Rorug05G0434500

KH domain-containing protein

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
rosa_rugosa
GWHBQTZ00000005
OG0007994
Physical Location & Seq
Forward (+)
60336871 .. 60337512
642 bp
Loading structure...
UTR
Exon/CDS
Intron
Rorug05G0434500.1

Sequence Viewer

Length: 642 bp
ATGTCTCGTAACGGACTGGTTCCAGATACCGTTACTTATACCACTCTTATCGATGGTTTCTGCAAAGTGAGGAGGATACAAGCAGCAAAGAAGTTGTTCTCTAATATGCAAGCTCTGGGGCGCCAACTTCCAAATGTTCAGACTTATGCAGTTTTACTGAATGGCCTATGTAGAAACCAACAACTTCCAATGGCAATTGAATTGGTTAGAGAGATGGAAGGCAGAAAGATAGAGCCAGATATTGTAATCTACAGTATTCTAATCCAGGGTTTCTGCATAGCGGGAGAAGTTGAATCTGCAAGAGATCTCTTCTGTAGTTTATCATCAAAACGACTTCAACCTGATGTCTGGGCATACAACAAATTGATTAACGGACTTTGTCATGGAGGCCTAATCAGTGAAGCAGAAAAGTTGCTAAAAGAAATGGAAGAGAAAGGCAGTCATCCAGACAGTTACACTTATAACACAATTATACGAGGGTTGATCAATAACAATGAGACACTGCGGGCAATGGAACTTATTCAACAAATGGTGGAGAGGGGTTTCTCTGCAGATGCATCAACTGTGGAATTGATAGTTGGCCTATTGTCTAAAGATAAAGTAGATCCTGCTTTATTGCCTTCGTTAAAAAGTTCCTTGTGA
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
No ontology terms assigned.
KEGG Pathways
Metabolic & Signaling
No pathways identified.
Pfam Domains
Protein Families
KH_1 STAR_dimer

Protein Analysis

213

Amino Acids

23.73

Weight (kDa)

6.74

Isoelectric Point (pI)

