RchiOBHm_Chr5g0075531

Peptidyl-prolyl cis-trans isomerase

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
rosa_chinensis
5
OG0006742
Physical Location & Seq
Reverse (-)
81327074 .. 81329905
2832 bp
Loading structure...
UTR
Exon/CDS
Intron
PRQ35024

Sequence Viewer

Length: 618 bp
ATGGAAACTCTCTCAGTTCCAAGCTTTCTTCAACTCCCATGTTCTCCCAAAAATCCAAGATATGTAGATAAAGAGCCACCCAAGAACGCTGTGGCTGCTAAGAATTTGCATGAAAGATTTCCCAAAAGATTACCAAGGAGGCTGCTTTTGCAGTTTATGGGGTTCTGCCCAATCCTATCACATCCTGTTTTGGCTGCACCAATGCCGGAGATGAAGGAACCTGAAGTGATTCGGACCTTAAAGCTTCCCAGTGGTGTGAGGATCCAAGAGATTGTTGAAGGGCAAGGACCAGCAGCCACCAAAGGAGATTTGGTTGAAATTAACTATGTATGCCGTCGCACAAATGGCTATTTTGTTCATAGCACTGTTGATCAATTCAATGGAGAAAGCACACCTGTGATACTTCCTTTGGACGAAAATCAGATTATAAAAGGCTTGGAGGAGGTTCTGGTCGGCATGAGAATCGGAGGAAAGAGGAGAGCATTGATACCTCCTTCTGTGGGATACACAAATGAAAGCTTACAACCAATTCCTGAAGAGTTTGGCCCTCGACGCAGCCTCTTGTCTCATGTAAATGAGCCTCTGATATTCGAGGTGCAGCTCTTGAAACTACTATGA
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
GO:0005575 GO:0005622 GO:0005623 GO:0005737 GO:0009507 GO:0009536 GO:0043226 GO:0043227 GO:0043229 GO:0043231 GO:0044424 GO:0044444 GO:0044464
KEGG Pathways
Metabolic & Signaling
No pathways identified.
Pfam Domains
Protein Families
FKBP_C

Protein Analysis

205

Amino Acids

22.99

Weight (kDa)

8.79

Isoelectric Point (pI)

51.98

Instability Index
Protein Domains (Pfam)
Domain Name Pfam ID Position E-value Description
FKBP_C PF00254 98 - 202 8.8e-18 FKBP-type peptidyl-prolyl cis-trans isomerase
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
Loading...
Style Settings
Image
Tree File
Tip: Beautify your tree with professional tools

Download the Full Tree (.nwk) file, then upload it to any of the following tools to customize colors, fonts, annotations, clades, and branch support.

Publication-ready
iTOL Interactive Tree Of Life · Most popular EvolView Flexible annotations MEGA Desktop phylogenetics suite FigTree Desktop tree editor

Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AanI TTATAA 1 cut(s) 428
AclWI GGATC 2 cut(s) 256, 269
AcsI RAATTY 1 cut(s) 103
AcuI CTGAAG 2 cut(s) 243, 555
AfiI CCNNNNNNNGG 1 cut(s) 500
AgsI TTSAA 5 cut(s) 32, 278, 317, 379, 607
AleI CACNNNNGTG 1 cut(s) 395
AluBI AGCT 4 cut(s) 24, 244, 519, 601
AluI AGCT 4 cut(s) 24, 244, 519, 601
Alw26I GTCTC 1 cut(s) 570
AlwI GGATC 2 cut(s) 256, 269
AoxI GGCC 1 cut(s) 544
ApeKI GCWGC 6 cut(s) 95, 142, 194, 293, 555, 598
ApoI RAATTY 1 cut(s) 103
Asp700I GAANNNNTTC 2 cut(s) 117, 228
AspS9I GGNCC 3 cut(s) 234, 287, 545
AvaII GGWCC 2 cut(s) 234, 287
BamHI GGATCC 1 cut(s) 261
BbvI GCAGC 6 cut(s) 82, 129, 181, 305, 567, 610
BceAI ACGGC 1 cut(s) 318
BcgI CGANNNNNNTGC 2 cut(s) 445, 479
BciVI GTATCC 1 cut(s) 497
BclI TGATCA 1 cut(s) 370
BcoDI GTCTC 1 cut(s) 570
BfuI GTATCC 1 cut(s) 497
BisI GCNGC 6 cut(s) 96, 143, 195, 294, 556, 599
BlsI GCNGC 6 cut(s) 97, 144, 196, 295, 557, 600
Bme18I GGWCC 2 cut(s) 234, 287
BmgT120I GGNCC 3 cut(s) 234, 287, 545
BmiI GGNNCC 2 cut(s) 219, 263
BmrI ACTGGG 1 cut(s) 243
BmuI ACTGGG 1 cut(s) 243
BsaJI CCNNGG 1 cut(s) 134
BsaXI ACNNNNNCTCC 2 cut(s) 297, 327
Bsc4I CCNNNNNNNGG 1 cut(s) 500
Bse1I ACTGG 1 cut(s) 249
BseDI CCNNGG 1 cut(s) 134
BseGI GGATG 1 cut(s) 181
BseLI CCNNNNNNNGG 1 cut(s) 500
BseMII CTCAG 1 cut(s) 27
BseNI ACTGG 1 cut(s) 249
BseRI GAGGAG 2 cut(s) 455, 490
BseXI GCAGC 6 cut(s) 82, 129, 181, 305, 567, 610
BsgI GTGCAG 2 cut(s) 180, 617
BshFI GGCC 1 cut(s) 546
BsiSI CCGG 1 cut(s) 206
BslI CCNNNNNNNGG 1 cut(s) 500
BsmAI GTCTC 1 cut(s) 570
BsnI GGCC 1 cut(s) 546
Bsp143I GATC 2 cut(s) 261, 370
BspANI GGCC 1 cut(s) 546
BspCNI CTCAG 1 cut(s) 26
BspLI GGNNCC 2 cut(s) 219, 263
BspPI GGATC 2 cut(s) 256, 269
BsrI ACTGG 1 cut(s) 249
BssECI CCNNGG 1 cut(s) 134
BssMI GATC 2 cut(s) 261, 370
BssT1I CCWWGG 1 cut(s) 134
Bst4CI ACNGT 1 cut(s) 367
Bst6I CTCTTC 1 cut(s) 531
BstDEI CTNAG 2 cut(s) 13, 99
BstF5I GGATG 1 cut(s) 181
BstKTI GATC 2 cut(s) 264, 373
BstMAI GTCTC 1 cut(s) 570
BstMBI GATC 2 cut(s) 261, 370
BstMWI GCNNNNNNNGC 4 cut(s) 95, 148, 345, 552
BstV1I GCAGC 6 cut(s) 82, 129, 181, 305, 567, 610
BstX2I RGATCY 1 cut(s) 261
BstYI RGATCY 1 cut(s) 261
BsuI GTATCC 1 cut(s) 497
BsuRI GGCC 1 cut(s) 546
BtsCI GGATG 1 cut(s) 181
BtsIMutI CAGTG 2 cut(s) 256, 363
Cfr13I GGNCC 3 cut(s) 234, 287, 545
CseI GACGC 1 cut(s) 561
CviAII CATG 4 cut(s) 39, 110, 457, 569
DdeI CTNAG 2 cut(s) 13, 99
DpnI GATC 2 cut(s) 263, 372
DpnII GATC 2 cut(s) 261, 370
Eam1104I CTCTTC 1 cut(s) 531
EarI CTCTTC 1 cut(s) 531
Eco130I CCWWGG 1 cut(s) 134
Eco47I GGWCC 2 cut(s) 234, 287
