RchiOBHm_Chr5g0075491

Peptidyl-prolyl cis-trans isomerase

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
rosa_chinensis
5
OG0006742
Physical Location & Seq
Reverse (-)
81308051 .. 81310924
2874 bp
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UTR
Exon/CDS
Intron
PRQ35020

Sequence Viewer

Length: 363 bp
ATGAGTGACATTCTTTTCCTAGAGATTGTTGAAGGGCAAGGACCAGCAGCCACCAAAGGAGATTTGGTTGAAATTAACTATGTATGCCGTCGCACAAATGGCTATTTTCCTGTTGATCAATTCAATGGAGAAAGCACACCTGTGATACTTCCTTTGGACGAAAATCAGATTATAAAAGGCTTGGAGGAGGTTCTGGTTGGCATGAGAATTGGAGGAAAAAGGAGAGCATTGATACCTCCTTCTGTGGGATACACAAATGAAAGCTTACAACCAATTCCTGAAGAGTTTGGCCCTCGACGCAGCCTCTTGTCTCATGTAAATGAGCCTTTGATATTCGAGGTGCAGCTTTTGAAACTACTATGA
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
GO:0005575 GO:0005622 GO:0005623 GO:0005737 GO:0009507 GO:0009536 GO:0043226 GO:0043227 GO:0043229 GO:0043231 GO:0044424 GO:0044444 GO:0044464
KEGG Pathways
Metabolic & Signaling
No pathways identified.
Pfam Domains
Protein Families
FKBP_C

Protein Analysis

120

Amino Acids

13.36

Weight (kDa)

4.84

Isoelectric Point (pI)

50.6

Instability Index
Protein Domains (Pfam)
Domain Name Pfam ID Position E-value Description
FKBP_C PF00254 16 - 117 1e-17 FKBP-type peptidyl-prolyl cis-trans isomerase
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

