AT4G26555

Peptidyl-prolyl cis-trans isomerase

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
arabidopsis_thaliana
4
OG0006742
Physical Location & Seq
Reverse (-)
13404430 .. 13406259
1830 bp
Loading structure...
UTR
Exon/CDS
Intron
AT4G26555.2

Sequence Viewer

Length: 624 bp
ATGGCGATGGCTATGGAGATTTCTCTTCCTTTCGTTGGATCATCCATGGCCTTAAGCGCGGGAAAATCAAGGAACAGCGTTTCTAGGATTAGTCGTGTTGGATTCTCTTCGGTCTCGGCTGTACATGTACCCAGAAGGATGTTTATGCAGCTGTCTGGATTTGGTTCGGTCTTGACGCTTCTGGATTTTCCTAGTTTAGCGGCGCCGGTTCCTCAGATGAAGGAACCTGAAGTGATCAGGACATTGAAACTCCCGAGTGGCGTGAGGTATCAAGAGATAATTGAAGGTGAAGGACGAGAAGCTCATGAAGGGGACCTGGTCGAACTAAACTATGTGTGTCGGCGTGCAAATGGATATTTCGTTCATAGCACGGTGGATCAATTCAGTGGTGAAAGCTCTCCTGTCAAACTTATTCTCGATGAAAACGACGTAATTGAGGGCTTGAAAGAAGTCTTGGTGGGCATGAAAGCTGGAGGGAAGCGTAGGGCACTGATACCTCCATCAGTAGGGTACATAAACGAGACATTGAAGCCAATCCCCGAGGAGTTTGGACCACGACGCAGCCTTCTATCGCATGCGAACGAGCCTCTGGTCTTTGAAATCCAGCTCTTGAAAGTATTATGA
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
GO:0005575 GO:0005622 GO:0005623 GO:0005737 GO:0009507 GO:0009536 GO:0043226 GO:0043227 GO:0043229 GO:0043231 GO:0044424 GO:0044444 GO:0044464
KEGG Pathways
Metabolic & Signaling
No pathways identified.
Pfam Domains
Protein Families
FKBP_C

Protein Analysis

207

Amino Acids

22.69

Weight (kDa)

6.92

Isoelectric Point (pI)

