Basic Information

Type: gene

Biological Identity

Species

rosa_samantha

Chromosome

Chr5B

Orthogroup ID

OG0006742

Physical Location & Seq

Genomic Coordinates Reverse (-)

81994726 .. 82002064

Gene Structure 7339 bp

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UTR

Exon/CDS

Intron

Transcript / Protein ID

Rh5BG518300.1

Sequence Viewer

CDS Protein Promoter (2k)

Length: 1254 bp

ATGGAAACTCTCTCATTTCCAAGCTTGCTTCAACTTCCATGTTCTCCCAAAAATCCAAGATATGTAGATAAAGAGCCACCCAAGAACGCTGTGGCTGCTAAGAATTTGCATGAAAGATTTCCCAAAAGGTTACCAAGGAGGCTGCTTTTGCAGTTTATGGGGTTCTGCCCAATCCTATCACATCCTGTTTTGGCTGCACCAATGCTGGAGATGAAGGAACCTGAAGTGATTCGGACCTTAAAGCTTCCCAGTGGTGTGAGGATCCAAGAGATTGTTGAAGGGCAAGGACCAGCAGCCACCAAAGGAGATTTGGTTGAAATTAACTATGTATGCCGTCGCACAAATGGCTATTTTGTTCATAGCACTGTTGATCAATTCAATGGAGAAAGCACACCTGTGATACTTCCTTTGGACGAAAATCAGATTATAAAAGGCTTGGAGGAGGTTCTGGTTGGCATGAGAATCGGAGGAAAGAGGAGAGCATTGATACCTCCTTCTGTGGGATACACAAATGAAAGCTTACAACCAATTCCTGAAGAGTTTGGCCCTCGACGCAGCCTCTTGTCTCATGTAAATGAGCCTCTGATATTCGAGAAAAATGCTTATAACTTAACAACCGACCATGGATGGATGCCGGTCCGAACTATTGTTGTTAGTATTCACCATTCTGCTACGAATTACAGCAAAGATGGTGCCAAAGCACTGGTGTTGACCAACCTTGACCAAAGCACTGTTGATCAATTCAGTGGAGAAAGCACACCCATGATACTTCCTGTGGACGAAAATCAGATAATAAAAGGCTTGGAGGAGGTTCTGGTTGGCATGAGAATCGGAGTTCAAGCTACATCATTGAGACGGTGGAAGCTGAATTCATCTCAGTTGATCATGTTTCTCATCTTAAACCATCTGATGGAGGTTCAGCTGCAACTCAATGAATGCACAGTGCCATCAAGATGCTCAATAGCAGAGTTAAGAGTGCTTCATCACTATCTTCTAGCTATGCAGAAAGGAGAAATACCTTGTGAGAATTTGCTGCTAAGACAAGTATCAAGTCTTCTCAGAAGGTTGCCTGCTGTTGAATCGGGGAAATTTCAAGATGACTTTTTGATGGAATACAATGACACATTGCTGATTACATATCTAGCTGTGCTTACCAACTGCTCGAGTACAATGAACGAGCTGGTCGACAAGTTCAACACCGCTTATGACAGGCATAGCCGAAGAGGTGGAGGAGGACGTACTGCTTTCTTCTGA

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0005575 GO:0005622 GO:0005623 GO:0005737 GO:0009507 GO:0009536 GO:0043226 GO:0043227 GO:0043229 GO:0043231 GO:0044424 GO:0044444 GO:0044464

KEGG Pathways

Metabolic & Signaling

No pathways identified.

