Rw5G046110

Peptidyl-prolyl cis-trans isomerase

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
rosa_wichuraiana
Chr5
OG0006742
Physical Location & Seq
Reverse (-)
80211913 .. 80214480
2568 bp
Loading structure...
UTR
Exon/CDS
Intron
Rw5G046110.1

Sequence Viewer

Length: 618 bp
ATGGAAACTCTCTCATTTCCAAGCTTGCTTCAACTTCCATGTTCTCCCAAAAATCCAAGGTATGTAGATAAAGAGCCACCGAACAACGCTGTGGCTGCTAAGAATTTGCATGAAAGATTTCCCAAAAGGTTACCAAGGAGGCTGCTTTTGCAGTTTACGGGGTTCTGCCCAATCCTATCACATCCTGTTTTGGCTGCACCAATGCCGGAGATGAAGGAACCTGAAGTGATTCGGACCTTAAAGCTTCCCAGTGGTGTGAGGATCCAAGAGATTGTTGAAGGGCAAGGACCAGCAGCCACCAAAGGAGATTTGGTTGAAATTAACTATGTATGCCGTCGCACAAATGGCTATTTTGTTCATAGCACTGTTGATCAATTCAATGGAGAAAGCACACCTGTGATACTTCCTTTGGACGAAAATCAGATTATAAAAGGCTTGGAGGAGGTTCTGGTTGGCATGAGAATCGGAGGAAAGAGGAGAGCATTGATACCTCCTTCTGTGGGATACACAAATGAAAGCTTACAACCAATTCCTGAAGAGTTTGGCCCTCGACGCAGCCTCTTGTCTCATGTACATGAGCCTCTGATATTCGAGGTGCAGCTCTTGAAACTACTATGA
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
GO:0005575 GO:0005622 GO:0005623 GO:0005737 GO:0009507 GO:0009536 GO:0043226 GO:0043227 GO:0043229 GO:0043231 GO:0044424 GO:0044444 GO:0044464
KEGG Pathways
Metabolic & Signaling
No pathways identified.
Pfam Domains
Protein Families
FKBP_C

Protein Analysis

205

Amino Acids

22.98

Weight (kDa)

8.45

Isoelectric Point (pI)

