Basic Information

Type: gene

Biological Identity

Species

prunus_persica

Chromosome

Pp06

Orthogroup ID

OG0007994

Physical Location & Seq

Genomic Coordinates Forward (+)

2545404 .. 2550248

Gene Structure 4845 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

Prupe.6G033400.1

Sequence Viewer

CDS Protein Promoter (2k)

Length: 921 bp

ATGACGTCATCATCGGGCGGTGGAAGGTATATGTCGTACTCGCCGTCGCCGTCGGCACCTCACTCTCCTCACCTCTCCGGCCTTCGCTCCGCCTCATCCGCAGCTCTCGTCGCCGCCGAGCAAGAAAAATATCTATCTGAATTACTTGCGGAGCGCCACAAACTCGGTCCATTTTTGCCTTTGCTACCGCATTGCTGCAGGTTAATAAACCAAGAAATATTGCGTGTAACTACACTGTTGGGGAATGCATCAGTTTTAGGTCAAAGTGGGCTTGAACATGCTAGCCCCCTGGCTTCTGGAGGAATGTTTTCAAATGGAGGTGCTGATGTGAACGGATGGGCTTCACGGTTTCAATCAGAAGTTTTAACGTACTTGGATTCCACTGCCCAGATGTCAGGTTTATTACAGCCTTCATCAACACAAAACTGGCTTAATTCTCCAAGTAGCTCATCTGGTCTAATTGTTAAGCGAACAATCCGAGTGGATATTCCAGTGGACAAATATCCTAATTATAACTTTGTTGGACGGTTGTTGGGCCCTAGGGGGAACTCTCTTAAACGAGTGGAAGCAACTACTGAGTGCCGTGTTCTGATTAGGGGCCGTGGTAGCATAAAGGATCCGACGAGGGAAGAAATGATGAGAGGAAAGCCAGGGTATGAACATTTGAACGAGCCTCTTCATATTCTGGTGGAGGCAGAACTACCAGTTGAAATTATTGATGCTCGTTTATCACAAGCACGTGAGGTACTTGAAGATTTACTCAGGCCTGTGGATGAGTCTCAGGATTTCTACAAGAAACAGCAGCTGCGAGAGTTGGCAATGCTCAATGGTACACTTCGTGAAGAGGGTTCTCCAATGTCTGGTTCTGTGTCACCCTTCCACAACAGTCTTGGTATGAAGAGGGCCAAAACCAGGGGGTAG

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

No ontology terms assigned.

KEGG Pathways

Metabolic & Signaling

No pathways identified.

Pfam Domains

Protein Families

KH_1 STAR_dimer

Protein Analysis

307

Amino Acids

33.42

Weight (kDa)

8.73

Isoelectric Point (pI)

62.5

Instability Index

Protein Domains (Pfam)

No Pfam domains detected for this protein.

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

Style Settings

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Align Labels (Cladogram)

Image

Tree File

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Publication-ready

iTOL Interactive Tree Of Life · Most popular EvolView Flexible annotations MEGA Desktop phylogenetics suite FigTree Desktop tree editor

Orthologous Genes (Group: OG0007994)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT4G26480 AT4G26480 AT4G26480 AT5G56140
fragaria_vesca	FvH4_3g41740 FvH4_3g41740 FvH4_3g41740 FvH4_3g41740
malus_domestica	MD03G1041400.v1.1 MD11G1042300.v1.1
prunus_persica	Prupe.6G033400_v2.0.a1 Prupe.6G033400_v2.0.a1
pyrus_communis	pycom03g03210
rosa_chinensis	RchiOBHm_Chr5g0074821
rosa_laevigata	RLG00000036508
rosa_multiflora	Rmu_sc0000909.1_g000002
rosa_roxburghii	Rroxscaffold_1G00006750
rosa_rugosa	Rorug05G0434500 Rorug05G0434600
rosa_samantha	Rh5AG492000 Rh5BG513400 Rh5CG537100 Rh5DG525500
rosa_wichuraiana	Rw5G045580