Pfam Domains

Protein Families

FKBP_C

Protein Analysis

417

Amino Acids

46.92

Weight (kDa)

7.66

Isoelectric Point (pI)

48.65

Instability Index

Protein Domains (Pfam)

Domain Name	Pfam ID	Position	E-value	Description
FKBP_C	PF00254	98 - 180	3.7e-15	FKBP-type peptidyl-prolyl cis-trans isomerase
MitMem_reg	PF13012	323 - 396	1.5e-16	Maintenance of mitochondrial structure and function

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

Style Settings

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Align Labels (Cladogram)

Image

Tree File

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Publication-ready

iTOL Interactive Tree Of Life · Most popular EvolView Flexible annotations MEGA Desktop phylogenetics suite FigTree Desktop tree editor

Orthologous Genes (Group: OG0006742)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT4G26555 AT4G26555 AT4G26555
fragaria_vesca	FvH4_3g42230 FvH4_3g42230 FvH4_3g42230 FvH4_3g42230
malus_domestica	MD03G1036700.v1.1
prunus_persica	Prupe.6G028700_v2.0.a1 Prupe.6G028700_v2.0.a1
pyrus_communis	pycom03g02810 pycom11g03110
rosa_chinensis	RchiOBHm_Chr5g0075491 RchiOBHm_Chr5g0075521 RchiOBHm_Chr5g0075531
rosa_laevigata	RLG00000036573
rosa_multiflora	Rmu_co8432907.1_g000001
rosa_roxburghii	Rroxscaffold_1G00006020
rosa_rugosa	Rorug05G0440000 Rorug05G0440000
rosa_samantha	Rh5AG497100 Rh5AG497400 Rh5BG518300 Rh5CG541900 Rh5DG530800
rosa_wichuraiana	Rw5G046110

