RLG00000036508

KH domain-containing protein

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
rosa_laevigata
Chr7
OG0007994
Physical Location & Seq
Reverse (-)
81401968 .. 81406177
4210 bp
Loading structure...
UTR
Exon/CDS
Intron
RLM00000036508

Sequence Viewer

Length: 846 bp
ATGACATCATCATCGAGCGTTGGTGGAAGGTACATGGCTTACTCGCCCTCTCCGTCGGCCCCTCTCTCTCCTCACCTCTCCGGCCTTCGCTCCGTCTCCTCCTCCGCCGCTCTCGTCGCCGAGCAAGAAAAAGGACTCCCTTTCCTTGTGATTCCTCCCTTTCCTAAAATATTGCGTGTAACTACACTGTTGGGGAATGCATCAGTTTTAGGTCAAAGTGGACTTGAACATGCTAGCCCCCTGGCTTCTGGAGCAATGTTTTCAAATGGAGGTGCCGATATGAACGGATGGGCATCACGGTTTCAATCAGAAATGTCAAGTTTATTACAGCCCTCATCAACACAAAATTGGCTTAGTCCTCAAAGTAGCTCATCTGGTCTAATTGTTAAGCGGACAATCAGAGTGGATATTCCCGTTGACAAATATCCTAATTATAACTTTGTTGGGCGGTTGCTAGGTCCTAGGGGGAACTCTCTTAAGCGAGTGGAAGCAACTACTGAGTGCCGTGTTCTGATCAGGGGCCGTGGTAGCATAAAGGATCCAGCCAGGGAAGATATGATGAGAGGTAAACCGGGGTATGAACATTTGAATGAACCTCTTCATATACTAGTGGAGGCAGAACTACCAGTTGAAATTGTTGATGCTCGTTTATTACAAGCGCGTGAAGTACTTGAAGATCTGCTCAGGCCTGTGGATGAATCTCAAGATTTCTACAAGAAGCAGCAGTTGCGAGAGTTGGCAATGCTCAATGGTACACTTCGTGATGAGGGTTCTCCCATGTCTGGTTCTGTATCACCCTTCAACAACAGTCTTGGTGGTATGAAGAGGGCAAAGACCAGGGGGTAA
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
No ontology terms assigned.
KEGG Pathways
Metabolic & Signaling
No pathways identified.
Pfam Domains
Protein Families
KH_1 STAR_dimer

Protein Analysis

282

Amino Acids

30.46

Weight (kDa)

9.37

Isoelectric Point (pI)

63.43

Instability Index
Protein Domains (Pfam)
Domain Name Pfam ID Position E-value Description
KH-I_KHDC4-BBP PF22675 141 - 228 3e-19 KHDC4/BBP-like, KH-domain type I
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
Loading...
Style Settings
Image
Tree File
Tip: Beautify your tree with professional tools

Download the Full Tree (.nwk) file, then upload it to any of the following tools to customize colors, fonts, annotations, clades, and branch support.

Publication-ready
iTOL Interactive Tree Of Life · Most popular EvolView Flexible annotations MEGA Desktop phylogenetics suite FigTree Desktop tree editor

Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AanI TTATAA 1 cut(s) 435
AccB1I GGYRCC 1 cut(s) 272
AccBSI CCGCTC 1 cut(s) 110
AccII CGCG 1 cut(s) 661
AciI CCGC 4 cut(s) 105, 108, 391, 448
AclWI GGATC 2 cut(s) 533, 546
AdeI CACNNNGTG 1 cut(s) 761
AfaI GTAC 3 cut(s) 32, 669, 754
AfiI CCNNNNNNNGG 1 cut(s) 782
AflII CTTAAG 1 cut(s) 476
AgsI TTSAA 7 cut(s) 227, 264, 305, 589, 632, 674, 802
AhlI ACTAGT 1 cut(s) 607
AjnI CCWGG 3 cut(s) 240, 545, 836
AluBI AGCT 1 cut(s) 369
AluI AGCT 1 cut(s) 369
Alw26I GTCTC 1 cut(s) 100
AlwI GGATC 2 cut(s) 533, 546
AoxI GGCC 4 cut(s) 57, 82, 520, 686
ApeKI GCWGC 1 cut(s) 721
Asp700I GAANNNNTTC 1 cut(s) 597
AspA2I CCTAGG 1 cut(s) 461
AspLEI GCGC 1 cut(s) 661
AspS9I GGNCC 3 cut(s) 58, 458, 520
AsuC2I CCSGG 1 cut(s) 573
AsuHPI GGTGA 2 cut(s) 65, 786
AsuNHI GCTAGC 1 cut(s) 233
AvaII GGWCC 1 cut(s) 458
AvrII CCTAGG 1 cut(s) 461
BamHI GGATCC 1 cut(s) 538
BanI GGYRCC 1 cut(s) 272
BbvI GCAGC 1 cut(s) 733
BccI CCATC 1 cut(s) 282
BceAI ACGGC 2 cut(s) 489, 507
BciT130I CCWGG 3 cut(s) 242, 547, 838
BclI TGATCA 1 cut(s) 513
BcnI CCSGG 1 cut(s) 573
BcoDI GTCTC 1 cut(s) 100
BcuI ACTAGT 1 cut(s) 607
BfaI CTAG 4 cut(s) 234, 455, 462, 608
BfrI CTTAAG 1 cut(s) 476
BglII AGATCT 1 cut(s) 676
BisI GCNGC 2 cut(s) 108, 722
BlnI CCTAGG 1 cut(s) 461
BlsI GCNGC 2 cut(s) 109, 723
BmcAI AGTACT 1 cut(s) 669
Bme1390I CCNGG 4 cut(s) 242, 547, 573, 838
Bme18I GGWCC 1 cut(s) 458
BmgT120I GGNCC 3 cut(s) 58, 458, 520
BmiI GGNNCC 4 cut(s) 60, 274, 521, 540
BmrFI CCNGG 4 cut(s) 242, 547, 573, 838
BmsI GCATC 3 cut(s) 209, 302, 631
BmtI GCTAGC 1 cut(s) 237
BpmI CTGGAG 1 cut(s) 270
Bpu10I CCTNAGC 1 cut(s) 683
BpuEI CTTGAG 1 cut(s) 687
BpuMI CCSGG 1 cut(s) 573
BsaBI GATNNNNATC 1 cut(s) 292
BsaJI CCNNGG 6 cut(s) 240, 461, 523, 546, 572, 837
Bsc4I CCNNNNNNNGG 1 cut(s) 782
Bse1I ACTGG 1 cut(s) 626
Bse3DI GCAATG 2 cut(s) 261, 747
Bse8I GATNNNNATC 1 cut(s) 292
BseBI CCWGG 3 cut(s) 242, 547, 838
BseDI CCNNGG 6 cut(s) 240, 461, 523, 546, 572, 837
BseGI GGATG 2 cut(s) 293, 700
BseJI GATNNNNATC 1 cut(s) 292
BseLI CCNNNNNNNGG 1 cut(s) 782
BseMI GCAATG 2 cut(s) 261, 747
BseMII CTCAG 2 cut(s) 489, 697
