Basic Information

Type: gene

Biological Identity

Species

rosa_roxburghii

Chromosome

GWHEROQ00000001

Orthogroup ID

OG0007994

Physical Location & Seq

Genomic Coordinates Forward (+)

8757086 .. 8761880

Gene Structure 4795 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

Rroxscaffold_1G00006750.1

Sequence Viewer

CDS Protein Promoter (2k)

Length: 897 bp

ATGACATCATCATCAGGCGTTGGTGGAAGGTACATGGCTTACTCGCCCTCGCCGTCGGCCCCTCTCTCTCCTCACCTCTCCGGCCTTCGGTCCGTCTCCTCTTCCGCCGCTCTCGTCGCCGAGCAAGAAAAATACCTGTCTGAGCTAGTCGGGGAGCGTCAGAAGCTCGGTCCATTCCTGCCTGTGCTGCCAAATTGCTGCAGGTTGTTGAACCAAGAAATATTGCGTGTAACTACACTGTTGGGGAATGCATCAGTTTTAGGTCAAAGTGGACTTGAACATGCTAGCCCCCTGGCTTCTGGAGGAATGTTTTCAAATGGAGGTGCCGATATGAACGGATGGGCATCACGGTTTCAATCAGAAATGTCAAGTTTATTACAGCCCTCATCAACACAAAATTGGCTTAGCCCTCAAAGTAGCTCATCTGGTCTAATTGTTAAGCGGACAATCAGAGTGGATATTCCCGTTGACAAATATCCTAATTATAACTTTGTTGGGCGGTTGCTAGGTCCTAGGGGGAACTCTCTTAAGCGAGTGGAAGCAACTACTGAGTGCCGTGTTCTGATCAGGGGCCGTGGTAGCATAAAGGATCCAACCAGGGAAGATATGATGAGAGGTAAACCAGGGTATGAACATTTGAATGAACCTCTTCATATACTAGTGGAGGCAGAACTACCAGTTGAAATTGTTGATGCTCGTTTATTACAAGCACGTGAAGTACTTGAAGATCTGCTCAGGCCTGTGGATGAATCTCAAGATTTCTACAAGAAGCAGCAGCTGCGAGAGTTGGCAATGCTCAATGGTACACTTCGTGATGAGGGTTCTCCCATGTCGGGTTCTGTGTCACCCTTCAACAACAGTCTTGGTGGTATGAAGAGGGCAAAGACCAGGGGGTAG

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

No ontology terms assigned.

KEGG Pathways

Metabolic & Signaling

No pathways identified.

Pfam Domains

Protein Families

KH_1 STAR_dimer

Protein Analysis

298

Amino Acids

32.45

Weight (kDa)

8.97

Isoelectric Point (pI)

61.22

Instability Index

Protein Domains (Pfam)

Domain Name	Pfam ID	Position	E-value	Description
STAR_dimer	PF16544	42 - 81	9.3e-08	Homodimerisation region of STAR domain protein
KH-I_KHDC4-BBP	PF22675	158 - 245	3.3e-19	KHDC4/BBP-like, KH-domain type I

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

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Align Labels (Cladogram)

Image

Tree File

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Publication-ready

iTOL Interactive Tree Of Life · Most popular EvolView Flexible annotations MEGA Desktop phylogenetics suite FigTree Desktop tree editor

Orthologous Genes (Group: OG0007994)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT4G26480 AT4G26480 AT4G26480 AT5G56140
fragaria_vesca	FvH4_3g41740 FvH4_3g41740 FvH4_3g41740 FvH4_3g41740
malus_domestica	MD03G1041400.v1.1 MD11G1042300.v1.1
prunus_persica	Prupe.6G033400_v2.0.a1 Prupe.6G033400_v2.0.a1
pyrus_communis	pycom03g03210
rosa_chinensis	RchiOBHm_Chr5g0074821
rosa_laevigata	RLG00000036508
rosa_multiflora	Rmu_sc0000909.1_g000002
rosa_roxburghii	Rroxscaffold_1G00006750
rosa_rugosa	Rorug05G0434500 Rorug05G0434600
rosa_samantha	Rh5AG492000 Rh5BG513400 Rh5CG537100 Rh5DG525500
rosa_wichuraiana	Rw5G045580