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AanI	TTATAA	2 cut(s)	428, 606
AccB1I	GGYRCC	1 cut(s)	692
AccB7I	CCANNNNNTGG	1 cut(s)	910
AccI	GTMKAC	1 cut(s)	1185
AciI	CCGC	1 cut(s)	1200
AclWI	GGATC	2 cut(s)	256, 269
AcsI	RAATTY	4 cut(s)	103, 868, 1027, 1088
AcuI	CTGAAG	2 cut(s)	243, 555
AfaI	GTAC	2 cut(s)	1168, 1240
AfiI	CCNNNNNNNGG	2 cut(s)	500, 910
AgsI	TTSAA	8 cut(s)	32, 278, 317, 379, 839, 1079, 1094, 1195
AleI	CACNNNNGTG	1 cut(s)	395
AluBI	AGCT	9 cut(s)	24, 244, 519, 842, 865, 922, 998, 1145, 1180
AluI	AGCT	9 cut(s)	24, 244, 519, 842, 865, 922, 998, 1145, 1180
Alw26I	GTCTC	2 cut(s)	570, 847
AlwI	GGATC	2 cut(s)	256, 269
Ama87I	CYCGRG	1 cut(s)	1162
AoxI	GGCC	1 cut(s)	544
ApeKI	GCWGC	7 cut(s)	95, 142, 194, 293, 555, 922, 1033
ApoI	RAATTY	4 cut(s)	103, 868, 1027, 1088
Asp700I	GAANNNNTTC	2 cut(s)	117, 228
AspS9I	GGNCC	4 cut(s)	234, 287, 545, 637
AsuHPI	GGTGA	1 cut(s)	653
AvaI	CYCGRG	1 cut(s)	1162
AvaII	GGWCC	3 cut(s)	234, 287, 637
BamHI	GGATCC	1 cut(s)	261
BanI	GGYRCC	1 cut(s)	692
BarI	GAAGNNNNNNTAC	2 cut(s)	1038, 1070
BbsI	GAAGAC	1 cut(s)	1046
BbvI	GCAGC	7 cut(s)	82, 129, 181, 305, 567, 909, 1020
BccI	CCATC	6 cut(s)	621, 683, 904, 912, 955, 1102
BceAI	ACGGC	1 cut(s)	318
BcgI	CGANNNNNNTGC	6 cut(s)	445, 479, 581, 615, 811, 845
BciVI	GTATCC	1 cut(s)	497
BclI	TGATCA	3 cut(s)	370, 736, 882
BcoDI	GTCTC	2 cut(s)	570, 847
BfaI	CTAG	2 cut(s)	995, 1142
BfuI	GTATCC	1 cut(s)	497
BisI	GCNGC	7 cut(s)	96, 143, 195, 294, 556, 923, 1034
BlsI	GCNGC	7 cut(s)	97, 144, 196, 295, 557, 924, 1035
Bme18I	GGWCC	3 cut(s)	234, 287, 637
BmeT110I	CYCGRG	1 cut(s)	1162
BmgT120I	GGNCC	4 cut(s)	234, 287, 545, 637
BmiI	GGNNCC	3 cut(s)	219, 263, 694
BmrI	ACTGGG	1 cut(s)	243
BmsI	GCATC	2 cut(s)	621, 944
BmuI	ACTGGG	1 cut(s)	243
BpiI	GAAGAC	1 cut(s)	1046
BpmI	CTGGAG	1 cut(s)	227
BsaJI	CCNNGG	2 cut(s)	134, 622
BsaXI	ACNNNNNCTCC	2 cut(s)	297, 327
Bsc4I	CCNNNNNNNGG	2 cut(s)	500, 910
Bse118I	RCCGGY	1 cut(s)	634
Bse1I	ACTGG	2 cut(s)	249, 708
Bse3DI	GCAATG	1 cut(s)	1124
BseDI	CCNNGG	2 cut(s)	134, 622
BseGI	GGATG	3 cut(s)	181, 632, 636
BseLI	CCNNNNNNNGG	2 cut(s)	500, 910
BseMI	GCAATG	1 cut(s)	1124
BseMII	CTCAG	2 cut(s)	890, 1072
BseNI	ACTGG	2 cut(s)	249, 708
BseRI	GAGGAG	4 cut(s)	455, 490, 821, 1245
BseXI	GCAGC	7 cut(s)	82, 129, 181, 305, 567, 909, 1020
BsgI	GTGCAG	1 cut(s)	180
BshFI	GGCC	1 cut(s)	546
BshNI	GGYRCC	1 cut(s)	692
BsiHKCI	CYCGRG	1 cut(s)	1162
BsiSI	CCGG	1 cut(s)	635
BslI	CCNNNNNNNGG	2 cut(s)	500, 910
BsmAI	GTCTC	2 cut(s)	570, 847
BsmBI	CGTCTC	1 cut(s)	847
BsmI	GAATGC	1 cut(s)	941
BsnI	GGCC	1 cut(s)	546
BsoBI	CYCGRG	1 cut(s)	1162
Bsp143I	GATC	4 cut(s)	261, 370, 736, 882
Bsp19I	CCATGG	1 cut(s)	622
BspACI	CCGC	1 cut(s)	1200
BspANI	GGCC	1 cut(s)	546
BspCNI	CTCAG	2 cut(s)	889, 1071
BspLI	GGNNCC	3 cut(s)	219, 263, 694
BspPI	GGATC	2 cut(s)	256, 269