BseNI ACTGG 1 cut(s) 626
BseRI GAGGAG 3 cut(s) 60, 88, 91
BseXI GCAGC 1 cut(s) 733
Bsh1236I CGCG 1 cut(s) 661
BshFI GGCC 4 cut(s) 59, 84, 522, 688
BshNI GGYRCC 1 cut(s) 272
BsiSI CCGG 2 cut(s) 81, 572
BslI CCNNNNNNNGG 1 cut(s) 782
BsmAI GTCTC 1 cut(s) 100
BsmBI CGTCTC 1 cut(s) 100
BsmI GAATGC 1 cut(s) 202
BsnI GGCC 4 cut(s) 59, 84, 522, 688
Bsp143I GATC 3 cut(s) 513, 538, 676
BspACI CCGC 4 cut(s) 105, 108, 391, 448
BspANI GGCC 4 cut(s) 59, 84, 522, 688
BspCNI CTCAG 2 cut(s) 490, 696
BspFNI CGCG 1 cut(s) 661
BspLI GGNNCC 4 cut(s) 60, 274, 521, 540
BspOI GCTAGC 1 cut(s) 237
BspPI GGATC 2 cut(s) 533, 546
BspT107I GGYRCC 1 cut(s) 272
BspTI CTTAAG 1 cut(s) 476
BsrBI CCGCTC 1 cut(s) 110
BsrDI GCAATG 2 cut(s) 261, 747
BsrI ACTGG 1 cut(s) 626
BssECI CCNNGG 6 cut(s) 240, 461, 523, 546, 572, 837
BssMI GATC 3 cut(s) 513, 538, 676
BssT1I CCWWGG 1 cut(s) 461
Bst2UI CCWGG 3 cut(s) 242, 547, 838
Bst4CI ACNGT 3 cut(s) 189, 300, 809
Bst6I CTCTTC 2 cut(s) 603, 818
BstAFI CTTAAG 1 cut(s) 476
BstAPI GCANNNNNTGC 1 cut(s) 727
BstC8I GCNNGC 1 cut(s) 235
BstDEI CTNAG 3 cut(s) 353, 498, 683
BstDSI CCRYGG 1 cut(s) 523
BstF5I GGATG 2 cut(s) 293, 700
BstFNI CGCG 1 cut(s) 661
BstHHI GCGC 1 cut(s) 661
BstKTI GATC 3 cut(s) 516, 541, 679
BstMAI GTCTC 1 cut(s) 100
BstMBI GATC 3 cut(s) 513, 538, 676
BstMWI GCNNNNNNNGC 4 cut(s) 116, 251, 528, 727
BstNI CCWGG 3 cut(s) 242, 547, 838
BstNSI RCATGY 1 cut(s) 233
BstSCI CCNGG 4 cut(s) 240, 545, 571, 836
BstUI CGCG 1 cut(s) 661
BstV1I GCAGC 1 cut(s) 733
BstX2I RGATCY 2 cut(s) 538, 676
BstYI RGATCY 2 cut(s) 538, 676
BsuRI GGCC 4 cut(s) 59, 84, 522, 688
BtgI CCRYGG 1 cut(s) 523
BtsCI GGATG 2 cut(s) 293, 700
BtsIMutI CAGTG 1 cut(s) 185
Cac8I GCNNGC 1 cut(s) 235
CfoI GCGC 1 cut(s) 661
Cfr13I GGNCC 3 cut(s) 58, 458, 520
Csp6I GTAC 3 cut(s) 31, 668, 753
CspCI CAANNNNNGTGG 2 cut(s) 384, 419
CviAII CATG 3 cut(s) 34, 230, 778
CviQI GTAC 3 cut(s) 31, 668, 753
DdeI CTNAG 3 cut(s) 353, 498, 683
DpnI GATC 3 cut(s) 515, 540, 678
DpnII GATC 3 cut(s) 513, 538, 676
DraIII CACNNNGTG 1 cut(s) 761
Eam1104I CTCTTC 2 cut(s) 603, 818
EarI CTCTTC 2 cut(s) 603, 818
EciI GGCGGA 1 cut(s) 94
Eco130I CCWWGG 1 cut(s) 461