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AanI	TTATAA	1 cut(s)	513
AatII	GACGTC	1 cut(s)	8
Acc36I	ACCTGC	1 cut(s)	189
AccB1I	GGYRCC	1 cut(s)	55
AccB7I	CCANNNNNTGG	1 cut(s)	860
AciI	CCGC	6 cut(s)	18, 90, 99, 114, 149, 188
AclWI	GGATC	2 cut(s)	611, 624
AcvI	CACGTG	1 cut(s)	740
AcyI	GRCGYC	1 cut(s)	5
AdeI	CACNNNGTG	1 cut(s)	839
AfaI	GTAC	4 cut(s)	38, 371, 747, 832
AfiI	CCNNNNNNNGG	2 cut(s)	860, 912
AgsI	TTSAA	6 cut(s)	275, 312, 353, 667, 710, 752
AjnI	CCWGG	3 cut(s)	288, 649, 911
AjuI	GAANNNNNNNTTGG	2 cut(s)	847, 879
AluBI	AGCT	3 cut(s)	104, 447, 805
AluI	AGCT	3 cut(s)	104, 447, 805
Alw26I	GTCTC	1 cut(s)	783
AlwI	GGATC	2 cut(s)	611, 624
AlwNI	CAGNNNCTG	1 cut(s)	805
AoxI	GGCC	5 cut(s)	79, 535, 598, 764, 903
ApaI	GGGCCC	1 cut(s)	539
ApeKI	GCWGC	4 cut(s)	101, 195, 802, 805
Asp700I	GAANNNNTTC	1 cut(s)	307
AspA2I	CCTAGG	1 cut(s)	539
AspLEI	GCGC	1 cut(s)	156
AspS9I	GGNCC	5 cut(s)	167, 535, 536, 598, 903
AsuHPI	GGTGA	2 cut(s)	62, 864
AsuNHI	GCTAGC	1 cut(s)	281
AvaII	GGWCC	1 cut(s)	167
AvrII	CCTAGG	1 cut(s)	539
BaeGI	GKGCMC	1 cut(s)	539
BamHI	GGATCC	1 cut(s)	616
BanI	GGYRCC	1 cut(s)	55
BanII	GRGCYC	1 cut(s)	539
BbrPI	CACGTG	1 cut(s)	740
BbvI	GCAGC	4 cut(s)	113, 182, 792, 814
BccI	CCATC	1 cut(s)	330
BceAI	ACGGC	4 cut(s)	28, 34, 567, 585
BciT130I	CCWGG	3 cut(s)	290, 651, 913
BcoDI	GTCTC	1 cut(s)	783
BfaI	CTAG	2 cut(s)	282, 540
BfmI	CTRYAG	1 cut(s)	196
BfoI	RGCGCY	1 cut(s)	157
BfuAI	ACCTGC	1 cut(s)	189
BisI	GCNGC	5 cut(s)	102, 114, 196, 803, 806
BlnI	CCTAGG	1 cut(s)	539
BlsI	GCNGC	5 cut(s)	103, 115, 197, 804, 807
Bme1390I	CCNGG	3 cut(s)	290, 651, 913
Bme18I	GGWCC	1 cut(s)	167
BmgT120I	GGNCC	5 cut(s)	167, 535, 536, 598, 903
BmiI	GGNNCC	4 cut(s)	57, 537, 599, 618
BmrFI	CCNGG	3 cut(s)	290, 651, 913
BmsI	GCATC	2 cut(s)	257, 709
BmtI	GCTAGC	1 cut(s)	285
BpmI	CTGGAG	1 cut(s)	318
BsaAI	YACGTR	1 cut(s)	740
BsaHI	GRCGYC	1 cut(s)	5
BsaJI	CCNNGG	5 cut(s)	288, 539, 601, 650, 912
Bsc4I	CCNNNNNNNGG	2 cut(s)	860, 912
Bse1I	ACTGG	3 cut(s)	431, 491, 704
Bse3DI	GCAATG	2 cut(s)	190, 825
BseBI	CCWGG	3 cut(s)	290, 651, 913
BseDI	CCNNGG	5 cut(s)	288, 539, 601, 650, 912
BseGI	GGATG	3 cut(s)	95, 341, 778
BseLI	CCNNNNNNNGG	2 cut(s)	860, 912
BseMI	GCAATG	2 cut(s)	190, 825
BseMII	CTCAG	3 cut(s)	567, 775, 794
BseNI	ACTGG	3 cut(s)	431, 491, 704
BseRI	GAGGAG	1 cut(s)	57
