Basic Information

Type: gene

Biological Identity

Species

fragaria_vesca

Chromosome

Fvb3

Orthogroup ID

OG0007994

Physical Location & Seq

Genomic Coordinates Reverse (-)

34996450 .. 35001355

Gene Structure 4906 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

FvH4_3g41740.t3

Sequence Viewer

CDS Protein Promoter (2k)

Length: 855 bp

ATGACATCATCATCAGGCGTTGGTGGAAGGTACATGGCTTACTCGCCGTCGCTGTCGGCGCCTCTCTCCCCTCACATCTCCGGCCTCCGCTCCTCCTCCGCCGCCGCTCTCGTCGCCGAGCAAGAAAAATATCTATCGGAGCTGCTCGGGGAGCGTCACAAGCTCGGTCCATTTCTTCCTGTGCTGCCGAATTGCTTCAGGTTGTTGAACCAAGTTTTAGGTCAAAGTGGACTTGAACATGCTAGCCCCCTGGCTTCTGGAGGAATGTTTTCAAATGGAGGTGCCGATATGGACGGATGGGCAACACGGTTTCAATCAGAAATGTCAACTTTATTACAGCCCCCGCCAACACAAAATTGGCATGGTTCTCAAGGTAGCTCATCTGGTCTAATTGTTAAACGGACAATCAGAGTGGATATTCCTGTTGACAAATATCCTACTTATAACTTTGTTGGGCGGTTGCTAGGTCCTAGAGGGAACTCTCTTAAGCGAGTGGAAGCAACTACTGAGTGCCGTGTTCTGATCAGGGGCCGTGGTAGCATAAAGGATCCAGCCAGGGAAGATATGATGAGAGGTAAACCAGGGTATGAACATTTGAATGAACCCCTTCATATACTTGTGGAGGCAGAACTACCAGTTGAAATTATCGATGCTCGTTTATTGCAAGCGCGTGAAGTTCTTGAAGATCTGCTCAGGCCTGTGGATGAATCTCAAGATTTCTACAAGAAGCAGCAGCTGCGAGAATTGGCAATGCTCAATGGTACACTTCGTGATGAGGGTTCTCCCATGTCTGGTTCTGTGTCACCCTTCAACAACAGTCTCGGTGGTATGAAGAGGGCAAAGACCAGAGGGTAG

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

No ontology terms assigned.

KEGG Pathways

Metabolic & Signaling

No pathways identified.

Pfam Domains

Protein Families

KH_1 STAR_dimer

Protein Analysis

285

Amino Acids

31.03

Weight (kDa)

8.85

Isoelectric Point (pI)

58.76

Instability Index

Protein Domains (Pfam)

Domain Name	Pfam ID	Position	E-value	Description
STAR_dimer	PF16544	41 - 80	6.4e-08	Homodimerisation region of STAR domain protein
KH-I_KHDC4-BBP	PF22675	157 - 244	7.8e-19	KHDC4/BBP-like, KH-domain type I

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

Style Settings

Font Size (px)

Line Width

Align Labels (Cladogram)

Image

Tree File

Tip: Beautify your tree with professional tools

Download the Full Tree (.nwk) file, then upload it to any of the following tools to customize colors, fonts, annotations, clades, and branch support.

Publication-ready

iTOL Interactive Tree Of Life · Most popular EvolView Flexible annotations MEGA Desktop phylogenetics suite FigTree Desktop tree editor

Orthologous Genes (Group: OG0007994)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT4G26480 AT4G26480 AT4G26480 AT5G56140
fragaria_vesca	FvH4_3g41740 FvH4_3g41740 FvH4_3g41740 FvH4_3g41740
malus_domestica	MD03G1041400.v1.1 MD11G1042300.v1.1
prunus_persica	Prupe.6G033400_v2.0.a1 Prupe.6G033400_v2.0.a1
pyrus_communis	pycom03g03210
rosa_chinensis	RchiOBHm_Chr5g0074821
rosa_laevigata	RLG00000036508
rosa_multiflora	Rmu_sc0000909.1_g000002
rosa_roxburghii	Rroxscaffold_1G00006750
rosa_rugosa	Rorug05G0434500 Rorug05G0434600
rosa_samantha	Rh5AG492000 Rh5BG513400 Rh5CG537100 Rh5DG525500
rosa_wichuraiana	Rw5G045580

