FvH4_3g42230

Peptidyl-prolyl cis-trans isomerase

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
fragaria_vesca
Fvb3
OG0006742
Physical Location & Seq
Reverse (-)
35261802 .. 35264299
2498 bp
Loading structure...
UTR
Exon/CDS
Intron
FvH4_3g42230.t4

Sequence Viewer

Length: 621 bp
ATGGAAACTCTCTCATTTCCAAGCTTGCTTCAACTCCCATGTTCTCCCAAGAATCCAAGAGTTTTTGTAGATAAAGAAGCAGGCAAGAACACTGTGGCTGCTAAGAACTTGCATGAAGGATTTCCGAAAAGATTGCCAAGGAGGCTGCTTTTGCAGTTCATGGGGTTCTTCCCAATTCTATCACATCCTGTTTTGGCTGCTCCAATGCCGGAGATGAAGGAACCTGAAGTGATTCCGACATTGAAGCTTCCCAGTGGTGTGAGGATCCAAGAGATTGTTGAAGGGCAAGGACCAGCAGCCACCGAAGGAGATCTAGTTGAAATTAACTATGTATGCCGCCGCACAAATGGCTACTTTGTTCATAGCACCGTTGATCAATTCAGTGGAGAAAGCACACCTGTGAGACTTCCTTTGGATGAAAAACAGATTATAAAAGGTTTGGAGGAGGTTCTGGTTGGCATGAAAATTGGAGGAAAGAGAAGAGCTTTGATACCTCCTTCTGTGGGATATACAAATGAAAGCTTACAACCAATTCCTGAAGAGTTCGGCCCTCGACGCAGCCTCATGTCTCATGTAAATGAACCTTTGATATTTGAGGTGCAGCTCTTGAAGCTACTATAA
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
GO:0005575 GO:0005622 GO:0005623 GO:0005737 GO:0009507 GO:0009536 GO:0043226 GO:0043227 GO:0043229 GO:0043231 GO:0044424 GO:0044444 GO:0044464
KEGG Pathways
Metabolic & Signaling
No pathways identified.
Pfam Domains
Protein Families
FKBP_C

Protein Analysis

207

Amino Acids

22.96

Weight (kDa)

7.79

Isoelectric Point (pI)