BseSI	GKGCMC	1 cut(s)	539
BseXI	GCAGC	4 cut(s)	113, 182, 792, 814
BshFI	GGCC	5 cut(s)	81, 537, 600, 766, 905
BshNI	GGYRCC	1 cut(s)	55
BsiSI	CCGG	1 cut(s)	78
BslI	CCNNNNNNNGG	2 cut(s)	860, 912
BsmAI	GTCTC	1 cut(s)	783
BsmI	GAATGC	1 cut(s)	250
BsnI	GGCC	5 cut(s)	81, 537, 600, 766, 905
Bsp120I	GGGCCC	1 cut(s)	535
Bsp1286I	GDGCHC	1 cut(s)	539
Bsp143I	GATC	1 cut(s)	616
BspACI	CCGC	6 cut(s)	18, 90, 99, 114, 149, 188
BspANI	GGCC	5 cut(s)	81, 537, 600, 766, 905
BspCNI	CTCAG	3 cut(s)	568, 774, 793
BspLI	GGNNCC	4 cut(s)	57, 537, 599, 618
BspMAI	CTGCAG	1 cut(s)	200
BspMI	ACCTGC	1 cut(s)	189
BspOI	GCTAGC	1 cut(s)	285
BspPI	GGATC	2 cut(s)	611, 624
BspT107I	GGYRCC	1 cut(s)	55
BsrDI	GCAATG	2 cut(s)	190, 825
BsrI	ACTGG	3 cut(s)	431, 491, 704
BssECI	CCNNGG	5 cut(s)	288, 539, 601, 650, 912
BssMI	GATC	1 cut(s)	616
BssNI	GRCGYC	1 cut(s)	5
BssT1I	CCWWGG	1 cut(s)	539
Bst2UI	CCWGG	3 cut(s)	290, 651, 913
Bst4CI	ACNGT	4 cut(s)	237, 348, 528, 887
Bst6I	CTCTTC	3 cut(s)	681, 837, 893
BstACI	GRCGYC	1 cut(s)	5
BstBAI	YACGTR	1 cut(s)	740
BstC8I	GCNNGC	1 cut(s)	283
BstDEI	CTNAG	3 cut(s)	576, 761, 780
BstDSI	CCRYGG	1 cut(s)	601
BstF5I	GGATG	3 cut(s)	95, 341, 778
BstH2I	RGCGCY	1 cut(s)	157
BstHHI	GCGC	1 cut(s)	156
BstKTI	GATC	1 cut(s)	619
BstMAI	GTCTC	1 cut(s)	783
BstMBI	GATC	1 cut(s)	616
BstMWI	GCNNNNNNNGC	3 cut(s)	98, 110, 606
BstNI	CCWGG	3 cut(s)	290, 651, 913
BstNSI	RCATGY	1 cut(s)	281
BstSCI	CCNGG	3 cut(s)	288, 649, 911
BstSFI	CTRYAG	1 cut(s)	196
BstSLI	GKGCMC	1 cut(s)	539
BstV1I	GCAGC	4 cut(s)	113, 182, 792, 814
BstX2I	RGATCY	1 cut(s)	616
BstYI	RGATCY	1 cut(s)	616
BsuRI	GGCC	5 cut(s)	81, 537, 600, 766, 905
BtgI	CCRYGG	1 cut(s)	601
BtsCI	GGATG	3 cut(s)	95, 341, 778
BtsI	GCAGTG	1 cut(s)	381
BtsIMutI	CAGTG	3 cut(s)	233, 381, 498
BveI	ACCTGC	1 cut(s)	189
Cac8I	GCNNGC	1 cut(s)	283
CaiI	CAGNNNCTG	1 cut(s)	805
CfoI	GCGC	1 cut(s)	156
Cfr13I	GGNCC	5 cut(s)	167, 535, 536, 598, 903
Csp6I	GTAC	4 cut(s)	37, 370, 746, 831
CspCI	CAANNNNNGTGG	2 cut(s)	462, 497
CviAII	CATG	1 cut(s)	278
CviQI	GTAC	4 cut(s)	37, 370, 746, 831
DdeI	CTNAG	3 cut(s)	576, 761, 780
DpnI	GATC	1 cut(s)	618
DpnII	GATC	1 cut(s)	616
DraIII	CACNNNGTG	1 cut(s)	839
Eam1104I	CTCTTC	3 cut(s)	681, 837, 893
EarI	CTCTTC	3 cut(s)	681, 837, 893
EciI	GGCGGA	1 cut(s)	79
Eco130I	CCWWGG	1 cut(s)	539
Eco147I	AGGCCT	1 cut(s)	766