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AanI	TTATAA	1 cut(s)	444
AccB1I	GGYRCC	2 cut(s)	58, 281
AccBSI	CCGCTC	2 cut(s)	90, 107
AccII	CGCG	1 cut(s)	670
AciI	CCGC	6 cut(s)	88, 99, 102, 105, 344, 457
AclWI	GGATC	2 cut(s)	542, 555
AcuI	CTGAAG	1 cut(s)	181
AcyI	GRCGYC	1 cut(s)	59
AdeI	CACNNNGTG	1 cut(s)	770
AfaI	GTAC	2 cut(s)	32, 763
AfiI	CCNNNNNNNGG	1 cut(s)	791
AflII	CTTAAG	1 cut(s)	485
AgsI	TTSAA	8 cut(s)	208, 236, 273, 314, 598, 641, 683, 811
AjnI	CCWGG	3 cut(s)	249, 554, 580
AluBI	AGCT	4 cut(s)	142, 163, 378, 736
AluI	AGCT	4 cut(s)	142, 163, 378, 736
Alw26I	GTCTC	1 cut(s)	824
AlwI	GGATC	2 cut(s)	542, 555
AlwNI	CAGNNNCTG	1 cut(s)	736
Ama87I	CYCGRG	1 cut(s)	146
AoxI	GGCC	3 cut(s)	82, 529, 695
ApeKI	GCWGC	5 cut(s)	142, 184, 730, 733, 736
Asp700I	GAANNNNTTC	3 cut(s)	194, 268, 606
AspLEI	GCGC	2 cut(s)	61, 670
AspS9I	GGNCC	3 cut(s)	167, 467, 529
AsuHPI	GGTGA	1 cut(s)	795
AsuNHI	GCTAGC	1 cut(s)	242
AvaI	CYCGRG	1 cut(s)	146
AvaII	GGWCC	2 cut(s)	167, 467
BamHI	GGATCC	1 cut(s)	547
BanI	GGYRCC	2 cut(s)	58, 281
BbvI	GCAGC	5 cut(s)	129, 171, 723, 742, 745
BccI	CCATC	1 cut(s)	291
BceAI	ACGGC	3 cut(s)	31, 498, 516
BciT130I	CCWGG	3 cut(s)	251, 556, 582
BclI	TGATCA	1 cut(s)	522
BcoDI	GTCTC	1 cut(s)	824
BfaI	CTAG	3 cut(s)	243, 464, 471
BfoI	RGCGCY	1 cut(s)	62
BfrI	CTTAAG	1 cut(s)	485
BglII	AGATCT	1 cut(s)	685
BisI	GCNGC	7 cut(s)	102, 105, 143, 185, 731, 734, 737
BlsI	GCNGC	7 cut(s)	103, 106, 144, 186, 732, 735, 738
Bme1390I	CCNGG	3 cut(s)	251, 556, 582
Bme18I	GGWCC	2 cut(s)	167, 467
BmeT110I	CYCGRG	1 cut(s)	146
BmgT120I	GGNCC	3 cut(s)	167, 467, 529
BmiI	GGNNCC	4 cut(s)	60, 283, 530, 549
BmrFI	CCNGG	3 cut(s)	251, 556, 582
BmsI	GCATC	1 cut(s)	640
BmtI	GCTAGC	1 cut(s)	246
BpmI	CTGGAG	1 cut(s)	279
Bpu10I	CCTNAGC	1 cut(s)	692
BpuEI	CTTGAG	2 cut(s)	354, 696
Bsa29I	ATCGAT	1 cut(s)	648
BsaHI	GRCGYC	1 cut(s)	59
BsaJI	CCNNGG	4 cut(s)	249, 532, 555, 581
Bsc4I	CCNNNNNNNGG	1 cut(s)	791
Bse1I	ACTGG	1 cut(s)	635
Bse3DI	GCAATG	1 cut(s)	756
BseBI	CCWGG	3 cut(s)	251, 556, 582
BseCI	ATCGAT	1 cut(s)	648
BseDI	CCNNGG	4 cut(s)	249, 532, 555, 581
BseGI	GGATG	2 cut(s)	302, 709
BseLI	CCNNNNNNNGG	1 cut(s)	791
BseMI	GCAATG	1 cut(s)	756
BseMII	CTCAG	2 cut(s)	498, 706
BseNI	ACTGG	1 cut(s)	635
BseRI	GAGGAG	2 cut(s)	82, 85