Eco147I AGGCCT 1 cut(s) 688
Eco47I GGWCC 1 cut(s) 458
EcoO109I RGGNCCY 1 cut(s) 458
EcoRII CCWGG 3 cut(s) 240, 545, 836
EcoT14I CCWWGG 1 cut(s) 461
EcoT22I ATGCAT 1 cut(s) 202
ErhI CCWWGG 1 cut(s) 461
Esp3I CGTCTC 1 cut(s) 100
FaeI CATG 3 cut(s) 37, 233, 781
FatI CATG 3 cut(s) 33, 229, 777
FbaI TGATCA 1 cut(s) 513
Fnu4HI GCNGC 2 cut(s) 108, 722
FokI GGATG 2 cut(s) 300, 707
Fsp4HI GCNGC 2 cut(s) 108, 722
FspBI CTAG 4 cut(s) 234, 455, 462, 608
GlaI GCGC 1 cut(s) 660
GluI GCNGC 2 cut(s) 108, 722
GsuI CTGGAG 1 cut(s) 270
HaeIII GGCC 4 cut(s) 59, 84, 522, 688
HapII CCGG 2 cut(s) 81, 572
HhaI GCGC 1 cut(s) 661
Hin1II CATG 3 cut(s) 37, 233, 781
Hin6I GCGC 1 cut(s) 659
HinP1I GCGC 1 cut(s) 659
HincII GTYRAC 1 cut(s) 418
HindII GTYRAC 1 cut(s) 418
HinfI GANTC 3 cut(s) 135, 151, 698
HpaII CCGG 2 cut(s) 81, 572
HphI GGTGA 2 cut(s) 65, 786
Hpy166II GTNNAC 4 cut(s) 221, 418, 569, 755
Hpy188I TCNGA 3 cut(s) 310, 401, 513
Hpy188III TCNNGA 3 cut(s) 249, 704, 761
Hpy8I GTNNAC 4 cut(s) 221, 418, 569, 755
Hpy99I CGWCG 2 cut(s) 58, 119
HpyAV CCTTC 3 cut(s) 21, 95, 808
HpyCH4III ACNGT 3 cut(s) 189, 300, 809
HpyCH4V TGCA 1 cut(s) 200
HpyF10VI GCNNNNNNNGC 4 cut(s) 116, 251, 528, 727
HpyF3I CTNAG 3 cut(s) 353, 498, 683
Hsp92II CATG 3 cut(s) 37, 233, 781
HspAI GCGC 1 cut(s) 659
Ksp22I TGATCA 1 cut(s) 513
Kzo9I GATC 3 cut(s) 513, 538, 676
LmnI GCTCC 2 cut(s) 95, 251
Lsp1109I GCAGC 1 cut(s) 733
LweI GCATC 3 cut(s) 209, 302, 631
MaeI CTAG 4 cut(s) 234, 455, 462, 608
MaeIII GTNAC 1 cut(s) 178
MalI GATC 3 cut(s) 515, 540, 678
MbiI CCGCTC 1 cut(s) 110
MboI GATC 3 cut(s) 513, 538, 676
MboII GAAGA 4 cut(s) 563, 590, 686, 835
MflI RGATCY 2 cut(s) 538, 676
MluCI AATT 4 cut(s) 346, 381, 430, 633
MlyI GAGTC 1 cut(s) 129
Mph1103I ATGCAT 1 cut(s) 202
MroXI GAANNNNTTC 1 cut(s) 597
MseI TTAA 2 cut(s) 387, 477
MslI CAYNNNNRTG 1 cut(s) 588
MspCI CTTAAG 1 cut(s) 476
MspI CCGG 2 cut(s) 81, 572
MspR9I CCNGG 4 cut(s) 242, 547, 573, 838
Mva1269I GAATGC 1 cut(s) 202
MvaI CCWGG 3 cut(s) 242, 547, 838
MvnI CGCG 1 cut(s) 661
MwoI GCNNNNNNNGC 4 cut(s) 116, 251, 528, 727
NciI CCSGG 1 cut(s) 573
NdeII GATC 3 cut(s) 513, 538, 676
NheI GCTAGC 1 cut(s) 233
