MD03G1036700.v1.1

Peptidyl-prolyl cis-trans isomerase

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
malus_domestica
Chr03
OG0006742
Physical Location & Seq
Forward (+)
2911302 .. 2917753
6452 bp
Loading structure...
UTR
Exon/CDS
Intron
MD03G1036700.v1.1.491

Sequence Viewer

Length: 633 bp
ATGGAAGCTCTCTCATTCCAAACCCTACTTCAGCTCCCATCGGCTCCCAGAAAAACACTAAGTTATGTTGAGAAAGATAAATCTAAGAACAATGTGGCTAAGAACTTGCATGAACGAGTTCACTCATCCACGGCGAAAAGATTACCAAGAAGGCTGTTTTTGCAGTACATTGGATTCTGCCCAGTTCTATTCTCAAATCCTGTTTTTGCTGCGCCAATGCCAGAGATGAAGGAGCCTGAAATCATTCGGACCGTAAAGCTTCCCAGCGGCGTGAGGGTTCAAGAGATTGTTGAAGGTCAAGGACCAATAGCCCATGAAGGAGATTTGGTTGAAATTAACTACGTTTGCAGGCGCACAAACGGATATTTTGTTCATAGCACTGTTGATCAATTCAGTGGAGAAAGCGCACCGGTGATACTCCCTTTGGATGAAAAACAGATTATAGAAGGCTTGAAGGAGGTTCTGGTTGGCATGAAAACTGGAGGAAAGAGGAGAGCTCTGATACCTCCTTATGTGGGATACACGAACGAGAACTTAAAACCAATACCGGAAGAGTTTGGCCCTCGGCGTAGCCTCTTGTCGCATGTAAACGAGCCTTTGATATTCGAGGTGCAACTCTTGAAAGTACTATGA
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
GO:0005575 GO:0005622 GO:0005623 GO:0005737 GO:0009507 GO:0009536 GO:0043226 GO:0043227 GO:0043229 GO:0043231 GO:0044424 GO:0044444 GO:0044464
KEGG Pathways
Metabolic & Signaling
No pathways identified.
Pfam Domains
Protein Families
FKBP_C

Protein Analysis

211

Amino Acids

23.66

Weight (kDa)

9.04

Isoelectric Point (pI)

47.84

Instability Index
Protein Domains (Pfam)
Domain Name Pfam ID Position E-value Description
FKBP_C PF00254 104 - 207 8.2e-17 FKBP-type peptidyl-prolyl cis-trans isomerase
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
Loading...
Style Settings
Image
Tree File
Tip: Beautify your tree with professional tools

Download the Full Tree (.nwk) file, then upload it to any of the following tools to customize colors, fonts, annotations, clades, and branch support.

Publication-ready
iTOL Interactive Tree Of Life · Most popular EvolView Flexible annotations MEGA Desktop phylogenetics suite FigTree Desktop tree editor

Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AciI CCGC 1 cut(s) 267
AcuI CTGAAG 1 cut(s) 14
AfaI GTAC 2 cut(s) 167, 627
AfiI CCNNNNNNNGG 1 cut(s) 515
AgeI ACCGGT 1 cut(s) 409
AgsI TTSAA 5 cut(s) 281, 293, 332, 454, 622
AjuI GAANNNNNNNTTGG 2 cut(s) 12, 44
AloI GAACNNNNNNTCC 2 cut(s) 354, 386
AluBI AGCT 4 cut(s) 8, 34, 259, 497
AluI AGCT 4 cut(s) 8, 34, 259, 497
Alw21I GWGCWC 1 cut(s) 499
AoxI GGCC 1 cut(s) 559
ApeKI GCWGC 1 cut(s) 209
AsiGI ACCGGT 1 cut(s) 409
Asp700I GAANNNNTTC 2 cut(s) 117, 243
AspLEI GCGC 3 cut(s) 214, 354, 407
AspS9I GGNCC 3 cut(s) 249, 302, 560
AsuHPI GGTGA 1 cut(s) 424
AvaII GGWCC 2 cut(s) 249, 302
BanII GRGCYC 1 cut(s) 499
Bbv12I GWGCWC 1 cut(s) 499
BbvI GCAGC 1 cut(s) 196
BccI CCATC 1 cut(s) 46
BceAI ACGGC 1 cut(s) 147
BciVI GTATCC 1 cut(s) 512
BclI TGATCA 1 cut(s) 385
BfuI GTATCC 1 cut(s) 512
BisI GCNGC 2 cut(s) 210, 268
BlsI GCNGC 2 cut(s) 211, 269
BmcAI AGTACT 1 cut(s) 627
Bme18I GGWCC 2 cut(s) 249, 302
BmgT120I GGNCC 3 cut(s) 249, 302, 560
BmiI GGNNCC 2 cut(s) 45, 234
BmrI ACTGGG 1 cut(s) 176
BmuI ACTGGG 1 cut(s) 176
BplI GAGNNNNNCTC 2 cut(s) 481, 513
BpmI CTGGAG 1 cut(s) 501
BsaJI CCNNGG 2 cut(s) 129, 563
BsaWI WCCGGW 2 cut(s) 409, 547
BsaXI ACNNNNNCTCC 4 cut(s) 18, 48, 312, 342
Bsc4I CCNNNNNNNGG 1 cut(s) 515
Bse118I RCCGGY 1 cut(s) 409
Bse1I ACTGG 2 cut(s) 182, 484
BseDI CCNNGG 2 cut(s) 129, 563
BseGI GGATG 2 cut(s) 125, 433
BseLI CCNNNNNNNGG 1 cut(s) 515
BseNI ACTGG 2 cut(s) 182, 484
BseRI GAGGAG 1 cut(s) 505
BseXI GCAGC 1 cut(s) 196
BseYI CCCAGC 1 cut(s) 263
BshFI GGCC 1 cut(s) 561
BshTI ACCGGT 1 cut(s) 409
BsiHKAI GWGCWC 1 cut(s) 499
BsiSI CCGG 2 cut(s) 410, 548
BslI CCNNNNNNNGG 1 cut(s) 515
BsnI GGCC 1 cut(s) 561
Bsp1286I GDGCHC 1 cut(s) 499
Bsp143I GATC 1 cut(s) 385
BspACI CCGC 1 cut(s) 267
BspANI GGCC 1 cut(s) 561
BspLI GGNNCC 2 cut(s) 45, 234
BsrFI RCCGGY 1 cut(s) 409
BsrI ACTGG 2 cut(s) 182, 484
BssAI RCCGGY 1 cut(s) 409
BssECI CCNNGG 2 cut(s) 129, 563
BssMI GATC 1 cut(s) 385
Bst4CI ACNGT 2 cut(s) 253, 382
Bst6I CTCTTC 1 cut(s) 546
BstC8I GCNNGC 1 cut(s) 350
BstDEI CTNAG 3 cut(s) 59, 84, 99
BstDSI CCRYGG 1 cut(s) 129
BstF5I GGATG 2 cut(s) 125, 433
BstHHI GCGC 3 cut(s) 214, 354, 407
BstKTI GATC 1 cut(s) 388
BstMBI GATC 1 cut(s) 385
BstMWI GCNNNNNNNGC 1 cut(s) 160
BstNSI RCATGY 1 cut(s) 587
BstV1I GCAGC 1 cut(s) 196
BsuI GTATCC 1 cut(s) 512
BsuRI GGCC 1 cut(s) 561
BtgI CCRYGG 1 cut(s) 129
BtsCI GGATG 2 cut(s) 125, 433
BtsIMutI CAGTG 2 cut(s) 378, 400
Cac8I GCNNGC 1 cut(s) 350
CfoI GCGC 3 cut(s) 214, 354, 407
Cfr10I RCCGGY 1 cut(s) 409
Cfr13I GGNCC 3 cut(s) 249, 302, 560
CpoI CGGWCCG 1 cut(s) 249
Csp6I GTAC 2 cut(s) 166, 626
CspAI ACCGGT 1 cut(s) 409
CspI CGGWCCG 1 cut(s) 249
CviAII CATG 4 cut(s) 110, 314, 472, 584
CviQI GTAC 2 cut(s) 166, 626
DdeI CTNAG 3 cut(s) 59, 84, 99
DpnI GATC 1 cut(s) 387
DpnII GATC 1 cut(s) 385
Eam1104I CTCTTC 1 cut(s) 546
EarI CTCTTC 1 cut(s) 546
Ecl136II GAGCTC 1 cut(s) 497
Eco24I GRGCYC 1 cut(s) 499
Eco47I GGWCC 2 cut(s) 249, 302
Eco53kI GAGCTC 1 cut(s) 497
Eco57I CTGAAG 1 cut(s) 14
EcoICRI GAGCTC 1 cut(s) 497
EcoT38I GRGCYC 1 cut(s) 499