BseXI	GCAGC	5 cut(s)	129, 171, 723, 742, 745
Bsh1236I	CGCG	1 cut(s)	670
BshFI	GGCC	3 cut(s)	84, 531, 697
BshNI	GGYRCC	2 cut(s)	58, 281
BshVI	ATCGAT	1 cut(s)	648
BsiHKCI	CYCGRG	1 cut(s)	146
BsiSI	CCGG	1 cut(s)	81
BslI	CCNNNNNNNGG	1 cut(s)	791
BsmAI	GTCTC	1 cut(s)	824
BsnI	GGCC	3 cut(s)	84, 531, 697
BsoBI	CYCGRG	1 cut(s)	146
Bsp143I	GATC	3 cut(s)	522, 547, 685
BspACI	CCGC	6 cut(s)	88, 99, 102, 105, 344, 457
BspANI	GGCC	3 cut(s)	84, 531, 697
BspCNI	CTCAG	2 cut(s)	499, 705
BspDI	ATCGAT	1 cut(s)	648
BspFNI	CGCG	1 cut(s)	670
BspLI	GGNNCC	4 cut(s)	60, 283, 530, 549
BspOI	GCTAGC	1 cut(s)	246
BspPI	GGATC	2 cut(s)	542, 555
BspT107I	GGYRCC	2 cut(s)	58, 281
BspTI	CTTAAG	1 cut(s)	485
BsrBI	CCGCTC	2 cut(s)	90, 107
BsrDI	GCAATG	1 cut(s)	756
BsrI	ACTGG	1 cut(s)	635
BssECI	CCNNGG	4 cut(s)	249, 532, 555, 581
BssMI	GATC	3 cut(s)	522, 547, 685
BssNI	GRCGYC	1 cut(s)	59
Bst2UI	CCWGG	3 cut(s)	251, 556, 582
Bst4CI	ACNGT	2 cut(s)	309, 818
Bst6I	CTCTTC	1 cut(s)	827
BstACI	GRCGYC	1 cut(s)	59
BstAFI	CTTAAG	1 cut(s)	485
BstAPI	GCANNNNNTGC	1 cut(s)	736
BstC8I	GCNNGC	2 cut(s)	244, 666
BstDEI	CTNAG	2 cut(s)	507, 692
BstDSI	CCRYGG	1 cut(s)	532
BstF5I	GGATG	2 cut(s)	302, 709
BstFNI	CGCG	1 cut(s)	670
BstH2I	RGCGCY	1 cut(s)	62
BstHHI	GCGC	2 cut(s)	61, 670
BstKTI	GATC	3 cut(s)	525, 550, 688
BstMAI	GTCTC	1 cut(s)	824
BstMBI	GATC	3 cut(s)	522, 547, 685
BstMWI	GCNNNNNNNGC	6 cut(s)	58, 113, 151, 160, 537, 736
BstNI	CCWGG	3 cut(s)	251, 556, 582
BstNSI	RCATGY	1 cut(s)	242
BstSCI	CCNGG	3 cut(s)	249, 554, 580
BstUI	CGCG	1 cut(s)	670
BstV1I	GCAGC	5 cut(s)	129, 171, 723, 742, 745
BstX2I	RGATCY	2 cut(s)	547, 685
BstYI	RGATCY	2 cut(s)	547, 685
Bsu15I	ATCGAT	1 cut(s)	648
BsuRI	GGCC	3 cut(s)	84, 531, 697
BsuTUI	ATCGAT	1 cut(s)	648
BtgI	CCRYGG	1 cut(s)	532
BtsCI	GGATG	2 cut(s)	302, 709
Cac8I	GCNNGC	2 cut(s)	244, 666
CaiI	CAGNNNCTG	1 cut(s)	736
CfoI	GCGC	2 cut(s)	61, 670
Cfr13I	GGNCC	3 cut(s)	167, 467, 529
ClaI	ATCGAT	1 cut(s)	648
CseI	GACGC	1 cut(s)	143
Csp6I	GTAC	2 cut(s)	31, 762
CspCI	CAANNNNNGTGG	2 cut(s)	393, 428
CviAII	CATG	4 cut(s)	34, 239, 362, 787
CviQI	GTAC	2 cut(s)	31, 762
DdeI	CTNAG	2 cut(s)	507, 692
DinI	GGCGCC	1 cut(s)	60
DpnI	GATC	3 cut(s)	524, 549, 687
DpnII	GATC	3 cut(s)	522, 547, 685
DraIII	CACNNNGTG	1 cut(s)	770
Eam1104I	CTCTTC	1 cut(s)	827
