Rroxscaffold_1G00006020

Peptidyl-prolyl cis-trans isomerase

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
rosa_roxburghii
GWHEROQ00000001
OG0006742
Physical Location & Seq
Forward (+)
8053647 .. 8056354
2708 bp
Loading structure...
UTR
Exon/CDS
Intron
Rroxscaffold_1G00006020.1

Sequence Viewer

Length: 621 bp
ATGGAAACTCTCTCATTTCCAAGCTTGCTTCAACTCCCATGTTCTCCCAAAAATCCAAGATATGTAGATAAAGAGCCACCCAAGAACGCTGTGGCTGCTAAGAATTTGCATGAAAGATTACCTCCCAAAAGATTACCAAGGAGGCTGCTTTTGCAGTTTATGGGGTTCTTCCCAATCGTATCACATCCTGTTTTGGCTGCACCAATGCCGGAGATGAAGGAACCTGAAGTGATTCGGACCTTAAAGCTTCCCAGTGGTGTGAGGATCCAAGAGATTGTTGAAGGGCAAGGACCAGCAGCCACCAAAGGAGATTTGGTTGAAATTAACTATGTATGCCGTCGCACAAATGGCTATTTTGTTCATAGCACTGTTGATCAATTCAATGGAGAAAGCACACCTGTGATACTTCCTTTGGATGAAAATCAGATTATAAAAGGCTTGGAGGAGGTTCTGGTTGGCATGAGAATCGGAGGAAAGAGGAGAGCATTGATACCTCCTTCTGTGGGATACACAAATGAAAGCTTACAACCAATTCCTGAAGAGTTTGGCCCTCGACGCAGCCTCTTGTCTCATGTAAATGAGCCTCTGATATTCGAGGTGCAGCTTTTGAAACTACTATGA
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
GO:0005575 GO:0005622 GO:0005623 GO:0005737 GO:0009507 GO:0009536 GO:0043226 GO:0043227 GO:0043229 GO:0043231 GO:0044424 GO:0044444 GO:0044464
KEGG Pathways
Metabolic & Signaling
No pathways identified.
Pfam Domains
Protein Families
FKBP_C

Protein Analysis

206

Amino Acids

23.1

Weight (kDa)

8.9

Isoelectric Point (pI)