51.57

Instability Index
Protein Domains (Pfam)
Domain Name Pfam ID Position E-value Description
FKBP_C PF00254 98 - 202 9.2e-18 FKBP-type peptidyl-prolyl cis-trans isomerase
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
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Publication-ready
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Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AanI TTATAA 1 cut(s) 428
AclWI GGATC 2 cut(s) 256, 269
AcsI RAATTY 1 cut(s) 103
AcuI CTGAAG 2 cut(s) 243, 555
AfaI GTAC 1 cut(s) 573
AfiI CCNNNNNNNGG 1 cut(s) 500
AgsI TTSAA 5 cut(s) 32, 278, 317, 379, 607
AleI CACNNNNGTG 1 cut(s) 395
AluBI AGCT 4 cut(s) 24, 244, 519, 601
AluI AGCT 4 cut(s) 24, 244, 519, 601
Alw26I GTCTC 1 cut(s) 570
AlwI GGATC 2 cut(s) 256, 269
AoxI GGCC 1 cut(s) 544
ApeKI GCWGC 6 cut(s) 95, 142, 194, 293, 555, 598
ApoI RAATTY 1 cut(s) 103
Asp700I GAANNNNTTC 2 cut(s) 117, 228
AspS9I GGNCC 3 cut(s) 234, 287, 545
AvaII GGWCC 2 cut(s) 234, 287
BamHI GGATCC 1 cut(s) 261
BbvI GCAGC 6 cut(s) 82, 129, 181, 305, 567, 610
BceAI ACGGC 1 cut(s) 318
BcgI CGANNNNNNTGC 2 cut(s) 445, 479
BciVI GTATCC 1 cut(s) 497
BclI TGATCA 1 cut(s) 370
BcoDI GTCTC 1 cut(s) 570
BfuI GTATCC 1 cut(s) 497
BisI GCNGC 6 cut(s) 96, 143, 195, 294, 556, 599
BlsI GCNGC 6 cut(s) 97, 144, 196, 295, 557, 600
Bme18I GGWCC 2 cut(s) 234, 287
BmgT120I GGNCC 3 cut(s) 234, 287, 545
BmiI GGNNCC 2 cut(s) 219, 263
BmrI ACTGGG 1 cut(s) 243
BmuI ACTGGG 1 cut(s) 243
BsaJI CCNNGG 2 cut(s) 56, 134
BsaXI ACNNNNNCTCC 2 cut(s) 297, 327
Bsc4I CCNNNNNNNGG 1 cut(s) 500
Bse1I ACTGG 1 cut(s) 249
BseDI CCNNGG 2 cut(s) 56, 134
BseGI GGATG 1 cut(s) 181
BseLI CCNNNNNNNGG 1 cut(s) 500
BseNI ACTGG 1 cut(s) 249
BseRI GAGGAG 2 cut(s) 455, 490
BseXI GCAGC 6 cut(s) 82, 129, 181, 305, 567, 610
BsgI GTGCAG 2 cut(s) 180, 617
BshFI GGCC 1 cut(s) 546
BsiSI CCGG 1 cut(s) 206
BslI CCNNNNNNNGG 1 cut(s) 500
BsmAI GTCTC 1 cut(s) 570
BsnI GGCC 1 cut(s) 546
Bsp1407I TGTACA 1 cut(s) 571
Bsp143I GATC 2 cut(s) 261, 370
BspANI GGCC 1 cut(s) 546
BspLI GGNNCC 2 cut(s) 219, 263
BspPI GGATC 2 cut(s) 256, 269
BsrGI TGTACA 1 cut(s) 571
BsrI ACTGG 1 cut(s) 249
BssECI CCNNGG 2 cut(s) 56, 134
BssMI GATC 2 cut(s) 261, 370
BssT1I CCWWGG 2 cut(s) 56, 134
Bst4CI ACNGT 1 cut(s) 367
Bst6I CTCTTC 1 cut(s) 531
BstAUI TGTACA 1 cut(s) 571
BstC8I GCNNGC 1 cut(s) 26
BstDEI CTNAG 1 cut(s) 99
BstEII GGTNACC 1 cut(s) 129
BstF5I GGATG 1 cut(s) 181
BstKTI GATC 2 cut(s) 264, 373
BstMAI GTCTC 1 cut(s) 570
BstMBI GATC 2 cut(s) 261, 370
BstMWI GCNNNNNNNGC 4 cut(s) 95, 148, 345, 552
BstPI GGTNACC 1 cut(s) 129
BstV1I GCAGC 6 cut(s) 82, 129, 181, 305, 567, 610
BstX2I RGATCY 1 cut(s) 261
BstYI RGATCY 1 cut(s) 261
BsuI GTATCC 1 cut(s) 497
BsuRI GGCC 1 cut(s) 546
BtsCI GGATG 1 cut(s) 181
BtsIMutI CAGTG 2 cut(s) 256, 363
Cac8I GCNNGC 1 cut(s) 26
Cfr13I GGNCC 3 cut(s) 234, 287, 545
CseI GACGC 1 cut(s) 561
Csp6I GTAC 1 cut(s) 572
CviAII CATG 5 cut(s) 39, 110, 457, 569, 575
CviQI GTAC 1 cut(s) 572
DdeI CTNAG 1 cut(s) 99