Eco57I CTGAAG 2 cut(s) 243, 555
EcoT14I CCWWGG 1 cut(s) 134
ErhI CCWWGG 1 cut(s) 134
FaeI CATG 4 cut(s) 42, 113, 460, 572
FatI CATG 4 cut(s) 38, 109, 456, 568
FbaI TGATCA 1 cut(s) 370
Fnu4HI GCNGC 6 cut(s) 96, 143, 195, 294, 556, 599
FokI GGATG 1 cut(s) 168
Fsp4HI GCNGC 6 cut(s) 96, 143, 195, 294, 556, 599
GluI GCNGC 6 cut(s) 96, 143, 195, 294, 556, 599
HaeIII GGCC 1 cut(s) 546
HapII CCGG 1 cut(s) 206
HgaI GACGC 1 cut(s) 561
Hin1II CATG 4 cut(s) 42, 113, 460, 572
HindIII AAGCTT 3 cut(s) 22, 242, 517
HinfI GANTC 2 cut(s) 229, 462
HpaII CCGG 1 cut(s) 206
Hpy188I TCNGA 4 cut(s) 234, 423, 467, 585
Hpy188III TCNNGA 2 cut(s) 533, 604
Hpy99I CGWCG 2 cut(s) 339, 555
HpyAV CCTTC 3 cut(s) 208, 272, 504
HpyCH4III ACNGT 1 cut(s) 367
HpyCH4V TGCA 4 cut(s) 109, 151, 197, 598
HpyF10VI GCNNNNNNNGC 4 cut(s) 95, 148, 345, 552
HpyF3I CTNAG 2 cut(s) 13, 99
Hsp92II CATG 4 cut(s) 42, 113, 460, 572
Ksp22I TGATCA 1 cut(s) 370
Kzo9I GATC 2 cut(s) 261, 370
LpnPI CCDG 8 cut(s) 198, 219, 234, 262, 303, 408, 434, 546
Lsp1109I GCAGC 6 cut(s) 82, 129, 181, 305, 567, 610
MalI GATC 2 cut(s) 263, 372
MboI GATC 2 cut(s) 261, 370
MboII GAAGA 2 cut(s) 20, 548
MflI RGATCY 1 cut(s) 261
MluCI AATT 4 cut(s) 103, 318, 374, 528
MroXI GAANNNNTTC 2 cut(s) 117, 228
MseI TTAA 2 cut(s) 239, 321
MslI CAYNNNNRTG 2 cut(s) 395, 573
MspI CCGG 1 cut(s) 206
MwoI GCNNNNNNNGC 4 cut(s) 95, 148, 345, 552
NdeII GATC 2 cut(s) 261, 370
NlaIII CATG 4 cut(s) 42, 113, 460, 572
NlaIV GGNNCC 2 cut(s) 219, 263
OliI CACNNNNGTG 1 cut(s) 395
PdmI GAANNNNTTC 2 cut(s) 117, 228
PfeI GAWTC 2 cut(s) 229, 462
PkrI GCNGC 6 cut(s) 97, 144, 196, 295, 557, 600
PsiI TTATAA 1 cut(s) 428
PspN4I GGNNCC 2 cut(s) 219, 263
PspPI GGNCC 3 cut(s) 234, 287, 545
PsuI RGATCY 1 cut(s) 261
RseI CAYNNNNRTG 2 cut(s) 395, 573
SaqAI TTAA 2 cut(s) 239, 321
SatI GCNGC 6 cut(s) 96, 143, 195, 294, 556, 599
Sau3AI GATC 2 cut(s) 261, 370
Sau96I GGNCC 3 cut(s) 234, 287, 545
SinI GGWCC 2 cut(s) 234, 287
SmiMI CAYNNNNRTG 2 cut(s) 395, 573
Sse9I AATT 4 cut(s) 103, 318, 374, 528
StyI CCWWGG 1 cut(s) 134
TaaI ACNGT 1 cut(s) 367
TaqI TCGA 2 cut(s) 550, 591
TasI AATT 4 cut(s) 103, 318, 374, 528
TfiI GAWTC 2 cut(s) 229, 462
Tru1I TTAA 2 cut(s) 239, 321
Tru9I TTAA 2 cut(s) 239, 321
TscAI CASTG 2 cut(s) 256, 370
TseI GCWGC 6 cut(s) 95, 142, 194, 293, 555, 598
TspDTI ATGAA 4 cut(s) 126, 227, 347, 528
TspRI CASTG 2 cut(s) 256, 370
VpaK11BI GGWCC 2 cut(s) 234, 287
XapI RAATTY 1 cut(s) 103
XcmI CCANNNNNNNNNTGG 2 cut(s) 88, 307
XmnI GAANNNNTTC 2 cut(s) 117, 228
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.