Eco24I	GRGCYC	1 cut(s)	539
Eco47I	GGWCC	1 cut(s)	167
Eco72I	CACGTG	1 cut(s)	740
EcoO109I	RGGNCCY	1 cut(s)	536
EcoRII	CCWGG	3 cut(s)	288, 649, 911
EcoT14I	CCWWGG	1 cut(s)	539
EcoT22I	ATGCAT	1 cut(s)	250
EcoT38I	GRGCYC	1 cut(s)	539
ErhI	CCWWGG	1 cut(s)	539
FaeI	CATG	1 cut(s)	281
FaiI	YATR	8 cut(s)	30, 32, 279, 513, 611, 657, 681, 896
FatI	CATG	1 cut(s)	277
Fnu4HI	GCNGC	5 cut(s)	102, 114, 196, 803, 806
FokI	GGATG	3 cut(s)	82, 348, 785
FriOI	GRGCYC	1 cut(s)	539
Fsp4HI	GCNGC	5 cut(s)	102, 114, 196, 803, 806
FspBI	CTAG	2 cut(s)	282, 540
GlaI	GCGC	1 cut(s)	155
GluI	GCNGC	5 cut(s)	102, 114, 196, 803, 806
GsuI	CTGGAG	1 cut(s)	318
HaeII	RGCGCY	1 cut(s)	157
HaeIII	GGCC	5 cut(s)	81, 537, 600, 766, 905
HapII	CCGG	1 cut(s)	78
HhaI	GCGC	1 cut(s)	156
Hin1I	GRCGYC	1 cut(s)	5
Hin1II	CATG	1 cut(s)	281
Hin6I	GCGC	1 cut(s)	154
HinP1I	GCGC	1 cut(s)	154
HinfI	GANTC	2 cut(s)	377, 776
HpaII	CCGG	1 cut(s)	78
HphI	GGTGA	2 cut(s)	62, 864
Hpy166II	GTNNAC	3 cut(s)	331, 496, 833
Hpy188I	TCNGA	5 cut(s)	139, 358, 479, 591, 621
Hpy188III	TCNNGA	3 cut(s)	297, 782, 839
Hpy8I	GTNNAC	3 cut(s)	331, 496, 833
Hpy99I	CGWCG	4 cut(s)	49, 55, 113, 625
HpyAV	CCTTC	4 cut(s)	18, 92, 420, 886
HpyCH4III	ACNGT	4 cut(s)	237, 348, 528, 887
HpyCH4IV	ACGT	3 cut(s)	5, 368, 739
HpyCH4V	TGCA	2 cut(s)	198, 248
HpyF10VI	GCNNNNNNNGC	3 cut(s)	98, 110, 606
HpyF3I	CTNAG	3 cut(s)	576, 761, 780
HpySE526I	ACGT	3 cut(s)	5, 368, 739
Hsp92I	GRCGYC	1 cut(s)	5
Hsp92II	CATG	1 cut(s)	281
HspAI	GCGC	1 cut(s)	154
Kzo9I	GATC	1 cut(s)	616
LmnI	GCTCC	2 cut(s)	92, 151
Lsp1109I	GCAGC	4 cut(s)	113, 182, 792, 814
LweI	GCATC	2 cut(s)	257, 709
MaeI	CTAG	2 cut(s)	282, 540
MaeII	ACGT	3 cut(s)	5, 368, 739
MaeIII	GTNAC	2 cut(s)	226, 870
MalI	GATC	1 cut(s)	618
MboI	GATC	1 cut(s)	616
MboII	GAAGA	5 cut(s)	641, 668, 764, 854, 910
MflI	RGATCY	1 cut(s)	616
MhlI	GDGCHC	1 cut(s)	539
MluCI	AATT	5 cut(s)	140, 433, 459, 508, 711
MlyI	GAGTC	1 cut(s)	785
MmeI	TCCRAC	2 cut(s)	502, 644
Mph1103I	ATGCAT	1 cut(s)	250
MroXI	GAANNNNTTC	1 cut(s)	307
MseI	TTAA	5 cut(s)	203, 365, 432, 465, 555
MspA1I	CMGCKG	1 cut(s)	805
MspI	CCGG	1 cut(s)	78
MspR9I	CCNGG	3 cut(s)	290, 651, 913
Mva1269I	GAATGC	1 cut(s)	250
MvaI	CCWGG	3 cut(s)	290, 651, 913
MwoI	GCNNNNNNNGC	3 cut(s)	98, 110, 606
NdeII	GATC	1 cut(s)	616
NheI	GCTAGC	1 cut(s)	281
NlaIII	CATG	1 cut(s)	281