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AanI	TTATAA	1 cut(s)	486
Acc36I	ACCTGC	1 cut(s)	192
AccB1I	GGYRCC	1 cut(s)	323
AccBSI	CCGCTC	1 cut(s)	110
AciI	CCGC	4 cut(s)	105, 108, 442, 499
AclWI	GGATC	2 cut(s)	584, 597
AcvI	CACGTG	1 cut(s)	713
AdeI	CACNNNGTG	1 cut(s)	812
AfaI	GTAC	3 cut(s)	32, 720, 805
AfiI	CCNNNNNNNGG	2 cut(s)	87, 833
AflII	CTTAAG	1 cut(s)	527
AgsI	TTSAA	8 cut(s)	211, 278, 315, 356, 640, 683, 725, 853
AhlI	ACTAGT	1 cut(s)	658
AjnI	CCWGG	4 cut(s)	291, 596, 622, 887
AluBI	AGCT	4 cut(s)	145, 166, 420, 778
AluI	AGCT	4 cut(s)	145, 166, 420, 778
Alw26I	GTCTC	1 cut(s)	100
AlwI	GGATC	2 cut(s)	584, 597
AlwNI	CAGNNNCTG	1 cut(s)	778
AoxI	GGCC	4 cut(s)	57, 82, 571, 737
ApeKI	GCWGC	5 cut(s)	187, 198, 772, 775, 778
Asp700I	GAANNNNTTC	2 cut(s)	310, 648
AspA2I	CCTAGG	1 cut(s)	512
AspS9I	GGNCC	5 cut(s)	58, 90, 170, 509, 571
AsuHPI	GGTGA	2 cut(s)	65, 837
AsuNHI	GCTAGC	1 cut(s)	284
AvaII	GGWCC	3 cut(s)	90, 170, 509
AvrII	CCTAGG	1 cut(s)	512
BamHI	GGATCC	1 cut(s)	589
BanI	GGYRCC	1 cut(s)	323
BbrPI	CACGTG	1 cut(s)	713
BbvI	GCAGC	5 cut(s)	174, 185, 765, 784, 787
BccI	CCATC	1 cut(s)	333
BceAI	ACGGC	3 cut(s)	37, 540, 558
BciT130I	CCWGG	4 cut(s)	293, 598, 624, 889
BclI	TGATCA	1 cut(s)	564
BcoDI	GTCTC	1 cut(s)	100
BcuI	ACTAGT	1 cut(s)	658
BfaI	CTAG	5 cut(s)	146, 285, 506, 513, 659
BfmI	CTRYAG	1 cut(s)	199
BfrI	CTTAAG	1 cut(s)	527
BfuAI	ACCTGC	1 cut(s)	192
BglII	AGATCT	1 cut(s)	727
BisI	GCNGC	6 cut(s)	108, 188, 199, 773, 776, 779
BlnI	CCTAGG	1 cut(s)	512
BlpI	GCTNAGC	1 cut(s)	404
BlsI	GCNGC	6 cut(s)	109, 189, 200, 774, 777, 780
BmcAI	AGTACT	1 cut(s)	720
Bme1390I	CCNGG	4 cut(s)	293, 598, 624, 889
Bme18I	GGWCC	3 cut(s)	90, 170, 509
BmgT120I	GGNCC	5 cut(s)	58, 90, 170, 509, 571
BmiI	GGNNCC	4 cut(s)	60, 325, 572, 591
BmrFI	CCNGG	4 cut(s)	293, 598, 624, 889
BmsI	GCATC	3 cut(s)	260, 353, 682
BmtI	GCTAGC	1 cut(s)	288
BpmI	CTGGAG	1 cut(s)	321
Bpu10I	CCTNAGC	1 cut(s)	734