51.37

Instability Index
Protein Domains (Pfam)
Domain Name Pfam ID Position E-value Description
FKBP_C PF00254 99 - 203 8.9e-18 FKBP-type peptidyl-prolyl cis-trans isomerase
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
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Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AanI TTATAA 1 cut(s) 431
AclWI GGATC 2 cut(s) 259, 272
AcsI RAATTY 1 cut(s) 103
AcuI CTGAAG 2 cut(s) 246, 558
AfiI CCNNNNNNNGG 1 cut(s) 503
AgsI TTSAA 5 cut(s) 32, 281, 320, 382, 610
AleI CACNNNNGTG 1 cut(s) 398
AluBI AGCT 4 cut(s) 24, 247, 522, 604
AluI AGCT 4 cut(s) 24, 247, 522, 604
Alw26I GTCTC 1 cut(s) 573
AlwI GGATC 2 cut(s) 259, 272
AoxI GGCC 1 cut(s) 547
ApeKI GCWGC 6 cut(s) 95, 145, 197, 296, 558, 601
ApoI RAATTY 1 cut(s) 103
Asp700I GAANNNNTTC 1 cut(s) 231
AspS9I GGNCC 3 cut(s) 237, 290, 548
AvaII GGWCC 2 cut(s) 237, 290
BamHI GGATCC 1 cut(s) 264
BbvI GCAGC 6 cut(s) 82, 132, 184, 308, 570, 613
BceAI ACGGC 1 cut(s) 321
BcgI CGANNNNNNTGC 2 cut(s) 448, 482
BciVI GTATCC 1 cut(s) 500
BclI TGATCA 1 cut(s) 373
BcoDI GTCTC 1 cut(s) 573
BfuI GTATCC 1 cut(s) 500
BisI GCNGC 6 cut(s) 96, 146, 198, 297, 559, 602
BlsI GCNGC 6 cut(s) 97, 147, 199, 298, 560, 603
Bme18I GGWCC 2 cut(s) 237, 290
BmgT120I GGNCC 3 cut(s) 237, 290, 548
BmiI GGNNCC 2 cut(s) 222, 266
BmrI ACTGGG 1 cut(s) 246
BmuI ACTGGG 1 cut(s) 246
BsaBI GATNNNNATC 1 cut(s) 420
BsaJI CCNNGG 1 cut(s) 137
BsaXI ACNNNNNCTCC 2 cut(s) 300, 330
Bsc4I CCNNNNNNNGG 1 cut(s) 503
Bse1I ACTGG 1 cut(s) 252
Bse8I GATNNNNATC 1 cut(s) 420
BseDI CCNNGG 1 cut(s) 137
BseGI GGATG 2 cut(s) 184, 421
BseJI GATNNNNATC 1 cut(s) 420
BseLI CCNNNNNNNGG 1 cut(s) 503
BseNI ACTGG 1 cut(s) 252
BseRI GAGGAG 2 cut(s) 458, 493
BseXI GCAGC 6 cut(s) 82, 132, 184, 308, 570, 613
BsgI GTGCAG 2 cut(s) 183, 620
BshFI GGCC 1 cut(s) 549
BsiSI CCGG 1 cut(s) 209
BslI CCNNNNNNNGG 1 cut(s) 503
BsmAI GTCTC 1 cut(s) 573
BsnI GGCC 1 cut(s) 549
Bsp143I GATC 2 cut(s) 264, 373
BspANI GGCC 1 cut(s) 549
BspLI GGNNCC 2 cut(s) 222, 266
BspPI GGATC 2 cut(s) 259, 272
BsrI ACTGG 1 cut(s) 252
BssECI CCNNGG 1 cut(s) 137
BssMI GATC 2 cut(s) 264, 373
BssT1I CCWWGG 1 cut(s) 137
Bst4CI ACNGT 1 cut(s) 370
Bst6I CTCTTC 1 cut(s) 534
BstC8I GCNNGC 1 cut(s) 26
BstDEI CTNAG 1 cut(s) 99
BstF5I GGATG 2 cut(s) 184, 421
BstKTI GATC 2 cut(s) 267, 376
BstMAI GTCTC 1 cut(s) 573
BstMBI GATC 2 cut(s) 264, 373
BstMWI GCNNNNNNNGC 4 cut(s) 95, 151, 348, 555
BstV1I GCAGC 6 cut(s) 82, 132, 184, 308, 570, 613
BstX2I RGATCY 1 cut(s) 264
BstYI RGATCY 1 cut(s) 264
BsuI GTATCC 1 cut(s) 500
BsuRI GGCC 1 cut(s) 549
BtsCI GGATG 2 cut(s) 184, 421
BtsIMutI CAGTG 2 cut(s) 259, 366
Cac8I GCNNGC 1 cut(s) 26
Cfr13I GGNCC 3 cut(s) 237, 290, 548
CseI GACGC 1 cut(s) 564
CviAII CATG 4 cut(s) 39, 110, 460, 572