31.01

Instability Index
Protein Domains (Pfam)
Domain Name Pfam ID Position E-value Description
PPR_3 PF13812 1 - 54 4.9e-06 Pentatricopeptide repeat domain
PPR_1 PF12854 4 - 36 3.5e-12 PPR repeat
PPR_2 PF13041 8 - 58 2.8e-16 PPR repeat family
PPR PF01535 11 - 40 8.4e-07 PPR repeat
PPR_2 PF13041 44 - 92 2.1e-13 PPR repeat family
PPR_1 PF12854 44 - 73 1.5e-06 PPR repeat
TPR_24 PF23276 57 - 175 1.3e-08 Fungal tetratrico peptide repeats
PPR_3 PF13812 68 - 124 8.3e-07 Pentatricopeptide repeat domain
PPR_1 PF12854 77 - 104 1.9e-08 PPR repeat
PPR_2 PF13041 79 - 128 1.3e-13 PPR repeat family
PPR_1 PF12854 111 - 143 7e-10 PPR repeat
PPR_2 PF13041 114 - 162 1.1e-16 PPR repeat family
PPR PF01535 118 - 146 4.2e-08 PPR repeat
PPR_1 PF12854 145 - 178 1.9e-06 PPR repeat
PPR_2 PF13041 153 - 190 4.1e-07 PPR repeat family
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
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Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AanI TTATAA 1 cut(s) 462
AccB1I GGYRCC 1 cut(s) 120
AciI CCGC 2 cut(s) 281, 505
AclWI GGATC 1 cut(s) 599
AcyI GRCGYC 1 cut(s) 121
AgsI TTSAA 4 cut(s) 200, 293, 338, 524
AjnI CCWGG 1 cut(s) 264
AjuI GAANNNNNNNTTGG 2 cut(s) 561, 593
AluBI AGCT 1 cut(s) 113
AluI AGCT 1 cut(s) 113
Alw26I GTCTC 2 cut(s) 9, 491
AlwI GGATC 1 cut(s) 599
AoxI GGCC 3 cut(s) 163, 388, 580
ApeKI GCWGC 1 cut(s) 83
Asp700I GAANNNNTTC 2 cut(s) 95, 519
AspLEI GCGC 1 cut(s) 123
BanI GGYRCC 1 cut(s) 120
BbvI GCAGC 1 cut(s) 95
BccI CCATC 2 cut(s) 47, 208
BciT130I CCWGG 1 cut(s) 266
BciVI GTATCC 1 cut(s) 69
BclI TGATCA 1 cut(s) 483
BcoDI GTCTC 2 cut(s) 9, 491
BfmI CTRYAG 3 cut(s) 250, 313, 549
BfoI RGCGCY 1 cut(s) 124
BfuI GTATCC 1 cut(s) 69
BglII AGATCT 1 cut(s) 304
BisI GCNGC 1 cut(s) 84
BlsI GCNGC 1 cut(s) 85
Bme1390I CCNGG 1 cut(s) 266
BmiI GGNNCC 2 cut(s) 21, 122
BmrFI CCNGG 1 cut(s) 266
BmsI GCATC 2 cut(s) 544, 566
Bsa29I ATCGAT 1 cut(s) 51
BsaHI GRCGYC 1 cut(s) 121
BsaJI CCNNGG 1 cut(s) 265
Bse1I ACTGG 1 cut(s) 21
Bse3DI GCAATG 1 cut(s) 516
BseBI CCWGG 1 cut(s) 266
BseCI ATCGAT 1 cut(s) 51
BseDI CCNNGG 1 cut(s) 265
BseGI GGATG 1 cut(s) 442
BseMI GCAATG 1 cut(s) 516
BseNI ACTGG 1 cut(s) 21
BseRI GAGGAG 1 cut(s) 85
BseXI GCAGC 1 cut(s) 95
BshFI GGCC 3 cut(s) 165, 390, 582
BshNI GGYRCC 1 cut(s) 120
BshVI ATCGAT 1 cut(s) 51
BsmAI GTCTC 2 cut(s) 9, 491
BsnI GGCC 3 cut(s) 165, 390, 582
Bsp143I GATC 3 cut(s) 304, 483, 604
BspACI CCGC 2 cut(s) 281, 505
BspANI GGCC 3 cut(s) 165, 390, 582
BspDI ATCGAT 1 cut(s) 51
BspLI GGNNCC 2 cut(s) 21, 122
BspMAI CTGCAG 1 cut(s) 553
BspPI GGATC 1 cut(s) 599
BspT107I GGYRCC 1 cut(s) 120
BsrDI GCAATG 1 cut(s) 516
BsrI ACTGG 1 cut(s) 21
BssECI CCNNGG 1 cut(s) 265
BssMI GATC 3 cut(s) 304, 483, 604
BssNI GRCGYC 1 cut(s) 121
Bst2UI CCWGG 1 cut(s) 266
Bst4CI ACNGT 4 cut(s) 31, 254, 452, 565
Bst6I CTCTTC 2 cut(s) 314, 423
BstACI GRCGYC 1 cut(s) 121
BstC8I GCNNGC 2 cut(s) 111, 507
BstF5I GGATG 1 cut(s) 442
BstH2I RGCGCY 1 cut(s) 124
BstHHI GCGC 1 cut(s) 123
BstKTI GATC 3 cut(s) 307, 486, 607
BstMAI GTCTC 2 cut(s) 9, 491
BstMBI GATC 3 cut(s) 304, 483, 604
BstNI CCWGG 1 cut(s) 266
BstSCI CCNGG 1 cut(s) 264
BstSFI CTRYAG 3 cut(s) 250, 313, 549
BstV1I GCAGC 1 cut(s) 95
BstX2I RGATCY 2 cut(s) 304, 604
BstYI RGATCY 2 cut(s) 304, 604
Bsu15I ATCGAT 1 cut(s) 51
BsuI GTATCC 1 cut(s) 69
BsuRI GGCC 3 cut(s) 165, 390, 582