51.66

Instability Index
Protein Domains (Pfam)
Domain Name Pfam ID Position E-value Description
FKBP_C PF00254 53 - 158 5.9e-18 FKBP-type peptidyl-prolyl cis-trans isomerase
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
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Publication-ready
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Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AccB1I GGYRCC 1 cut(s) 202
AccII CGCG 1 cut(s) 59
AciI CCGC 2 cut(s) 59, 200
AclWI GGATC 2 cut(s) 46, 384
AcuI CTGAAG 1 cut(s) 249
AcyI GRCGYC 1 cut(s) 203
AfaI GTAC 3 cut(s) 123, 129, 512
AfiI CCNNNNNNNGG 2 cut(s) 35, 506
AflII CTTAAG 1 cut(s) 52
AflIII ACRYGT 1 cut(s) 124
AgsI TTSAA 6 cut(s) 247, 284, 445, 529, 599, 613
AjnI CCWGG 1 cut(s) 315
AjuI GAANNNNNNNTTGG 2 cut(s) 437, 469
AloI GAACNNNNNNTCC 2 cut(s) 345, 377
AluBI AGCT 5 cut(s) 151, 302, 396, 470, 607
AluI AGCT 5 cut(s) 151, 302, 396, 470, 607
Alw26I GTCTC 2 cut(s) 118, 515
AlwI GGATC 2 cut(s) 46, 384
Ama87I CYCGRG 2 cut(s) 253, 539
AoxI GGCC 1 cut(s) 48
ApeKI GCWGC 2 cut(s) 148, 561
AspLEI GCGC 2 cut(s) 59, 205
AspS9I GGNCC 2 cut(s) 313, 551
AsuHPI GGTGA 2 cut(s) 299, 401
AvaI CYCGRG 2 cut(s) 253, 539
AvaII GGWCC 2 cut(s) 313, 551
BaeGI GKGCMC 1 cut(s) 490
BanI GGYRCC 1 cut(s) 202
BbvI GCAGC 2 cut(s) 160, 573
BccI CCATC 1 cut(s) 508
BciT130I CCWGG 1 cut(s) 317
BclI TGATCA 1 cut(s) 234
BcoDI GTCTC 2 cut(s) 118, 515
BfaI CTAG 2 cut(s) 84, 192
BfoI RGCGCY 1 cut(s) 206
BfrI CTTAAG 1 cut(s) 52
BisI GCNGC 3 cut(s) 149, 201, 562
BlsI GCNGC 3 cut(s) 150, 202, 563
Bme1390I CCNGG 1 cut(s) 317
Bme18I GGWCC 2 cut(s) 313, 551
BmeT110I CYCGRG 2 cut(s) 253, 539
BmgT120I GGNCC 2 cut(s) 313, 551
BmiI GGNNCC 4 cut(s) 204, 210, 225, 314
BmrFI CCNGG 1 cut(s) 317
BpmI CTGGAG 1 cut(s) 492
BsaHI GRCGYC 1 cut(s) 203
BsaI GGTCTC 1 cut(s) 118
BsaJI CCNNGG 2 cut(s) 45, 540
Bsc4I CCNNNNNNNGG 2 cut(s) 35, 506
Bse118I RCCGGY 1 cut(s) 205
BseBI CCWGG 1 cut(s) 317
BseDI CCNNGG 2 cut(s) 45, 540
BseGI GGATG 2 cut(s) 41, 144
BseLI CCNNNNNNNGG 2 cut(s) 35, 506
BseMII CTCAG 1 cut(s) 227
BseRI GAGGAG 1 cut(s) 557
BseSI GKGCMC 1 cut(s) 490
BseXI GCAGC 2 cut(s) 160, 573
Bsh1236I CGCG 1 cut(s) 59
BshFI GGCC 1 cut(s) 50
BshNI GGYRCC 1 cut(s) 202
BsiHKCI CYCGRG 2 cut(s) 253, 539
BsiSI CCGG 1 cut(s) 206
BslFI GGGAC 1 cut(s) 326
BslI CCNNNNNNNGG 2 cut(s) 35, 506
BsmAI GTCTC 2 cut(s) 118, 515
BsmFI GGGAC 1 cut(s) 326
BsnI GGCC 1 cut(s) 50
Bso31I GGTCTC 1 cut(s) 118
BsoBI CYCGRG 2 cut(s) 253, 539
Bsp1286I GDGCHC 1 cut(s) 490
Bsp1407I TGTACA 1 cut(s) 121
Bsp143I GATC 3 cut(s) 38, 234, 376
Bsp19I CCATGG 1 cut(s) 45
BspACI CCGC 2 cut(s) 59, 200
BspANI GGCC 1 cut(s) 50
BspCNI CTCAG 1 cut(s) 226
BspFNI CGCG 1 cut(s) 59
BspHI TCATGA 1 cut(s) 304
BspLI GGNNCC 4 cut(s) 204, 210, 225, 314
BspPI GGATC 2 cut(s) 46, 384