EarI	CTCTTC	1 cut(s)	827
EciI	GGCGGA	1 cut(s)	88
Eco147I	AGGCCT	1 cut(s)	697
Eco47I	GGWCC	2 cut(s)	167, 467
Eco57I	CTGAAG	1 cut(s)	181
Eco88I	CYCGRG	1 cut(s)	146
EcoO109I	RGGNCCY	1 cut(s)	467
EcoRII	CCWGG	3 cut(s)	249, 554, 580
EgeI	GGCGCC	1 cut(s)	60
EheI	GGCGCC	1 cut(s)	60
FaeI	CATG	4 cut(s)	37, 242, 365, 790
FatI	CATG	4 cut(s)	33, 238, 361, 786
FauI	CCCGC	1 cut(s)	351
FbaI	TGATCA	1 cut(s)	522
Fnu4HI	GCNGC	7 cut(s)	102, 105, 143, 185, 731, 734, 737
FokI	GGATG	2 cut(s)	309, 716
Fsp4HI	GCNGC	7 cut(s)	102, 105, 143, 185, 731, 734, 737
FspBI	CTAG	3 cut(s)	243, 464, 471
GlaI	GCGC	2 cut(s)	60, 669
GluI	GCNGC	7 cut(s)	102, 105, 143, 185, 731, 734, 737
GsuI	CTGGAG	1 cut(s)	279
HaeII	RGCGCY	1 cut(s)	62
HaeIII	GGCC	3 cut(s)	84, 531, 697
HapII	CCGG	1 cut(s)	81
HgaI	GACGC	1 cut(s)	143
HhaI	GCGC	2 cut(s)	61, 670
Hin1I	GRCGYC	1 cut(s)	59
Hin1II	CATG	4 cut(s)	37, 242, 365, 790
Hin6I	GCGC	2 cut(s)	59, 668
HinP1I	GCGC	2 cut(s)	59, 668
HincII	GTYRAC	2 cut(s)	327, 427
HindII	GTYRAC	2 cut(s)	327, 427
HinfI	GANTC	1 cut(s)	707
HpaII	CCGG	1 cut(s)	81
HphI	GGTGA	1 cut(s)	795
Hpy166II	GTNNAC	5 cut(s)	230, 327, 427, 578, 764
Hpy188I	TCNGA	4 cut(s)	139, 319, 410, 522
Hpy188III	TCNNGA	4 cut(s)	258, 680, 713, 770
Hpy8I	GTNNAC	5 cut(s)	230, 327, 427, 578, 764
Hpy99I	CGWCG	2 cut(s)	52, 116
HpyAV	CCTTC	3 cut(s)	21, 617, 817
HpyCH4III	ACNGT	2 cut(s)	309, 818
HpyCH4V	TGCA	1 cut(s)	664
HpyF10VI	GCNNNNNNNGC	6 cut(s)	58, 113, 151, 160, 537, 736
HpyF3I	CTNAG	2 cut(s)	507, 692
Hsp92I	GRCGYC	1 cut(s)	59
Hsp92II	CATG	4 cut(s)	37, 242, 365, 790
HspAI	GCGC	2 cut(s)	59, 668
KasI	GGCGCC	1 cut(s)	58
Ksp22I	TGATCA	1 cut(s)	522
Kzo9I	GATC	3 cut(s)	522, 547, 685
LmnI	GCTCC	3 cut(s)	95, 139, 151
Lsp1109I	GCAGC	5 cut(s)	129, 171, 723, 742, 745
LweI	GCATC	1 cut(s)	640
MaeI	CTAG	3 cut(s)	243, 464, 471
MaeIII	GTNAC	2 cut(s)	155, 801
MalI	GATC	3 cut(s)	524, 549, 687
MbiI	CCGCTC	2 cut(s)	90, 107
MboI	GATC	3 cut(s)	522, 547, 685
MboII	GAAGA	4 cut(s)	167, 572, 695, 844
MflI	RGATCY	2 cut(s)	547, 685
MluCI	AATT	5 cut(s)	190, 355, 390, 642, 743
Mly113I	GGCGCC	1 cut(s)	59
MroXI	GAANNNNTTC	3 cut(s)	194, 268, 606
MseI	TTAA	2 cut(s)	396, 486
MslI	CAYNNNNRTG	1 cut(s)	597
MspA1I	CMGCKG	1 cut(s)	736
MspCI	CTTAAG	1 cut(s)	485
MspI	CCGG	1 cut(s)	81