DpnI GATC 2 cut(s) 263, 372
DpnII GATC 2 cut(s) 261, 370
Eam1104I CTCTTC 1 cut(s) 531
EarI CTCTTC 1 cut(s) 531
Eco130I CCWWGG 2 cut(s) 56, 134
Eco47I GGWCC 2 cut(s) 234, 287
Eco57I CTGAAG 2 cut(s) 243, 555
Eco91I GGTNACC 1 cut(s) 129
EcoO65I GGTNACC 1 cut(s) 129
EcoT14I CCWWGG 2 cut(s) 56, 134
ErhI CCWWGG 2 cut(s) 56, 134
FaeI CATG 5 cut(s) 42, 113, 460, 572, 578
FatI CATG 5 cut(s) 38, 109, 456, 568, 574
FbaI TGATCA 1 cut(s) 370
Fnu4HI GCNGC 6 cut(s) 96, 143, 195, 294, 556, 599
FokI GGATG 1 cut(s) 168
Fsp4HI GCNGC 6 cut(s) 96, 143, 195, 294, 556, 599
GluI GCNGC 6 cut(s) 96, 143, 195, 294, 556, 599
HaeIII GGCC 1 cut(s) 546
HapII CCGG 1 cut(s) 206
HgaI GACGC 1 cut(s) 561
Hin1II CATG 5 cut(s) 42, 113, 460, 572, 578
HindIII AAGCTT 3 cut(s) 22, 242, 517
HinfI GANTC 2 cut(s) 229, 462
HpaII CCGG 1 cut(s) 206
Hpy166II GTNNAC 1 cut(s) 156
Hpy188I TCNGA 4 cut(s) 234, 423, 467, 585
Hpy188III TCNNGA 2 cut(s) 533, 604
Hpy8I GTNNAC 1 cut(s) 156
Hpy99I CGWCG 2 cut(s) 339, 555
HpyAV CCTTC 3 cut(s) 208, 272, 504
HpyCH4III ACNGT 1 cut(s) 367
HpyCH4V TGCA 4 cut(s) 109, 151, 197, 598
HpyF10VI GCNNNNNNNGC 4 cut(s) 95, 148, 345, 552
HpyF3I CTNAG 1 cut(s) 99
Hsp92II CATG 5 cut(s) 42, 113, 460, 572, 578
Ksp22I TGATCA 1 cut(s) 370
Kzo9I GATC 2 cut(s) 261, 370
LpnPI CCDG 8 cut(s) 198, 219, 234, 262, 303, 408, 434, 546
Lsp1109I GCAGC 6 cut(s) 82, 129, 181, 305, 567, 610
MaeIII GTNAC 1 cut(s) 129
MalI GATC 2 cut(s) 263, 372
MboI GATC 2 cut(s) 261, 370
MboII GAAGA 1 cut(s) 548
MflI RGATCY 1 cut(s) 261
MluCI AATT 4 cut(s) 103, 318, 374, 528
MroXI GAANNNNTTC 2 cut(s) 117, 228
MseI TTAA 2 cut(s) 239, 321
MslI CAYNNNNRTG 2 cut(s) 395, 573
MspI CCGG 1 cut(s) 206
MwoI GCNNNNNNNGC 4 cut(s) 95, 148, 345, 552
NdeII GATC 2 cut(s) 261, 370
NlaIII CATG 5 cut(s) 42, 113, 460, 572, 578
NlaIV GGNNCC 2 cut(s) 219, 263
OliI CACNNNNGTG 1 cut(s) 395
PdmI GAANNNNTTC 2 cut(s) 117, 228
PfeI GAWTC 2 cut(s) 229, 462
PkrI GCNGC 6 cut(s) 97, 144, 196, 295, 557, 600
PsiI TTATAA 1 cut(s) 428
PspEI GGTNACC 1 cut(s) 129
PspN4I GGNNCC 2 cut(s) 219, 263
PspPI GGNCC 3 cut(s) 234, 287, 545
PsuI RGATCY 1 cut(s) 261
RsaI GTAC 1 cut(s) 573
RsaNI GTAC 1 cut(s) 572
RseI CAYNNNNRTG 2 cut(s) 395, 573
SaqAI TTAA 2 cut(s) 239, 321
SatI GCNGC 6 cut(s) 96, 143, 195, 294, 556, 599
Sau3AI GATC 2 cut(s) 261, 370
Sau96I GGNCC 3 cut(s) 234, 287, 545
SinI GGWCC 2 cut(s) 234, 287
SmiMI CAYNNNNRTG 2 cut(s) 395, 573
Sse9I AATT 4 cut(s) 103, 318, 374, 528
StyI CCWWGG 2 cut(s) 56, 134
TaaI ACNGT 1 cut(s) 367
TaqI TCGA 2 cut(s) 550, 591
TasI AATT 4 cut(s) 103, 318, 374, 528
TatI WGTACW 1 cut(s) 571
TfiI GAWTC 2 cut(s) 229, 462
Tru1I TTAA 2 cut(s) 239, 321
Tru9I TTAA 2 cut(s) 239, 321
TscAI CASTG 2 cut(s) 256, 370
TseI GCWGC 6 cut(s) 95, 142, 194, 293, 555, 598
TspDTI ATGAA 4 cut(s) 126, 227, 347, 528
TspRI CASTG 2 cut(s) 256, 370
VpaK11BI GGWCC 2 cut(s) 234, 287
XapI RAATTY 1 cut(s) 103
XcmI CCANNNNNNNNNTGG 1 cut(s) 307
XmnI GAANNNNTTC 2 cut(s) 117, 228
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.