BspT107I GGYRCC 1 cut(s) 202
BspTI CTTAAG 1 cut(s) 52
BspTNI GGTCTC 1 cut(s) 118
BsrFI RCCGGY 1 cut(s) 205
BsrGI TGTACA 1 cut(s) 121
BssAI RCCGGY 1 cut(s) 205
BssECI CCNNGG 2 cut(s) 45, 540
BssMI GATC 3 cut(s) 38, 234, 376
BssNI GRCGYC 1 cut(s) 203
BssT1I CCWWGG 1 cut(s) 45
Bst2UI CCWGG 1 cut(s) 317
Bst4CI ACNGT 1 cut(s) 373
Bst6I CTCTTC 2 cut(s) 30, 112
BstACI GRCGYC 1 cut(s) 203
BstAFI CTTAAG 1 cut(s) 52
BstAUI TGTACA 1 cut(s) 121
BstC8I GCNNGC 2 cut(s) 345, 576
BstDEI CTNAG 1 cut(s) 213
BstDSI CCRYGG 1 cut(s) 45
BstF5I GGATG 2 cut(s) 41, 144
BstFNI CGCG 1 cut(s) 59
BstH2I RGCGCY 1 cut(s) 206
BstHHI GCGC 2 cut(s) 59, 205
BstKTI GATC 3 cut(s) 41, 237, 379
BstMAI GTCTC 2 cut(s) 118, 515
BstMBI GATC 3 cut(s) 38, 234, 376
BstMWI GCNNNNNNNGC 1 cut(s) 56
BstNI CCWGG 1 cut(s) 317
BstNSI RCATGY 2 cut(s) 128, 578
BstSCI CCNGG 1 cut(s) 315
BstSLI GKGCMC 1 cut(s) 490
BstUI CGCG 1 cut(s) 59
BstV1I GCAGC 2 cut(s) 160, 573
BsuRI GGCC 1 cut(s) 50
BtgI CCRYGG 1 cut(s) 45
BtgZI GCGATG 1 cut(s) 20
BtsCI GGATG 2 cut(s) 41, 144
BtsIMutI CAGTG 2 cut(s) 391, 488
Cac8I GCNNGC 2 cut(s) 345, 576
CciI TCATGA 1 cut(s) 304
CfoI GCGC 2 cut(s) 59, 205
Cfr10I RCCGGY 1 cut(s) 205
Cfr13I GGNCC 2 cut(s) 313, 551
CseI GACGC 2 cut(s) 184, 567
CsiI ACCWGGT 1 cut(s) 315
Csp6I GTAC 3 cut(s) 122, 128, 511
CviAII CATG 5 cut(s) 46, 125, 305, 463, 575
CviQI GTAC 3 cut(s) 122, 128, 511
DdeI CTNAG 1 cut(s) 213
DinI GGCGCC 1 cut(s) 204
DpnI GATC 3 cut(s) 40, 236, 378
DpnII GATC 3 cut(s) 38, 234, 376
Eam1104I CTCTTC 2 cut(s) 30, 112
EarI CTCTTC 2 cut(s) 30, 112
Eco130I CCWWGG 1 cut(s) 45
Eco31I GGTCTC 1 cut(s) 118
Eco47I GGWCC 2 cut(s) 313, 551
Eco57I CTGAAG 1 cut(s) 249
Eco88I CYCGRG 2 cut(s) 253, 539
EcoO109I RGGNCCY 1 cut(s) 313
EcoRII CCWGG 1 cut(s) 315
EcoT14I CCWWGG 1 cut(s) 45
EgeI GGCGCC 1 cut(s) 204
EheI GGCGCC 1 cut(s) 204
ErhI CCWWGG 1 cut(s) 45
FaeI CATG 5 cut(s) 49, 128, 308, 466, 578
FaqI GGGAC 1 cut(s) 326
FatI CATG 5 cut(s) 45, 124, 304, 462, 574
FauI CCCGC 1 cut(s) 52
FbaI TGATCA 1 cut(s) 234
Fnu4HI GCNGC 3 cut(s) 149, 201, 562
FokI GGATG 2 cut(s) 28, 151
Fsp4HI GCNGC 3 cut(s) 149, 201, 562
FspBI CTAG 2 cut(s) 84, 192
GlaI GCGC 2 cut(s) 58, 204
GluI GCNGC 3 cut(s) 149, 201, 562
GsuI CTGGAG 1 cut(s) 492
HaeII RGCGCY 1 cut(s) 206
HaeIII GGCC 1 cut(s) 50
HapII CCGG 1 cut(s) 206
HgaI GACGC 2 cut(s) 184, 567
HhaI GCGC 2 cut(s) 59, 205
Hin1I GRCGYC 1 cut(s) 203
Hin1II CATG 5 cut(s) 49, 128, 308, 466, 578
Hin6I GCGC 2 cut(s) 57, 203
HinP1I GCGC 2 cut(s) 57, 203
HinfI GANTC 1 cut(s) 102
HpaII CCGG 1 cut(s) 206
HphI GGTGA 2 cut(s) 299, 401
Hpy188I TCNGA 1 cut(s) 216
Hpy188III TCNNGA 9 cut(s) 156, 172, 182, 238, 253, 272, 305, 416, 610
Hpy99I CGWCG 2 cut(s) 431, 561
HpyAV CCTTC 6 cut(s) 129, 214, 278, 284, 302, 575
HpyCH4III ACNGT 1 cut(s) 373