FaeI CATG 4 cut(s) 113, 317, 475, 587
FaiI YATR 9 cut(s) 66, 111, 315, 375, 443, 473, 513, 585, 631
FatI CATG 4 cut(s) 109, 313, 471, 583
FbaI TGATCA 1 cut(s) 385
Fnu4HI GCNGC 2 cut(s) 210, 268
FokI GGATG 2 cut(s) 112, 440
FriOI GRGCYC 1 cut(s) 499
Fsp4HI GCNGC 2 cut(s) 210, 268
GlaI GCGC 3 cut(s) 213, 353, 406
GluI GCNGC 2 cut(s) 210, 268
GsaI CCCAGC 1 cut(s) 267
GsuI CTGGAG 1 cut(s) 501
HaeIII GGCC 1 cut(s) 561
HapII CCGG 2 cut(s) 410, 548
HhaI GCGC 3 cut(s) 214, 354, 407
Hin1II CATG 4 cut(s) 113, 317, 475, 587
Hin6I GCGC 3 cut(s) 212, 352, 405
HinP1I GCGC 3 cut(s) 212, 352, 405
HindIII AAGCTT 1 cut(s) 257
HinfI GANTC 1 cut(s) 174
HpaII CCGG 2 cut(s) 410, 548
HphI GGTGA 1 cut(s) 424
Hpy166II GTNNAC 2 cut(s) 121, 589
Hpy188I TCNGA 2 cut(s) 249, 501
Hpy188III TCNNGA 2 cut(s) 281, 619
Hpy8I GTNNAC 2 cut(s) 121, 589
HpyAV CCTTC 6 cut(s) 144, 223, 287, 311, 440, 448
HpyCH4III ACNGT 2 cut(s) 253, 382
HpyCH4IV ACGT 1 cut(s) 342
HpyCH4V TGCA 4 cut(s) 109, 163, 348, 613
HpyF10VI GCNNNNNNNGC 1 cut(s) 160
HpyF3I CTNAG 3 cut(s) 59, 84, 99
HpySE526I ACGT 1 cut(s) 342
Hsp92II CATG 4 cut(s) 113, 317, 475, 587
HspAI GCGC 3 cut(s) 212, 352, 405
Ksp22I TGATCA 1 cut(s) 385
Kzo9I GATC 1 cut(s) 385
LmnI GCTCC 3 cut(s) 39, 49, 232
Lsp1109I GCAGC 1 cut(s) 196
MaeII ACGT 1 cut(s) 342
MalI GATC 1 cut(s) 387
MboI GATC 1 cut(s) 385
MboII GAAGA 1 cut(s) 563
MhlI GDGCHC 1 cut(s) 499
MluCI AATT 2 cut(s) 333, 389
MnlI CCTC 8 cut(s) 267, 451, 476, 483, 516, 573, 584, 601
MroXI GAANNNNTTC 2 cut(s) 117, 243
MseI TTAA 2 cut(s) 336, 536
MspA1I CMGCKG 1 cut(s) 267
MspI CCGG 2 cut(s) 410, 548
MwoI GCNNNNNNNGC 1 cut(s) 160
NdeII GATC 1 cut(s) 385
NlaIII CATG 4 cut(s) 113, 317, 475, 587
NlaIV GGNNCC 2 cut(s) 45, 234
NmeAIII GCCGAG 1 cut(s) 544
NspI RCATGY 1 cut(s) 587
PdmI GAANNNNTTC 2 cut(s) 117, 243
PfeI GAWTC 1 cut(s) 174
PinAI ACCGGT 1 cut(s) 409
PkrI GCNGC 2 cut(s) 211, 269
Psp124BI GAGCTC 1 cut(s) 499
PspFI CCCAGC 1 cut(s) 263
PspN4I GGNNCC 2 cut(s) 45, 234
PspPI GGNCC 3 cut(s) 249, 302, 560
RsaI GTAC 2 cut(s) 167, 627
RsaNI GTAC 2 cut(s) 166, 626
Rsr2I CGGWCCG 1 cut(s) 249
RsrII CGGWCCG 1 cut(s) 249
SacI GAGCTC 1 cut(s) 499
SaqAI TTAA 2 cut(s) 336, 536
SatI GCNGC 2 cut(s) 210, 268
Sau3AI GATC 1 cut(s) 385
Sau96I GGNCC 3 cut(s) 249, 302, 560
ScaI AGTACT 1 cut(s) 627
SduI GDGCHC 1 cut(s) 499
SetI ASST 9 cut(s) 10, 36, 261, 298, 345, 462, 499, 508, 612
SgrAI CRCCGGYG 1 cut(s) 409
SinI GGWCC 2 cut(s) 249, 302
Sse9I AATT 2 cut(s) 333, 389
SsiI CCGC 1 cut(s) 267
SstI GAGCTC 1 cut(s) 499
TaaI ACNGT 2 cut(s) 253, 382
TaiI ACGT 1 cut(s) 345
TaqI TCGA 1 cut(s) 606
TasI AATT 2 cut(s) 333, 389
TatI WGTACW 2 cut(s) 165, 625
TauI GCSGC 1 cut(s) 270
TfiI GAWTC 1 cut(s) 174
Tru1I TTAA 2 cut(s) 336, 536
Tru9I TTAA 2 cut(s) 336, 536
TscAI CASTG 2 cut(s) 385, 400
TseI GCWGC 1 cut(s) 209
TspDTI ATGAA 6 cut(s) 126, 242, 330, 362, 444, 488
TspGWI ACGGA 1 cut(s) 375
TspRI CASTG 2 cut(s) 385, 400
VpaK11BI GGWCC 2 cut(s) 249, 302
XceI RCATGY 1 cut(s) 587
XmnI GAANNNNTTC 2 cut(s) 117, 243
ZrmI AGTACT 1 cut(s) 627
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.