DdeI CTNAG 1 cut(s) 99
DpnI GATC 2 cut(s) 266, 375
DpnII GATC 2 cut(s) 264, 373
Eam1104I CTCTTC 1 cut(s) 534
EarI CTCTTC 1 cut(s) 534
Eco130I CCWWGG 1 cut(s) 137
Eco47I GGWCC 2 cut(s) 237, 290
Eco57I CTGAAG 2 cut(s) 246, 558
EcoT14I CCWWGG 1 cut(s) 137
ErhI CCWWGG 1 cut(s) 137
FaeI CATG 4 cut(s) 42, 113, 463, 575
FatI CATG 4 cut(s) 38, 109, 459, 571
FbaI TGATCA 1 cut(s) 373
Fnu4HI GCNGC 6 cut(s) 96, 146, 198, 297, 559, 602
FokI GGATG 2 cut(s) 171, 428
Fsp4HI GCNGC 6 cut(s) 96, 146, 198, 297, 559, 602
GluI GCNGC 6 cut(s) 96, 146, 198, 297, 559, 602
HaeIII GGCC 1 cut(s) 549
HapII CCGG 1 cut(s) 209
HgaI GACGC 1 cut(s) 564
Hin1II CATG 4 cut(s) 42, 113, 463, 575
HindIII AAGCTT 3 cut(s) 22, 245, 520
HinfI GANTC 2 cut(s) 232, 465
HpaII CCGG 1 cut(s) 209
Hpy188I TCNGA 4 cut(s) 237, 426, 470, 588
Hpy188III TCNNGA 1 cut(s) 536
Hpy99I CGWCG 2 cut(s) 342, 558
HpyAV CCTTC 3 cut(s) 211, 275, 507
HpyCH4III ACNGT 1 cut(s) 370
HpyCH4V TGCA 4 cut(s) 109, 154, 200, 601
HpyF10VI GCNNNNNNNGC 4 cut(s) 95, 151, 348, 555
HpyF3I CTNAG 1 cut(s) 99
Hsp92II CATG 4 cut(s) 42, 113, 463, 575
Ksp22I TGATCA 1 cut(s) 373
Kzo9I GATC 2 cut(s) 264, 373
LpnPI CCDG 8 cut(s) 201, 222, 237, 265, 306, 411, 437, 549
Lsp1109I GCAGC 6 cut(s) 82, 132, 184, 308, 570, 613
MalI GATC 2 cut(s) 266, 375
MboI GATC 2 cut(s) 264, 373
MboII GAAGA 2 cut(s) 160, 551
MflI RGATCY 1 cut(s) 264
MluCI AATT 4 cut(s) 103, 321, 377, 531
MroXI GAANNNNTTC 1 cut(s) 231
MseI TTAA 2 cut(s) 242, 324
MslI CAYNNNNRTG 2 cut(s) 398, 576
MspI CCGG 1 cut(s) 209
MwoI GCNNNNNNNGC 4 cut(s) 95, 151, 348, 555
NdeII GATC 2 cut(s) 264, 373
NlaIII CATG 4 cut(s) 42, 113, 463, 575
NlaIV GGNNCC 2 cut(s) 222, 266
OliI CACNNNNGTG 1 cut(s) 398
PdmI GAANNNNTTC 1 cut(s) 231
PfeI GAWTC 2 cut(s) 232, 465
PkrI GCNGC 6 cut(s) 97, 147, 199, 298, 560, 603
PsiI TTATAA 1 cut(s) 431
PspN4I GGNNCC 2 cut(s) 222, 266
PspPI GGNCC 3 cut(s) 237, 290, 548
PsuI RGATCY 1 cut(s) 264
RseI CAYNNNNRTG 2 cut(s) 398, 576
SaqAI TTAA 2 cut(s) 242, 324
SatI GCNGC 6 cut(s) 96, 146, 198, 297, 559, 602
Sau3AI GATC 2 cut(s) 264, 373
Sau96I GGNCC 3 cut(s) 237, 290, 548
SinI GGWCC 2 cut(s) 237, 290
SmiMI CAYNNNNRTG 2 cut(s) 398, 576
Sse9I AATT 4 cut(s) 103, 321, 377, 531
StyI CCWWGG 1 cut(s) 137
TaaI ACNGT 1 cut(s) 370
TaqI TCGA 2 cut(s) 553, 594
TasI AATT 4 cut(s) 103, 321, 377, 531
TfiI GAWTC 2 cut(s) 232, 465
Tru1I TTAA 2 cut(s) 242, 324
Tru9I TTAA 2 cut(s) 242, 324
TscAI CASTG 2 cut(s) 259, 373
TseI GCWGC 6 cut(s) 95, 145, 197, 296, 558, 601
TspDTI ATGAA 5 cut(s) 126, 230, 350, 432, 531
TspRI CASTG 2 cut(s) 259, 373
VpaK11BI GGWCC 2 cut(s) 237, 290
XapI RAATTY 1 cut(s) 103
XcmI CCANNNNNNNNNTGG 2 cut(s) 88, 310
XmnI GAANNNNTTC 1 cut(s) 231
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.