Bpu1102I	GCTNAGC	1 cut(s)	404
BpuEI	CTTGAG	1 cut(s)	738
BsaAI	YACGTR	1 cut(s)	713
BsaBI	GATNNNNATC	1 cut(s)	343
BsaJI	CCNNGG	6 cut(s)	291, 512, 574, 597, 623, 888
Bsc4I	CCNNNNNNNGG	2 cut(s)	87, 833
Bse1I	ACTGG	1 cut(s)	677
Bse3DI	GCAATG	1 cut(s)	798
Bse8I	GATNNNNATC	1 cut(s)	343
BseBI	CCWGG	4 cut(s)	293, 598, 624, 889
BseDI	CCNNGG	6 cut(s)	291, 512, 574, 597, 623, 888
BseGI	GGATG	2 cut(s)	344, 751
BseJI	GATNNNNATC	1 cut(s)	343
BseLI	CCNNNNNNNGG	2 cut(s)	87, 833
BseMI	GCAATG	1 cut(s)	798
BseMII	CTCAG	3 cut(s)	132, 540, 748
BseNI	ACTGG	1 cut(s)	677
BseRI	GAGGAG	2 cut(s)	60, 88
BseXI	GCAGC	5 cut(s)	174, 185, 765, 784, 787
BshFI	GGCC	4 cut(s)	59, 84, 573, 739
BshNI	GGYRCC	1 cut(s)	323
BsiSI	CCGG	1 cut(s)	81
BslI	CCNNNNNNNGG	2 cut(s)	87, 833
BsmAI	GTCTC	1 cut(s)	100
BsmBI	CGTCTC	1 cut(s)	100
BsmI	GAATGC	1 cut(s)	253
BsnI	GGCC	4 cut(s)	59, 84, 573, 739
Bsp143I	GATC	3 cut(s)	564, 589, 727
Bsp1720I	GCTNAGC	1 cut(s)	404
BspACI	CCGC	4 cut(s)	105, 108, 442, 499
BspANI	GGCC	4 cut(s)	59, 84, 573, 739
BspCNI	CTCAG	3 cut(s)	133, 541, 747
BspLI	GGNNCC	4 cut(s)	60, 325, 572, 591
BspMAI	CTGCAG	1 cut(s)	203
BspMI	ACCTGC	1 cut(s)	192
BspOI	GCTAGC	1 cut(s)	288
BspPI	GGATC	2 cut(s)	584, 597
BspT107I	GGYRCC	1 cut(s)	323
BspTI	CTTAAG	1 cut(s)	527
BsrBI	CCGCTC	1 cut(s)	110
BsrDI	GCAATG	1 cut(s)	798
BsrI	ACTGG	1 cut(s)	677
BssECI	CCNNGG	6 cut(s)	291, 512, 574, 597, 623, 888
BssMI	GATC	3 cut(s)	564, 589, 727
BssT1I	CCWWGG	1 cut(s)	512
Bst2UI	CCWGG	4 cut(s)	293, 598, 624, 889
Bst4CI	ACNGT	3 cut(s)	240, 351, 860
Bst6I	CTCTTC	3 cut(s)	106, 654, 869
BstAFI	CTTAAG	1 cut(s)	527
BstAPI	GCANNNNNTGC	1 cut(s)	778
BstBAI	YACGTR	1 cut(s)	713
BstC8I	GCNNGC	1 cut(s)	286
BstDEI	CTNAG	4 cut(s)	141, 404, 549, 734
BstDSI	CCRYGG	1 cut(s)	574
BstF5I	GGATG	2 cut(s)	344, 751
BstKTI	GATC	3 cut(s)	567, 592, 730
BstMAI	GTCTC	1 cut(s)	100
BstMBI	GATC	3 cut(s)	564, 589, 727
BstMWI	GCNNNNNNNGC	5 cut(s)	116, 163, 187, 579, 778