54.05

Instability Index
Protein Domains (Pfam)
Domain Name Pfam ID Position E-value Description
FKBP_C PF00254 99 - 158 2.6e-09 FKBP-type peptidyl-prolyl cis-trans isomerase
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
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Publication-ready
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Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AanI TTATAA 1 cut(s) 431
AciI CCGC 2 cut(s) 337, 340
AclWI GGATC 2 cut(s) 259, 272
AcuI CTGAAG 2 cut(s) 246, 558
AfiI CCNNNNNNNGG 1 cut(s) 503
AgsI TTSAA 5 cut(s) 32, 244, 281, 320, 610
AleI CACNNNNGTG 1 cut(s) 398
AluBI AGCT 6 cut(s) 24, 247, 485, 522, 604, 613
AluI AGCT 6 cut(s) 24, 247, 485, 522, 604, 613
Alw26I GTCTC 2 cut(s) 397, 573
AlwI GGATC 2 cut(s) 259, 272
AoxI GGCC 1 cut(s) 547
ApeKI GCWGC 6 cut(s) 98, 145, 197, 296, 558, 601
Asp700I GAANNNNTTC 2 cut(s) 120, 231
AspS9I GGNCC 2 cut(s) 290, 548
AvaII GGWCC 1 cut(s) 290
BamHI GGATCC 1 cut(s) 264
BbvI GCAGC 6 cut(s) 85, 132, 184, 308, 570, 613
BcgI CGANNNNNNTGC 2 cut(s) 115, 149
BclI TGATCA 1 cut(s) 373
BcoDI GTCTC 2 cut(s) 397, 573
BfaI CTAG 1 cut(s) 314
BglI GCCNNNNNGGC 1 cut(s) 142
BglII AGATCT 1 cut(s) 310
BisI GCNGC 8 cut(s) 99, 146, 198, 297, 337, 340, 559, 602
BlsI GCNGC 8 cut(s) 100, 147, 199, 298, 338, 341, 560, 603
Bme18I GGWCC 1 cut(s) 290
BmgT120I GGNCC 2 cut(s) 290, 548
BmiI GGNNCC 2 cut(s) 222, 266
BmrI ACTGGG 1 cut(s) 246
BmuI ACTGGG 1 cut(s) 246
BsaJI CCNNGG 1 cut(s) 137
BsaXI ACNNNNNCTCC 2 cut(s) 300, 330
Bsc4I CCNNNNNNNGG 1 cut(s) 503
Bse1I ACTGG 1 cut(s) 252
BseDI CCNNGG 1 cut(s) 137
BseGI GGATG 2 cut(s) 184, 421
BseLI CCNNNNNNNGG 1 cut(s) 503
BseNI ACTGG 1 cut(s) 252
BseRI GAGGAG 1 cut(s) 458
BseXI GCAGC 6 cut(s) 85, 132, 184, 308, 570, 613
BsgI GTGCAG 1 cut(s) 620
BshFI GGCC 1 cut(s) 549
BsiSI CCGG 1 cut(s) 209
BslI CCNNNNNNNGG 1 cut(s) 503
BsmAI GTCTC 2 cut(s) 397, 573
BsnI GGCC 1 cut(s) 549
Bsp143I GATC 3 cut(s) 264, 310, 373
BspACI CCGC 2 cut(s) 337, 340
BspANI GGCC 1 cut(s) 549
BspLI GGNNCC 2 cut(s) 222, 266
BspPI GGATC 2 cut(s) 259, 272
BspQI GCTCTTC 1 cut(s) 475
BsrI ACTGG 1 cut(s) 252
BssECI CCNNGG 1 cut(s) 137
BssMI GATC 3 cut(s) 264, 310, 373
BssT1I CCWWGG 1 cut(s) 137
Bst4CI ACNGT 2 cut(s) 94, 370
Bst6I CTCTTC 2 cut(s) 475, 534
BstC8I GCNNGC 2 cut(s) 26, 82
BstDEI CTNAG 1 cut(s) 102
BstF5I GGATG 2 cut(s) 184, 421
BstKTI GATC 3 cut(s) 267, 313, 376
BstMAI GTCTC 2 cut(s) 397, 573
BstMBI GATC 3 cut(s) 264, 310, 373
BstMWI GCNNNNNNNGC 5 cut(s) 142, 151, 348, 555, 610
BstV1I GCAGC 6 cut(s) 85, 132, 184, 308, 570, 613
BstX2I RGATCY 2 cut(s) 264, 310
BstYI RGATCY 2 cut(s) 264, 310
BsuRI GGCC 1 cut(s) 549
BtsCI GGATG 2 cut(s) 184, 421
BtsIMutI CAGTG 3 cut(s) 90, 259, 388
Cac8I GCNNGC 2 cut(s) 26, 82
Cfr13I GGNCC 2 cut(s) 290, 548
CseI GACGC 1 cut(s) 564
CviAII CATG 6 cut(s) 39, 113, 160, 460, 565, 572
DdeI CTNAG 1 cut(s) 102
DpnI GATC 3 cut(s) 266, 312, 375
DpnII GATC 3 cut(s) 264, 310, 373
Eam1104I CTCTTC 2 cut(s) 475, 534
EarI CTCTTC 2 cut(s) 475, 534
Eco130I CCWWGG 1 cut(s) 137
