvuI CGATCG 1 cut(s) 182
PvuII CAGCTG 1 cut(s) 1057
RruI TCGCGA 1 cut(s) 178
RsaI GTAC 3 cut(s) 308, 317, 999
RsaNI GTAC 3 cut(s) 307, 316, 998
SaqAI TTAA 2 cut(s) 765, 807
SatI GCNGC 7 cut(s) 384, 396, 425, 467, 470, 1055, 1058
Sau3AI GATC 6 cut(s) 3, 140, 179, 220, 843, 868
Sau96I GGNCC 2 cut(s) 788, 1155
SchI GAGTC 2 cut(s) 276, 457
ScrFI CCNGG 5 cut(s) 111, 572, 731, 903, 1165
SfaNI GCATC 3 cut(s) 584, 632, 961
SmlI CTYRAG 2 cut(s) 440, 806
SmoI CTYRAG 2 cut(s) 440, 806
Sse9I AATT 5 cut(s) 37, 49, 60, 760, 963
SseBI AGGCCT 1 cut(s) 1018
SsiI CCGC 8 cut(s) 297, 369, 381, 396, 470, 778, 811, 1132
SspI AATATT 1 cut(s) 501
SspMI CTAG 6 cut(s) 564, 579, 785, 792, 876, 938
StuI AGGCCT 1 cut(s) 1018
StyD4I CCNGG 5 cut(s) 109, 570, 729, 901, 1163
StyI CCWWGG 1 cut(s) 791
TaaI ACNGT 4 cut(s) 519, 630, 660, 1139
TaiI ACGT 3 cut(s) 287, 856, 994
TasI AATT 5 cut(s) 37, 49, 60, 760, 963
TatI WGTACW 1 cut(s) 315
TauI GCSGC 2 cut(s) 398, 472
TfiI GAWTC 3 cut(s) 9, 173, 1028
Tru1I TTAA 2 cut(s) 765, 807
Tru9I TTAA 2 cut(s) 765, 807
TscAI CASTG 1 cut(s) 522
TseFI GTSAC 2 cut(s) 324, 1122
TseI GCWGC 5 cut(s) 383, 424, 466, 1054, 1057
Tsp45I GTSAC 2 cut(s) 324, 1122
TspDTI ATGAA 5 cut(s) 654, 690, 920, 924, 1163
TspGWI ACGGA 1 cut(s) 630
TspRI CASTG 1 cut(s) 522
Vha464I CTTAAG 1 cut(s) 806
XapI RAATTY 2 cut(s) 37, 49
XbaI TCTAGA 1 cut(s) 578
XceI RCATGY 1 cut(s) 563
XmaJI CCTAGG 1 cut(s) 791
XmiI GTMKAC 1 cut(s) 106
XmnI GAANNNNTTC 1 cut(s) 927
XspI CTAG 6 cut(s) 564, 579, 785, 792, 876, 938
ZraI GACGTC 1 cut(s) 285
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.