BstNI	CCWGG	4 cut(s)	293, 598, 624, 889
BstNSI	RCATGY	1 cut(s)	284
BstSCI	CCNGG	4 cut(s)	291, 596, 622, 887
BstSFI	CTRYAG	1 cut(s)	199
BstV1I	GCAGC	5 cut(s)	174, 185, 765, 784, 787
BstX2I	RGATCY	2 cut(s)	589, 727
BstYI	RGATCY	2 cut(s)	589, 727
BsuRI	GGCC	4 cut(s)	59, 84, 573, 739
BtgI	CCRYGG	1 cut(s)	574
BtsCI	GGATG	2 cut(s)	344, 751
BtsIMutI	CAGTG	1 cut(s)	236
BveI	ACCTGC	1 cut(s)	192
Cac8I	GCNNGC	1 cut(s)	286
CaiI	CAGNNNCTG	1 cut(s)	778
Cfr13I	GGNCC	5 cut(s)	58, 90, 170, 509, 571
CpoI	CGGWCCG	1 cut(s)	90
CseI	GACGC	1 cut(s)	146
Csp6I	GTAC	3 cut(s)	31, 719, 804
CspCI	CAANNNNNGTGG	2 cut(s)	435, 470
CspI	CGGWCCG	1 cut(s)	90
CviAII	CATG	3 cut(s)	34, 281, 829
CviQI	GTAC	3 cut(s)	31, 719, 804
DdeI	CTNAG	4 cut(s)	141, 404, 549, 734
DpnI	GATC	3 cut(s)	566, 591, 729
DpnII	GATC	3 cut(s)	564, 589, 727
DraIII	CACNNNGTG	1 cut(s)	812
Eam1104I	CTCTTC	3 cut(s)	106, 654, 869
EarI	CTCTTC	3 cut(s)	106, 654, 869
EciI	GGCGGA	1 cut(s)	94
Eco130I	CCWWGG	1 cut(s)	512
Eco147I	AGGCCT	1 cut(s)	739
Eco47I	GGWCC	3 cut(s)	90, 170, 509
Eco72I	CACGTG	1 cut(s)	713
EcoO109I	RGGNCCY	1 cut(s)	509
EcoRII	CCWGG	4 cut(s)	291, 596, 622, 887
EcoT14I	CCWWGG	1 cut(s)	512
EcoT22I	ATGCAT	1 cut(s)	253
ErhI	CCWWGG	1 cut(s)	512
Esp3I	CGTCTC	1 cut(s)	100
FaeI	CATG	3 cut(s)	37, 284, 832
FatI	CATG	3 cut(s)	33, 280, 828
FbaI	TGATCA	1 cut(s)	564
Fnu4HI	GCNGC	6 cut(s)	108, 188, 199, 773, 776, 779
FokI	GGATG	2 cut(s)	351, 758
Fsp4HI	GCNGC	6 cut(s)	108, 188, 199, 773, 776, 779
FspBI	CTAG	5 cut(s)	146, 285, 506, 513, 659
GluI	GCNGC	6 cut(s)	108, 188, 199, 773, 776, 779
GsuI	CTGGAG	1 cut(s)	321
HaeIII	GGCC	4 cut(s)	59, 84, 573, 739
HapII	CCGG	1 cut(s)	81
HgaI	GACGC	1 cut(s)	146
Hin1II	CATG	3 cut(s)	37, 284, 832
HincII	GTYRAC	1 cut(s)	469
HindII	GTYRAC	1 cut(s)	469
HinfI	GANTC	1 cut(s)	749
HpaII	CCGG	1 cut(s)	81
HphI	GGTGA	2 cut(s)	65, 837
Hpy166II	GTNNAC	4 cut(s)	272, 469, 620, 806
Hpy188I	TCNGA	5 cut(s)	142, 162, 361, 452, 564