NlaIV	GGNNCC	4 cut(s)	57, 537, 599, 618
NmeAIII	GCCGAG	1 cut(s)	142
NmuCI	GTSAC	1 cut(s)	870
NsiI	ATGCAT	1 cut(s)	250
NspI	RCATGY	1 cut(s)	281
PceI	AGGCCT	1 cut(s)	766
PcsI	WCGNNNNNNNCGW	3 cut(s)	41, 47, 114
PctI	GAATGC	1 cut(s)	250
PdmI	GAANNNNTTC	1 cut(s)	307
PfeI	GAWTC	1 cut(s)	377
PflMI	CCANNNNNTGG	1 cut(s)	860
PkrI	GCNGC	5 cut(s)	103, 115, 197, 804, 807
PleI	GAGTC	1 cut(s)	784
PmaCI	CACGTG	1 cut(s)	740
PmlI	CACGTG	1 cut(s)	740
PpsI	GAGTC	1 cut(s)	784
Ppu21I	YACGTR	1 cut(s)	740
PsiI	TTATAA	1 cut(s)	513
Psp6I	CCWGG	3 cut(s)	288, 649, 911
PspCI	CACGTG	1 cut(s)	740
PspGI	CCWGG	3 cut(s)	288, 649, 911
PspN4I	GGNNCC	4 cut(s)	57, 537, 599, 618
PspOMI	GGGCCC	1 cut(s)	535
PspPI	GGNCC	5 cut(s)	167, 535, 536, 598, 903
PstI	CTGCAG	1 cut(s)	200
PstNI	CAGNNNCTG	1 cut(s)	805
PsuI	RGATCY	1 cut(s)	616
PvuII	CAGCTG	1 cut(s)	805
RsaI	GTAC	4 cut(s)	38, 371, 747, 832
RsaNI	GTAC	4 cut(s)	37, 370, 746, 831
SaqAI	TTAA	5 cut(s)	203, 365, 432, 465, 555
SatI	GCNGC	5 cut(s)	102, 114, 196, 803, 806
Sau3AI	GATC	1 cut(s)	616
Sau96I	GGNCC	5 cut(s)	167, 535, 536, 598, 903
SchI	GAGTC	1 cut(s)	785
ScrFI	CCNGG	3 cut(s)	290, 651, 913
SduI	GDGCHC	1 cut(s)	539
SfaNI	GCATC	2 cut(s)	257, 709
SfcI	CTRYAG	1 cut(s)	196
SinI	GGWCC	1 cut(s)	167
Sse9I	AATT	5 cut(s)	140, 433, 459, 508, 711
SseBI	AGGCCT	1 cut(s)	766
SsiI	CCGC	6 cut(s)	18, 90, 99, 114, 149, 188
SspI	AATATT	1 cut(s)	219
SspMI	CTAG	2 cut(s)	282, 540
StuI	AGGCCT	1 cut(s)	766
StyD4I	CCNGG	3 cut(s)	288, 649, 911
StyI	CCWWGG	1 cut(s)	539
TaaI	ACNGT	4 cut(s)	237, 348, 528, 887
TaiI	ACGT	3 cut(s)	8, 371, 742
TaqII	GACCGA	1 cut(s)	155
TasI	AATT	5 cut(s)	140, 433, 459, 508, 711
TauI	GCSGC	1 cut(s)	116
TfiI	GAWTC	1 cut(s)	377
Tru1I	TTAA	5 cut(s)	203, 365, 432, 465, 555
Tru9I	TTAA	5 cut(s)	203, 365, 432, 465, 555
TscAI	CASTG	3 cut(s)	240, 388, 498
TseFI	GTSAC	1 cut(s)	870
TseI	GCWGC	4 cut(s)	101, 195, 802, 805
Tsp45I	GTSAC	1 cut(s)	870
TspDTI	ATGAA	4 cut(s)	402, 668, 672, 911
TspGWI	ACGGA	1 cut(s)	348
TspRI	CASTG	3 cut(s)	240, 388, 498
Van91I	CCANNNNNTGG	1 cut(s)	860
VpaK11BI	GGWCC	1 cut(s)	167
XceI	RCATGY	1 cut(s)	281
XcmI	CCANNNNNNNNNTGG	1 cut(s)	887
XmaJI	CCTAGG	1 cut(s)	539
XmnI	GAANNNNTTC	1 cut(s)	307
XspI	CTAG	2 cut(s)	282, 540
ZraI	GACGTC	1 cut(s)	6
Zsp2I	ATGCAT	1 cut(s)	250

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.