NlaIII CATG 3 cut(s) 37, 233, 781
NlaIV GGNNCC 4 cut(s) 60, 274, 521, 540
NmeAIII GCCGAG 1 cut(s) 145
NsiI ATGCAT 1 cut(s) 202
NspI RCATGY 1 cut(s) 233
PceI AGGCCT 1 cut(s) 688
PcsI WCGNNNNNNNCGW 1 cut(s) 50
PctI GAATGC 1 cut(s) 202
PdmI GAANNNNTTC 1 cut(s) 597
PfeI GAWTC 2 cut(s) 151, 698
PkrI GCNGC 2 cut(s) 109, 723
PleI GAGTC 1 cut(s) 129
PpsI GAGTC 1 cut(s) 129
PpuMI RGGWCCY 1 cut(s) 458
PsiI TTATAA 1 cut(s) 435
Psp5II RGGWCCY 1 cut(s) 458
Psp6I CCWGG 3 cut(s) 240, 545, 836
PspGI CCWGG 3 cut(s) 240, 545, 836
PspN4I GGNNCC 4 cut(s) 60, 274, 521, 540
PspPI GGNCC 3 cut(s) 58, 458, 520
PspPPI RGGWCCY 1 cut(s) 458
PsuI RGATCY 2 cut(s) 538, 676
RsaI GTAC 3 cut(s) 32, 669, 754
RsaNI GTAC 3 cut(s) 31, 668, 753
RseI CAYNNNNRTG 1 cut(s) 588
SaqAI TTAA 2 cut(s) 387, 477
SatI GCNGC 2 cut(s) 108, 722
Sau3AI GATC 3 cut(s) 513, 538, 676
Sau96I GGNCC 3 cut(s) 58, 458, 520
ScaI AGTACT 1 cut(s) 669
SchI GAGTC 1 cut(s) 129
ScrFI CCNGG 4 cut(s) 242, 547, 573, 838
SetI ASST 8 cut(s) 32, 78, 214, 274, 371, 460, 568, 598
SfaNI GCATC 3 cut(s) 209, 302, 631
SinI GGWCC 1 cut(s) 458
SmiMI CAYNNNNRTG 1 cut(s) 588
SmlI CTYRAG 2 cut(s) 476, 702
SmoI CTYRAG 2 cut(s) 476, 702
SpeI ACTAGT 1 cut(s) 607
Sse9I AATT 4 cut(s) 346, 381, 430, 633
SseBI AGGCCT 1 cut(s) 688
SsiI CCGC 4 cut(s) 105, 108, 391, 448
SspI AATATT 1 cut(s) 171
SspMI CTAG 4 cut(s) 234, 455, 462, 608
StuI AGGCCT 1 cut(s) 688
StyD4I CCNGG 4 cut(s) 240, 545, 571, 836
StyI CCWWGG 1 cut(s) 461
TaaI ACNGT 3 cut(s) 189, 300, 809
TaqI TCGA 1 cut(s) 14
TasI AATT 4 cut(s) 346, 381, 430, 633
TatI WGTACW 1 cut(s) 667
TauI GCSGC 1 cut(s) 110
TfiI GAWTC 2 cut(s) 151, 698
Tru1I TTAA 2 cut(s) 387, 477
Tru9I TTAA 2 cut(s) 387, 477
TscAI CASTG 1 cut(s) 192
TseI GCWGC 1 cut(s) 721
TspDTI ATGAA 6 cut(s) 296, 590, 594, 606, 711, 836
TspGWI ACGGA 3 cut(s) 42, 82, 300
TspRI CASTG 1 cut(s) 192
Vha464I CTTAAG 1 cut(s) 476
VpaK11BI GGWCC 1 cut(s) 458
XceI RCATGY 1 cut(s) 233
XmaJI CCTAGG 1 cut(s) 461
XmnI GAANNNNTTC 1 cut(s) 597
XspI CTAG 4 cut(s) 234, 455, 462, 608
ZrmI AGTACT 1 cut(s) 669
Zsp2I ATGCAT 1 cut(s) 202
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.