Hpy188III	TCNNGA	3 cut(s)	300, 755, 812
Hpy8I	GTNNAC	4 cut(s)	272, 469, 620, 806
Hpy99I	CGWCG	2 cut(s)	58, 119
HpyAV	CCTTC	3 cut(s)	21, 95, 859
HpyCH4III	ACNGT	3 cut(s)	240, 351, 860
HpyCH4IV	ACGT	1 cut(s)	712
HpyCH4V	TGCA	2 cut(s)	201, 251
HpyF10VI	GCNNNNNNNGC	5 cut(s)	116, 163, 187, 579, 778
HpyF3I	CTNAG	4 cut(s)	141, 404, 549, 734
HpySE526I	ACGT	1 cut(s)	712
Hsp92II	CATG	3 cut(s)	37, 284, 832
Ksp22I	TGATCA	1 cut(s)	564
Kzo9I	GATC	3 cut(s)	564, 589, 727
LmnI	GCTCC	1 cut(s)	154
Lsp1109I	GCAGC	5 cut(s)	174, 185, 765, 784, 787
LweI	GCATC	3 cut(s)	260, 353, 682
MaeI	CTAG	5 cut(s)	146, 285, 506, 513, 659
MaeII	ACGT	1 cut(s)	712
MaeIII	GTNAC	2 cut(s)	229, 843
MalI	GATC	3 cut(s)	566, 591, 729
MbiI	CCGCTC	1 cut(s)	110
MboI	GATC	3 cut(s)	564, 589, 727
MboII	GAAGA	5 cut(s)	93, 614, 641, 737, 886
MflI	RGATCY	2 cut(s)	589, 727
MluCI	AATT	5 cut(s)	193, 397, 432, 481, 684
MmeI	TCCRAC	1 cut(s)	617
Mph1103I	ATGCAT	1 cut(s)	253
MroXI	GAANNNNTTC	2 cut(s)	310, 648
MseI	TTAA	2 cut(s)	438, 528
MslI	CAYNNNNRTG	1 cut(s)	639
MspA1I	CMGCKG	1 cut(s)	778
MspCI	CTTAAG	1 cut(s)	527
MspI	CCGG	1 cut(s)	81
MspR9I	CCNGG	4 cut(s)	293, 598, 624, 889
Mva1269I	GAATGC	1 cut(s)	253
MvaI	CCWGG	4 cut(s)	293, 598, 624, 889
MwoI	GCNNNNNNNGC	5 cut(s)	116, 163, 187, 579, 778
NdeII	GATC	3 cut(s)	564, 589, 727
NheI	GCTAGC	1 cut(s)	284
NlaIII	CATG	3 cut(s)	37, 284, 832
NlaIV	GGNNCC	4 cut(s)	60, 325, 572, 591
NmeAIII	GCCGAG	1 cut(s)	145
NmuCI	GTSAC	1 cut(s)	843
NsiI	ATGCAT	1 cut(s)	253
NspI	RCATGY	1 cut(s)	284
PceI	AGGCCT	1 cut(s)	739
PcsI	WCGNNNNNNNCGW	1 cut(s)	50
PctI	GAATGC	1 cut(s)	253
PdmI	GAANNNNTTC	2 cut(s)	310, 648
PfeI	GAWTC	1 cut(s)	749
PkrI	GCNGC	6 cut(s)	109, 189, 200, 774, 777, 780
PmaCI	CACGTG	1 cut(s)	713
PmlI	CACGTG	1 cut(s)	713
Ppu21I	YACGTR	1 cut(s)	713
PpuMI	RGGWCCY	1 cut(s)	509
PsiI	TTATAA	1 cut(s)	486
Psp5II	RGGWCCY	1 cut(s)	509
Psp6I	CCWGG	4 cut(s)	291, 596, 622, 887
PspCI	CACGTG	1 cut(s)	713
