Basic Information

Type: gene

Biological Identity

Species

rosa_chinensis

Chromosome

Orthogroup ID

OG0006742

Physical Location & Seq

Genomic Coordinates Reverse (-)

81325050 .. 81327069

Gene Structure 2020 bp

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UTR

Exon/CDS

Intron

Transcript / Protein ID

PRQ35023

Sequence Viewer

CDS Protein Promoter (2k)

Length: 306 bp

ATGCAGGCGCACAAATGGCTATTTTGTTCATACACTGTTGATCAATTCAGTGGAGAAAGCACACCCGTGATACTTCCTGTGGACGAAAATCAGATTATAAAAGGCTTGGAGGAGGTTCTGGTTGGCATGAGAATCGGAGGAAAGAGGAGAGCATTGATAACTCCTTCTGTGGGATACACAAATGAAAGCTTACAACCAATTCCTGAAGAGTTTGGCACTCGACGCAGCCTCTTATCTCATGTAAATGAGCCTTTGATATTCGAGCTTCAAGAGCTGCAATATATAATTCCATGCCTAGTGGATTAG

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0005575 GO:0005622 GO:0005623 GO:0005737 GO:0009507 GO:0009536 GO:0043226 GO:0043227 GO:0043229 GO:0043231 GO:0044424 GO:0044444 GO:0044464

KEGG Pathways

Metabolic & Signaling

No pathways identified.

Pfam Domains

Protein Families

FKBP_C

Protein Analysis

101

Amino Acids

11.44

Weight (kDa)

4.92

Isoelectric Point (pI)

52.29

Instability Index

Protein Domains (Pfam)

Domain Name	Pfam ID	Position	E-value	Description
FKBP_C	PF00254	17 - 89	2.6e-11	FKBP-type peptidyl-prolyl cis-trans isomerase

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

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Align Labels (Cladogram)

Image

Tree File

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Orthologous Genes (Group: OG0006742)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT4G26555 AT4G26555 AT4G26555
fragaria_vesca	FvH4_3g42230 FvH4_3g42230 FvH4_3g42230 FvH4_3g42230
malus_domestica	MD03G1036700.v1.1
prunus_persica	Prupe.6G028700_v2.0.a1 Prupe.6G028700_v2.0.a1
pyrus_communis	pycom03g02810 pycom11g03110
rosa_chinensis	RchiOBHm_Chr5g0075491 RchiOBHm_Chr5g0075521 RchiOBHm_Chr5g0075531
rosa_laevigata	RLG00000036573
rosa_multiflora	Rmu_co8432907.1_g000001
rosa_roxburghii	Rroxscaffold_1G00006020
rosa_rugosa	Rorug05G0440000 Rorug05G0440000
rosa_samantha	Rh5AG497100 Rh5AG497400 Rh5BG518300 Rh5CG541900 Rh5DG530800
rosa_wichuraiana	Rw5G046110