HpyCH4IV ACGT 1 cut(s) 429
HpyCH4V TGCA 2 cut(s) 148, 347
HpyF10VI GCNNNNNNNGC 1 cut(s) 56
HpyF3I CTNAG 1 cut(s) 213
HpySE526I ACGT 1 cut(s) 429
Hsp92I GRCGYC 1 cut(s) 203
Hsp92II CATG 5 cut(s) 49, 128, 308, 466, 578
HspAI GCGC 2 cut(s) 57, 203
KasI GGCGCC 1 cut(s) 202
Ksp22I TGATCA 1 cut(s) 234
Kzo9I GATC 3 cut(s) 38, 234, 376
Lsp1109I GCAGC 2 cut(s) 160, 573
MabI ACCWGGT 1 cut(s) 315
MaeI CTAG 2 cut(s) 84, 192
MaeII ACGT 1 cut(s) 429
MalI GATC 3 cut(s) 40, 236, 378
MboI GATC 3 cut(s) 38, 234, 376
MboII GAAGA 2 cut(s) 17, 99
MhlI GDGCHC 1 cut(s) 490
MluCI AATT 3 cut(s) 279, 380, 432
Mly113I GGCGCC 1 cut(s) 203
MmeI TCCRAC 2 cut(s) 16, 79
MnlI CCTC 7 cut(s) 222, 258, 430, 467, 507, 535, 597
MseI TTAA 1 cut(s) 53
MspA1I CMGCKG 1 cut(s) 151
MspCI CTTAAG 1 cut(s) 52
MspI CCGG 1 cut(s) 206
MspR9I CCNGG 1 cut(s) 317
MvaI CCWGG 1 cut(s) 317
MvnI CGCG 1 cut(s) 59
MwoI GCNNNNNNNGC 1 cut(s) 56
NarI GGCGCC 1 cut(s) 203
NcoI CCATGG 1 cut(s) 45
NdeII GATC 3 cut(s) 38, 234, 376
NlaIII CATG 5 cut(s) 49, 128, 308, 466, 578
NlaIV GGNNCC 4 cut(s) 204, 210, 225, 314
NmeAIII GCCGAG 1 cut(s) 95
NspI RCATGY 2 cut(s) 128, 578
PaeI GCATGC 1 cut(s) 578
PagI TCATGA 1 cut(s) 304
PciI ACATGT 1 cut(s) 124
PcsI WCGNNNNNNNCGW 1 cut(s) 423
PfeI GAWTC 1 cut(s) 102
PflFI GACNNNGTC 1 cut(s) 317
PkrI GCNGC 3 cut(s) 150, 202, 563
PluTI GGCGCC 1 cut(s) 206
PpuMI RGGWCCY 1 cut(s) 313
PscI ACATGT 1 cut(s) 124
Psp5II RGGWCCY 1 cut(s) 313
Psp6I CCWGG 1 cut(s) 315
PspGI CCWGG 1 cut(s) 315
PspN4I GGNNCC 4 cut(s) 204, 210, 225, 314
PspPI GGNCC 2 cut(s) 313, 551
PspPPI RGGWCCY 1 cut(s) 313
PsyI GACNNNGTC 1 cut(s) 317
PvuII CAGCTG 1 cut(s) 151
RsaI GTAC 3 cut(s) 123, 129, 512
RsaNI GTAC 3 cut(s) 122, 128, 511
SaqAI TTAA 1 cut(s) 53
SatI GCNGC 3 cut(s) 149, 201, 562
Sau3AI GATC 3 cut(s) 38, 234, 376
Sau96I GGNCC 2 cut(s) 313, 551
ScrFI CCNGG 1 cut(s) 317
SduI GDGCHC 1 cut(s) 490
SexAI ACCWGGT 1 cut(s) 315
SfoI GGCGCC 1 cut(s) 204
SinI GGWCC 2 cut(s) 313, 551
SmlI CTYRAG 1 cut(s) 52
SmoI CTYRAG 1 cut(s) 52
SphI GCATGC 1 cut(s) 578
Sse9I AATT 3 cut(s) 279, 380, 432
SsiI CCGC 2 cut(s) 59, 200
SspDI GGCGCC 1 cut(s) 202
SspMI CTAG 2 cut(s) 84, 192
StyD4I CCNGG 1 cut(s) 315
StyI CCWWGG 1 cut(s) 45
TaaI ACNGT 1 cut(s) 373
TaiI ACGT 1 cut(s) 432
TaqI TCGA 2 cut(s) 321, 417
TaqII GACCGA 2 cut(s) 100, 157
TasI AATT 3 cut(s) 279, 380, 432
TatI WGTACW 1 cut(s) 121
TauI GCSGC 1 cut(s) 203
TfiI GAWTC 1 cut(s) 102
Tru1I TTAA 1 cut(s) 53
Tru9I TTAA 1 cut(s) 53
TscAI CASTG 2 cut(s) 391, 495
TseI GCWGC 2 cut(s) 148, 561
TspDTI ATGAA 5 cut(s) 233, 321, 353, 435, 479
TspRI CASTG 2 cut(s) 391, 495
Tth111I GACNNNGTC 1 cut(s) 317
Vha464I CTTAAG 1 cut(s) 52
VpaK11BI GGWCC 2 cut(s) 313, 551
XceI RCATGY 2 cut(s) 128, 578
XspI CTAG 2 cut(s) 84, 192
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.