Eco47I GGWCC 1 cut(s) 290
Eco57I CTGAAG 2 cut(s) 246, 558
EcoT14I CCWWGG 1 cut(s) 137
ErhI CCWWGG 1 cut(s) 137
FaeI CATG 6 cut(s) 42, 116, 163, 463, 568, 575
FatI CATG 6 cut(s) 38, 112, 159, 459, 564, 571
FbaI TGATCA 1 cut(s) 373
Fnu4HI GCNGC 8 cut(s) 99, 146, 198, 297, 337, 340, 559, 602
FokI GGATG 2 cut(s) 171, 428
Fsp4HI GCNGC 8 cut(s) 99, 146, 198, 297, 337, 340, 559, 602
FspBI CTAG 1 cut(s) 314
GluI GCNGC 8 cut(s) 99, 146, 198, 297, 337, 340, 559, 602
HaeIII GGCC 1 cut(s) 549
HapII CCGG 1 cut(s) 209
HgaI GACGC 1 cut(s) 564
Hin1II CATG 6 cut(s) 42, 116, 163, 463, 568, 575
HindIII AAGCTT 3 cut(s) 22, 245, 520
HinfI GANTC 2 cut(s) 52, 232
HpaII CCGG 1 cut(s) 209
Hpy188I TCNGA 2 cut(s) 126, 237
Hpy188III TCNNGA 2 cut(s) 536, 607
Hpy99I CGWCG 1 cut(s) 558
HpyAV CCTTC 5 cut(s) 110, 211, 275, 299, 507
HpyCH4III ACNGT 2 cut(s) 94, 370
HpyCH4V TGCA 3 cut(s) 112, 154, 601
HpyF10VI GCNNNNNNNGC 5 cut(s) 142, 151, 348, 555, 610
HpyF3I CTNAG 1 cut(s) 102
Hsp92II CATG 6 cut(s) 42, 116, 163, 463, 568, 575
Ksp22I TGATCA 1 cut(s) 373
Kzo9I GATC 3 cut(s) 264, 310, 373
LguI GCTCTTC 1 cut(s) 475
LmnI GCTCC 1 cut(s) 205
LpnPI CCDG 9 cut(s) 66, 201, 222, 237, 265, 306, 411, 437, 549
Lsp1109I GCAGC 6 cut(s) 85, 132, 184, 308, 570, 613
MaeI CTAG 1 cut(s) 314
MalI GATC 3 cut(s) 266, 312, 375
MboI GATC 3 cut(s) 264, 310, 373
MboII GAAGA 3 cut(s) 160, 492, 551
MflI RGATCY 2 cut(s) 264, 310
MluCI AATT 5 cut(s) 174, 321, 377, 465, 531
MmeI TCCRAC 1 cut(s) 260
MnlI CCTC 9 cut(s) 135, 255, 436, 439, 464, 504, 561, 572, 589
MroXI GAANNNNTTC 2 cut(s) 120, 231
MseI TTAA 1 cut(s) 324
MslI CAYNNNNRTG 2 cut(s) 398, 576
MspI CCGG 1 cut(s) 209
MwoI GCNNNNNNNGC 5 cut(s) 142, 151, 348, 555, 610
NdeII GATC 3 cut(s) 264, 310, 373
NlaIII CATG 6 cut(s) 42, 116, 163, 463, 568, 575
NlaIV GGNNCC 2 cut(s) 222, 266
OliI CACNNNNGTG 1 cut(s) 398
PciSI GCTCTTC 1 cut(s) 475
PdmI GAANNNNTTC 2 cut(s) 120, 231
PfeI GAWTC 2 cut(s) 52, 232
PkrI GCNGC 8 cut(s) 100, 147, 199, 298, 338, 341, 560, 603
PsiI TTATAA 1 cut(s) 431
PspN4I GGNNCC 2 cut(s) 222, 266
PspPI GGNCC 2 cut(s) 290, 548
PsuI RGATCY 2 cut(s) 264, 310
RseI CAYNNNNRTG 2 cut(s) 398, 576
SapI GCTCTTC 1 cut(s) 475
SaqAI TTAA 1 cut(s) 324
SatI GCNGC 8 cut(s) 99, 146, 198, 297, 337, 340, 559, 602
Sau3AI GATC 3 cut(s) 264, 310, 373
Sau96I GGNCC 2 cut(s) 290, 548
SinI GGWCC 1 cut(s) 290
SmiMI CAYNNNNRTG 2 cut(s) 398, 576
Sse9I AATT 5 cut(s) 174, 321, 377, 465, 531
SsiI CCGC 2 cut(s) 337, 340
SspMI CTAG 1 cut(s) 314
StyI CCWWGG 1 cut(s) 137
TaaI ACNGT 2 cut(s) 94, 370
TaqI TCGA 1 cut(s) 553
TasI AATT 5 cut(s) 174, 321, 377, 465, 531
TauI GCSGC 2 cut(s) 339, 342
TfiI GAWTC 2 cut(s) 52, 232
Tru1I TTAA 1 cut(s) 324
Tru9I TTAA 1 cut(s) 324
TscAI CASTG 3 cut(s) 97, 259, 388
TseI GCWGC 6 cut(s) 98, 145, 197, 296, 558, 601
TspDTI ATGAA 8 cut(s) 129, 148, 230, 350, 432, 476, 531, 594
TspRI CASTG 3 cut(s) 97, 259, 388
VpaK11BI GGWCC 1 cut(s) 290
XmnI GAANNNNTTC 2 cut(s) 120, 231
XspI CTAG 1 cut(s) 314
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.