BsuTUI ATCGAT 1 cut(s) 51
BtsCI GGATG 1 cut(s) 442
BtsI GCAGTG 1 cut(s) 500
BtsIMutI CAGTG 2 cut(s) 403, 500
Cac8I GCNNGC 2 cut(s) 111, 507
CfoI GCGC 1 cut(s) 123
ClaI ATCGAT 1 cut(s) 51
CviAII CATG 1 cut(s) 383
CviJI RGCY 5 cut(s) 113, 165, 235, 390, 582
CviKI_1 RGCY 5 cut(s) 113, 165, 235, 390, 582
DinI GGCGCC 1 cut(s) 122
DpnI GATC 3 cut(s) 306, 485, 606
DpnII GATC 3 cut(s) 304, 483, 604
Eam1104I CTCTTC 2 cut(s) 314, 423
EarI CTCTTC 2 cut(s) 314, 423
Eco147I AGGCCT 1 cut(s) 390
EcoRII CCWGG 1 cut(s) 264
EcoT22I ATGCAT 1 cut(s) 559
EgeI GGCGCC 1 cut(s) 122
EheI GGCGCC 1 cut(s) 122
FaeI CATG 1 cut(s) 386
FaiI YATR 9 cut(s) 39, 107, 147, 169, 278, 355, 384, 462, 473
FatI CATG 1 cut(s) 382
FauI CCCGC 2 cut(s) 274, 498
FbaI TGATCA 1 cut(s) 483
Fnu4HI GCNGC 1 cut(s) 84
FokI GGATG 1 cut(s) 429
Fsp4HI GCNGC 1 cut(s) 84
GlaI GCGC 1 cut(s) 122
GluI GCNGC 1 cut(s) 84
HaeII RGCGCY 1 cut(s) 124
HaeIII GGCC 3 cut(s) 165, 390, 582
HhaI GCGC 1 cut(s) 123
Hin1I GRCGYC 1 cut(s) 121
Hin1II CATG 1 cut(s) 386
Hin6I GCGC 1 cut(s) 121
HinP1I GCGC 1 cut(s) 121
HinfI GANTC 1 cut(s) 293
Hpy188I TCNGA 1 cut(s) 141
Hpy188III TCNNGA 2 cut(s) 23, 446
HpyAV CCTTC 2 cut(s) 212, 630
HpyCH4III ACNGT 4 cut(s) 31, 254, 452, 565
HpyCH4V TGCA 7 cut(s) 63, 109, 149, 276, 299, 551, 557
Hsp92I GRCGYC 1 cut(s) 121
Hsp92II CATG 1 cut(s) 386
HspAI GCGC 1 cut(s) 121
KasI GGCGCC 1 cut(s) 120
Ksp22I TGATCA 1 cut(s) 483
Kzo9I GATC 3 cut(s) 304, 483, 604
Lsp1109I GCAGC 1 cut(s) 95
LweI GCATC 2 cut(s) 544, 566
MaeIII GTNAC 3 cut(s) 8, 31, 452
MalI GATC 3 cut(s) 306, 485, 606
MboI GATC 3 cut(s) 304, 483, 604
MboII GAAGA 2 cut(s) 301, 440
MfeI CAATTG 1 cut(s) 195
MflI RGATCY 2 cut(s) 304, 604
MluCI AATT 5 cut(s) 195, 200, 362, 468, 569
Mly113I GGCGCC 1 cut(s) 121
MnlI CCTC 5 cut(s) 63, 66, 380, 470, 531
Mph1103I ATGCAT 1 cut(s) 559
MroXI GAANNNNTTC 2 cut(s) 95, 519
MseI TTAA 2 cut(s) 369, 626
MspR9I CCNGG 1 cut(s) 266
MunI CAATTG 1 cut(s) 195
MvaI CCWGG 1 cut(s) 266
NarI GGCGCC 1 cut(s) 121
NdeII GATC 3 cut(s) 304, 483, 604
NlaIII CATG 1 cut(s) 386
NlaIV GGNNCC 2 cut(s) 21, 122
NsiI ATGCAT 1 cut(s) 559
PceI AGGCCT 1 cut(s) 390
PdmI GAANNNNTTC 2 cut(s) 95, 519
PfeI GAWTC 1 cut(s) 293
PflFI GACNNNGTC 1 cut(s) 378
PkrI GCNGC 1 cut(s) 85
PluTI GGCGCC 1 cut(s) 124
PsiI TTATAA 1 cut(s) 462
Psp6I CCWGG 1 cut(s) 264
PspGI CCWGG 1 cut(s) 264
PspN4I GGNNCC 2 cut(s) 21, 122
PstI CTGCAG 1 cut(s) 553
PsuI RGATCY 2 cut(s) 304, 604
PsyI GACNNNGTC 1 cut(s) 378
SaqAI TTAA 2 cut(s) 369, 626
SatI GCNGC 1 cut(s) 84
Sau3AI GATC 3 cut(s) 304, 483, 604
ScrFI CCNGG 1 cut(s) 266
SetI ASST 2 cut(s) 115, 343
SfaNI GCATC 2 cut(s) 544, 566
SfcI CTRYAG 3 cut(s) 250, 313, 549
SfoI GGCGCC 1 cut(s) 122
Sse9I AATT 5 cut(s) 195, 200, 362, 468, 569
SseBI AGGCCT 1 cut(s) 390
SsiI CCGC 2 cut(s) 281, 505
SspDI GGCGCC 1 cut(s) 120
StuI AGGCCT 1 cut(s) 390
StyD4I CCNGG 1 cut(s) 264
TaaI ACNGT 4 cut(s) 31, 254, 452, 565
TaqI TCGA 1 cut(s) 51
TasI AATT 5 cut(s) 195, 200, 362, 468, 569
TfiI GAWTC 1 cut(s) 293
Tru1I TTAA 2 cut(s) 369, 626
Tru9I TTAA 2 cut(s) 369, 626
TscAI CASTG 2 cut(s) 403, 507
TseI GCWGC 1 cut(s) 83
TspGWI ACGGA 2 cut(s) 27, 387
TspRI CASTG 2 cut(s) 403, 507
Tth111I GACNNNGTC 1 cut(s) 378
XmnI GAANNNNTTC 2 cut(s) 95, 519
Zsp2I ATGCAT 1 cut(s) 559
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.