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Publication-ready
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Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AanI TTATAA 1 cut(s) 173
AcuI CTGAAG 1 cut(s) 300
AfiI CCNNNNNNNGG 1 cut(s) 245
AgsI TTSAA 4 cut(s) 32, 71, 124, 352
AleI CACNNNNGTG 1 cut(s) 140
AluBI AGCT 2 cut(s) 264, 346
AluI AGCT 2 cut(s) 264, 346
Alw26I GTCTC 1 cut(s) 315
AoxI GGCC 1 cut(s) 289
ApeKI GCWGC 3 cut(s) 47, 300, 343
AspS9I GGNCC 2 cut(s) 41, 290
AvaII GGWCC 1 cut(s) 41
BbvI GCAGC 3 cut(s) 59, 312, 355
BceAI ACGGC 1 cut(s) 72
BciVI GTATCC 1 cut(s) 242
BclI TGATCA 1 cut(s) 115
BcoDI GTCTC 1 cut(s) 315
BfaI CTAG 1 cut(s) 20
BfuI GTATCC 1 cut(s) 242
BisI GCNGC 3 cut(s) 48, 301, 344
BlsI GCNGC 3 cut(s) 49, 302, 345
Bme18I GGWCC 1 cut(s) 41
BmgT120I GGNCC 2 cut(s) 41, 290
BsaXI ACNNNNNCTCC 2 cut(s) 51, 81
Bsc4I CCNNNNNNNGG 1 cut(s) 245
BseLI CCNNNNNNNGG 1 cut(s) 245
BseRI GAGGAG 1 cut(s) 200
BseXI GCAGC 3 cut(s) 59, 312, 355
BsgI GTGCAG 1 cut(s) 362
BshFI GGCC 1 cut(s) 291
BslI CCNNNNNNNGG 1 cut(s) 245
BsmAI GTCTC 1 cut(s) 315
BsnI GGCC 1 cut(s) 291
Bsp143I GATC 1 cut(s) 115
BspANI GGCC 1 cut(s) 291
BssMI GATC 1 cut(s) 115
Bst6I CTCTTC 1 cut(s) 276
BstKTI GATC 1 cut(s) 118
BstMAI GTCTC 1 cut(s) 315
BstMBI GATC 1 cut(s) 115
BstMWI GCNNNNNNNGC 2 cut(s) 99, 297
BstV1I GCAGC 3 cut(s) 59, 312, 355
BsuI GTATCC 1 cut(s) 242
BsuRI GGCC 1 cut(s) 291
Cfr13I GGNCC 2 cut(s) 41, 290
CseI GACGC 1 cut(s) 306
CviAII CATG 2 cut(s) 202, 314
CviJI RGCY 8 cut(s) 50, 102, 180, 264, 291, 303, 325, 346
CviKI_1 RGCY 8 cut(s) 50, 102, 180, 264, 291, 303, 325, 346
DpnI GATC 1 cut(s) 117
DpnII GATC 1 cut(s) 115
Eam1104I CTCTTC 1 cut(s) 276
EarI CTCTTC 1 cut(s) 276
Eco47I GGWCC 1 cut(s) 41
Eco57I CTGAAG 1 cut(s) 300
FaeI CATG 2 cut(s) 205, 317
FaiI YATR 6 cut(s) 81, 85, 173, 203, 315, 361
FatI CATG 2 cut(s) 201, 313
FbaI TGATCA 1 cut(s) 115
Fnu4HI GCNGC 3 cut(s) 48, 301, 344
Fsp4HI GCNGC 3 cut(s) 48, 301, 344
FspBI CTAG 1 cut(s) 20
GluI GCNGC 3 cut(s) 48, 301, 344
HaeIII GGCC 1 cut(s) 291
HgaI GACGC 1 cut(s) 306
Hin1II CATG 2 cut(s) 205, 317
HindIII AAGCTT 1 cut(s) 262
Hpy188I TCNGA 1 cut(s) 168
Hpy188III TCNNGA 1 cut(s) 278
Hpy99I CGWCG 2 cut(s) 93, 300
HpyAV CCTTC 2 cut(s) 26, 249
HpyCH4V TGCA 1 cut(s) 343
HpyF10VI GCNNNNNNNGC 2 cut(s) 99, 297
Hsp92II CATG 2 cut(s) 205, 317
Ksp22I TGATCA 1 cut(s) 115
Kzo9I GATC 1 cut(s) 115
LpnPI CCDG 5 cut(s) 57, 123, 153, 179, 291
Lsp1109I GCAGC 3 cut(s) 59, 312, 355
MaeI CTAG 1 cut(s) 20
MaeIII GTNAC 1 cut(s) 5
MalI GATC 1 cut(s) 117
MboI GATC 1 cut(s) 115
MboII GAAGA 1 cut(s) 293
MluCI AATT 4 cut(s) 72, 119, 207, 273
MnlI CCTC 7 cut(s) 178, 181, 206, 246, 303, 314, 331
MseI TTAA 1 cut(s) 75
MslI CAYNNNNRTG 2 cut(s) 140, 318
MwoI GCNNNNNNNGC 2 cut(s) 99, 297
NdeII GATC 1 cut(s) 115
NlaIII CATG 2 cut(s) 205, 317
NmuCI GTSAC 1 cut(s) 5
OliI CACNNNNGTG 1 cut(s) 140
PkrI GCNGC 3 cut(s) 49, 302, 345
PsiI TTATAA 1 cut(s) 173
PspPI GGNCC 2 cut(s) 41, 290
RseI CAYNNNNRTG 2 cut(s) 140, 318
SaqAI TTAA 1 cut(s) 75
SatI GCNGC 3 cut(s) 48, 301, 344
Sau3AI GATC 1 cut(s) 115
Sau96I GGNCC 2 cut(s) 41, 290
SetI ASST 6 cut(s) 142, 192, 238, 266, 342, 348
SinI GGWCC 1 cut(s) 41
SmiMI CAYNNNNRTG 2 cut(s) 140, 318
Sse9I AATT 4 cut(s) 72, 119, 207, 273
SspMI CTAG 1 cut(s) 20
TaqI TCGA 2 cut(s) 295, 336
TasI AATT 4 cut(s) 72, 119, 207, 273
Tru1I TTAA 1 cut(s) 75
Tru9I TTAA 1 cut(s) 75
TseFI GTSAC 1 cut(s) 5
TseI GCWGC 3 cut(s) 47, 300, 343
Tsp45I GTSAC 1 cut(s) 5
TspDTI ATGAA 1 cut(s) 273
VpaK11BI GGWCC 1 cut(s) 41
XcmI CCANNNNNNNNNTGG 1 cut(s) 61
XspI CTAG 1 cut(s) 20
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.