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AanI	TTATAA	1 cut(s)	98
AcuI	CTGAAG	1 cut(s)	225
AfiI	CCNNNNNNNGG	1 cut(s)	170
AgsI	TTSAA	1 cut(s)	269
AleI	CACNNNNGTG	1 cut(s)	65
AluBI	AGCT	3 cut(s)	189, 265, 274
AluI	AGCT	3 cut(s)	189, 265, 274
ApeKI	GCWGC	2 cut(s)	225, 274
AspLEI	GCGC	1 cut(s)	10
BbvI	GCAGC	2 cut(s)	237, 261
BcgI	CGANNNNNNTGC	2 cut(s)	115, 149
BciVI	GTATCC	1 cut(s)	167
BclI	TGATCA	1 cut(s)	40
BfaI	CTAG	1 cut(s)	296
BfuI	GTATCC	1 cut(s)	167
BisI	GCNGC	2 cut(s)	226, 275
BlsI	GCNGC	2 cut(s)	227, 276
Bsc4I	CCNNNNNNNGG	1 cut(s)	170
BseLI	CCNNNNNNNGG	1 cut(s)	170
BseRI	GAGGAG	2 cut(s)	125, 160
BseXI	GCAGC	2 cut(s)	237, 261
BslI	CCNNNNNNNGG	1 cut(s)	170
Bsp143I	GATC	1 cut(s)	40
BssMI	GATC	1 cut(s)	40
Bst4CI	ACNGT	1 cut(s)	37
Bst6I	CTCTTC	1 cut(s)	201
BstC8I	GCNNGC	1 cut(s)	6
BstHHI	GCGC	1 cut(s)	10
BstKTI	GATC	1 cut(s)	43
BstMBI	GATC	1 cut(s)	40
BstMWI	GCNNNNNNNGC	3 cut(s)	16, 222, 271
BstV1I	GCAGC	2 cut(s)	237, 261
BsuI	GTATCC	1 cut(s)	167
BtsIMutI	CAGTG	2 cut(s)	33, 55
Cac8I	GCNNGC	1 cut(s)	6
CfoI	GCGC	1 cut(s)	10
CseI	GACGC	1 cut(s)	231
CviAII	CATG	3 cut(s)	127, 239, 291
CviJI	RGCY	7 cut(s)	19, 105, 189, 228, 250, 265, 274
CviKI_1	RGCY	7 cut(s)	19, 105, 189, 228, 250, 265, 274
DpnI	GATC	1 cut(s)	42
DpnII	GATC	1 cut(s)	40
Eam1104I	CTCTTC	1 cut(s)	201
EarI	CTCTTC	1 cut(s)	201
Eco57I	CTGAAG	1 cut(s)	225
FaeI	CATG	3 cut(s)	130, 242, 294
FaiI	YATR	7 cut(s)	31, 98, 128, 240, 282, 284, 292
FatI	CATG	3 cut(s)	126, 238, 290
FbaI	TGATCA	1 cut(s)	40
Fnu4HI	GCNGC	2 cut(s)	226, 275
Fsp4HI	GCNGC	2 cut(s)	226, 275
FspBI	CTAG	1 cut(s)	296
GlaI	GCGC	1 cut(s)	9
GluI	GCNGC	2 cut(s)	226, 275
HgaI	GACGC	1 cut(s)	231
HhaI	GCGC	1 cut(s)	10
Hin1II	CATG	3 cut(s)	130, 242, 294
Hin6I	GCGC	1 cut(s)	8
HinP1I	GCGC	1 cut(s)	8
HindIII	AAGCTT	1 cut(s)	187
HinfI	GANTC	1 cut(s)	132
Hpy166II	GTNNAC	1 cut(s)	82
Hpy188I	TCNGA	2 cut(s)	93, 137
Hpy188III	TCNNGA	2 cut(s)	203, 269
Hpy8I	GTNNAC	1 cut(s)	82
Hpy99I	CGWCG	1 cut(s)	225
HpyAV	CCTTC	1 cut(s)	174
HpyCH4III	ACNGT	1 cut(s)	37
HpyCH4V	TGCA	2 cut(s)	4, 277
HpyF10VI	GCNNNNNNNGC	3 cut(s)	16, 222, 271
Hsp92II	CATG	3 cut(s)	130, 242, 294
HspAI	GCGC	1 cut(s)	8
Ksp22I	TGATCA	1 cut(s)	40
Kzo9I	GATC	1 cut(s)	40
LpnPI	CCDG	3 cut(s)	90, 104, 216
Lsp1109I	GCAGC	2 cut(s)	237, 261
MaeI	CTAG	1 cut(s)	296
MalI	GATC	1 cut(s)	42
MboI	GATC	1 cut(s)	40
MboII	GAAGA	1 cut(s)	218
MluCI	AATT	3 cut(s)	44, 198, 285
MnlI	CCTC	5 cut(s)	103, 106, 131, 138, 239
MslI	CAYNNNNRTG	2 cut(s)	65, 243
MwoI	GCNNNNNNNGC	3 cut(s)	16, 222, 271
NdeII	GATC	1 cut(s)	40
NlaIII	CATG	3 cut(s)	130, 242, 294
OliI	CACNNNNGTG	1 cut(s)	65
PfeI	GAWTC	1 cut(s)	132
PkrI	GCNGC	2 cut(s)	227, 276
PsiI	TTATAA	1 cut(s)	98
RseI	CAYNNNNRTG	2 cut(s)	65, 243
SatI	GCNGC	2 cut(s)	226, 275
Sau3AI	GATC	1 cut(s)	40
SetI	ASST	4 cut(s)	117, 191, 267, 276
SmiMI	CAYNNNNRTG	2 cut(s)	65, 243
Sse9I	AATT	3 cut(s)	44, 198, 285
SspMI	CTAG	1 cut(s)	296
TaaI	ACNGT	1 cut(s)	37
TaqI	TCGA	2 cut(s)	220, 261
TasI	AATT	3 cut(s)	44, 198, 285
TfiI	GAWTC	1 cut(s)	132
TscAI	CASTG	2 cut(s)	40, 55
TseI	GCWGC	2 cut(s)	225, 274
TspDTI	ATGAA	2 cut(s)	18, 198
TspRI	CASTG	2 cut(s)	40, 55
XspI	CTAG	1 cut(s)	296

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.