MspR9I	CCNGG	3 cut(s)	251, 556, 582
MvaI	CCWGG	3 cut(s)	251, 556, 582
MvnI	CGCG	1 cut(s)	670
MwoI	GCNNNNNNNGC	6 cut(s)	58, 113, 151, 160, 537, 736
NarI	GGCGCC	1 cut(s)	59
NdeII	GATC	3 cut(s)	522, 547, 685
NheI	GCTAGC	1 cut(s)	242
NlaIII	CATG	4 cut(s)	37, 242, 365, 790
NlaIV	GGNNCC	4 cut(s)	60, 283, 530, 549
NmeAIII	GCCGAG	1 cut(s)	142
NmuCI	GTSAC	2 cut(s)	155, 801
NspI	RCATGY	1 cut(s)	242
PceI	AGGCCT	1 cut(s)	697
PdmI	GAANNNNTTC	3 cut(s)	194, 268, 606
PfeI	GAWTC	1 cut(s)	707
PkrI	GCNGC	7 cut(s)	103, 106, 144, 186, 732, 735, 738
PluTI	GGCGCC	1 cut(s)	62
PpuMI	RGGWCCY	1 cut(s)	467
PsiI	TTATAA	1 cut(s)	444
Psp5II	RGGWCCY	1 cut(s)	467
Psp6I	CCWGG	3 cut(s)	249, 554, 580
PspGI	CCWGG	3 cut(s)	249, 554, 580
PspN4I	GGNNCC	4 cut(s)	60, 283, 530, 549
PspPI	GGNCC	3 cut(s)	167, 467, 529
PspPPI	RGGWCCY	1 cut(s)	467
PstNI	CAGNNNCTG	1 cut(s)	736
PsuI	RGATCY	2 cut(s)	547, 685
PvuII	CAGCTG	1 cut(s)	736
RsaI	GTAC	2 cut(s)	32, 763
RsaNI	GTAC	2 cut(s)	31, 762
RseI	CAYNNNNRTG	1 cut(s)	597
SaqAI	TTAA	2 cut(s)	396, 486
SatI	GCNGC	7 cut(s)	102, 105, 143, 185, 731, 734, 737
Sau3AI	GATC	3 cut(s)	522, 547, 685
Sau96I	GGNCC	3 cut(s)	167, 467, 529
ScrFI	CCNGG	3 cut(s)	251, 556, 582
SfaNI	GCATC	1 cut(s)	640
SfoI	GGCGCC	1 cut(s)	60
SinI	GGWCC	2 cut(s)	167, 467
SmiMI	CAYNNNNRTG	1 cut(s)	597
SmlI	CTYRAG	3 cut(s)	369, 485, 711
SmoI	CTYRAG	3 cut(s)	369, 485, 711
Sse9I	AATT	5 cut(s)	190, 355, 390, 642, 743
SseBI	AGGCCT	1 cut(s)	697
SsiI	CCGC	6 cut(s)	88, 99, 102, 105, 344, 457
SspDI	GGCGCC	1 cut(s)	58
SspMI	CTAG	3 cut(s)	243, 464, 471
StuI	AGGCCT	1 cut(s)	697
StyD4I	CCNGG	3 cut(s)	249, 554, 580
TaaI	ACNGT	2 cut(s)	309, 818
TaqI	TCGA	1 cut(s)	648
TaqII	GACCGA	1 cut(s)	155
TasI	AATT	5 cut(s)	190, 355, 390, 642, 743
TauI	GCSGC	2 cut(s)	104, 107
TfiI	GAWTC	1 cut(s)	707
Tru1I	TTAA	2 cut(s)	396, 486
Tru9I	TTAA	2 cut(s)	396, 486
TseFI	GTSAC	2 cut(s)	155, 801
TseI	GCWGC	5 cut(s)	142, 184, 730, 733, 736
Tsp45I	GTSAC	2 cut(s)	155, 801
TspDTI	ATGAA	5 cut(s)	599, 603, 615, 720, 845
TspGWI	ACGGA	2 cut(s)	309, 415
Vha464I	CTTAAG	1 cut(s)	485
VpaK11BI	GGWCC	2 cut(s)	167, 467
XceI	RCATGY	1 cut(s)	242
XcmI	CCANNNNNNNNNTGG	1 cut(s)	354
XmnI	GAANNNNTTC	3 cut(s)	194, 268, 606
XspI	CTAG	3 cut(s)	243, 464, 471

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.