PspGI	CCWGG	4 cut(s)	291, 596, 622, 887
PspN4I	GGNNCC	4 cut(s)	60, 325, 572, 591
PspPI	GGNCC	5 cut(s)	58, 90, 170, 509, 571
PspPPI	RGGWCCY	1 cut(s)	509
PstI	CTGCAG	1 cut(s)	203
PstNI	CAGNNNCTG	1 cut(s)	778
PsuI	RGATCY	2 cut(s)	589, 727
PvuII	CAGCTG	1 cut(s)	778
RsaI	GTAC	3 cut(s)	32, 720, 805
RsaNI	GTAC	3 cut(s)	31, 719, 804
RseI	CAYNNNNRTG	1 cut(s)	639
Rsr2I	CGGWCCG	1 cut(s)	90
RsrII	CGGWCCG	1 cut(s)	90
SaqAI	TTAA	2 cut(s)	438, 528
SatI	GCNGC	6 cut(s)	108, 188, 199, 773, 776, 779
Sau3AI	GATC	3 cut(s)	564, 589, 727
Sau96I	GGNCC	5 cut(s)	58, 90, 170, 509, 571
ScaI	AGTACT	1 cut(s)	720
ScrFI	CCNGG	4 cut(s)	293, 598, 624, 889
SfaNI	GCATC	3 cut(s)	260, 353, 682
SfcI	CTRYAG	1 cut(s)	199
SinI	GGWCC	3 cut(s)	90, 170, 509
SmiMI	CAYNNNNRTG	1 cut(s)	639
SmlI	CTYRAG	2 cut(s)	527, 753
SmoI	CTYRAG	2 cut(s)	527, 753
SpeI	ACTAGT	1 cut(s)	658
Sse9I	AATT	5 cut(s)	193, 397, 432, 481, 684
SseBI	AGGCCT	1 cut(s)	739
SsiI	CCGC	4 cut(s)	105, 108, 442, 499
SspI	AATATT	1 cut(s)	222
SspMI	CTAG	5 cut(s)	146, 285, 506, 513, 659
StuI	AGGCCT	1 cut(s)	739
StyD4I	CCNGG	4 cut(s)	291, 596, 622, 887
StyI	CCWWGG	1 cut(s)	512
TaaI	ACNGT	3 cut(s)	240, 351, 860
TaiI	ACGT	1 cut(s)	715
TaqII	GACCGA	2 cut(s)	78, 158
TasI	AATT	5 cut(s)	193, 397, 432, 481, 684
TatI	WGTACW	1 cut(s)	718
TauI	GCSGC	1 cut(s)	110
TfiI	GAWTC	1 cut(s)	749
Tru1I	TTAA	2 cut(s)	438, 528
Tru9I	TTAA	2 cut(s)	438, 528
TscAI	CASTG	1 cut(s)	243
TseFI	GTSAC	1 cut(s)	843
TseI	GCWGC	5 cut(s)	187, 198, 772, 775, 778
Tsp45I	GTSAC	1 cut(s)	843
TspDTI	ATGAA	6 cut(s)	347, 641, 645, 657, 762, 887
TspGWI	ACGGA	2 cut(s)	82, 351
TspRI	CASTG	1 cut(s)	243
Vha464I	CTTAAG	1 cut(s)	527
VpaK11BI	GGWCC	3 cut(s)	90, 170, 509
XceI	RCATGY	1 cut(s)	284
XmaJI	CCTAGG	1 cut(s)	512
XmnI	GAANNNNTTC	2 cut(s)	310, 648
XspI	CTAG	5 cut(s)	146, 285, 506, 513, 659
ZrmI	AGTACT	1 cut(s)	720
Zsp2I	ATGCAT	1 cut(s)	253

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.