BspT107I	GGYRCC	1 cut(s)	692
BsrDI	GCAATG	1 cut(s)	1124
BsrFI	RCCGGY	1 cut(s)	634
BsrI	ACTGG	2 cut(s)	249, 708
BssAI	RCCGGY	1 cut(s)	634
BssECI	CCNNGG	2 cut(s)	134, 622
BssMI	GATC	4 cut(s)	261, 370, 736, 882
BssT1I	CCWWGG	2 cut(s)	134, 622
Bst4CI	ACNGT	4 cut(s)	367, 733, 858, 943
Bst6I	CTCTTC	2 cut(s)	531, 1216
BstC8I	GCNNGC	2 cut(s)	26, 1071
BstDEI	CTNAG	4 cut(s)	99, 876, 1037, 1058
BstDSI	CCRYGG	1 cut(s)	622
BstEII	GGTNACC	1 cut(s)	129
BstF5I	GGATG	3 cut(s)	181, 632, 636
BstKTI	GATC	4 cut(s)	264, 373, 739, 885
BstMAI	GTCTC	2 cut(s)	570, 847
BstMBI	GATC	4 cut(s)	261, 370, 736, 882
BstMWI	GCNNNNNNNGC	4 cut(s)	95, 148, 345, 552
BstPI	GGTNACC	1 cut(s)	129
BstV1I	GCAGC	7 cut(s)	82, 129, 181, 305, 567, 909, 1020
BstV2I	GAAGAC	1 cut(s)	1046
BstX2I	RGATCY	1 cut(s)	261
BstXI	CCANNNNNNTGG	1 cut(s)	703
BstYI	RGATCY	1 cut(s)	261
BsuI	GTATCC	1 cut(s)	497
BsuRI	GGCC	1 cut(s)	546
BtgI	CCRYGG	1 cut(s)	622
BtsCI	GGATG	3 cut(s)	181, 632, 636
BtsIMutI	CAGTG	6 cut(s)	256, 363, 701, 729, 751, 948
Cac8I	GCNNGC	2 cut(s)	26, 1071
Cfr10I	RCCGGY	1 cut(s)	634
Cfr13I	GGNCC	4 cut(s)	234, 287, 545, 637
CpoI	CGGWCCG	1 cut(s)	637
CseI	GACGC	1 cut(s)	561
Csp6I	GTAC	2 cut(s)	1167, 1239
CspI	CGGWCCG	1 cut(s)	637
CviAII	CATG	8 cut(s)	39, 110, 457, 569, 623, 763, 823, 886
CviQI	GTAC	2 cut(s)	1167, 1239
DdeI	CTNAG	4 cut(s)	99, 876, 1037, 1058
DpnI	GATC	4 cut(s)	263, 372, 738, 884
DpnII	GATC	4 cut(s)	261, 370, 736, 882
Eam1104I	CTCTTC	2 cut(s)	531, 1216
EarI	CTCTTC	2 cut(s)	531, 1216
Eco130I	CCWWGG	2 cut(s)	134, 622
Eco47I	GGWCC	3 cut(s)	234, 287, 637
Eco57I	CTGAAG	2 cut(s)	243, 555
Eco88I	CYCGRG	1 cut(s)	1162
Eco91I	GGTNACC	1 cut(s)	129
EcoO65I	GGTNACC	1 cut(s)	129
EcoRI	GAATTC	1 cut(s)	868
EcoT14I	CCWWGG	2 cut(s)	134, 622
ErhI	CCWWGG	2 cut(s)	134, 622
Esp3I	CGTCTC	1 cut(s)	847
FaeI	CATG	8 cut(s)	42, 113, 460, 572, 626, 766, 826, 889
FatI	CATG	8 cut(s)	38, 109, 456, 568, 622, 762, 822, 885
FbaI	TGATCA	3 cut(s)	370, 736, 882
FblI	GTMKAC	1 cut(s)	1185
Fnu4HI	GCNGC	7 cut(s)	96, 143, 195, 294, 556, 923, 1034
FokI	GGATG	3 cut(s)	168, 639, 643
Fsp4HI	GCNGC	7 cut(s)	96, 143, 195, 294, 556, 923, 1034
FspBI	CTAG	2 cut(s)	995, 1142
GluI	GCNGC	7 cut(s)	96, 143, 195, 294, 556, 923, 1034
GsuI	CTGGAG	1 cut(s)	227
HaeIII	GGCC	1 cut(s)	546
HapII	CCGG	1 cut(s)	635
HgaI	GACGC	1 cut(s)	561
Hin1II	CATG	8 cut(s)	42, 113, 460, 572, 626, 766, 826, 889
HincII	GTYRAC	2 cut(s)	711, 1186
HindII	GTYRAC	2 cut(s)	711, 1186
HindIII	AAGCTT	3 cut(s)	22, 242, 517
HinfI	GANTC	4 cut(s)	229, 462, 828, 1079
HpaII	CCGG	1 cut(s)	635
HphI	GGTGA	1 cut(s)	653
Hpy166II	GTNNAC	3 cut(s)	711, 778, 1186
Hpy188III	TCNNGA	4 cut(s)	533, 592, 951, 1094
Hpy8I	GTNNAC	3 cut(s)	711, 778, 1186
Hpy99I	CGWCG	2 cut(s)	339, 555
HpyAV	CCTTC	4 cut(s)	208, 272, 504, 1056
HpyCH4III	ACNGT	4 cut(s)	367, 733, 858, 943
HpyCH4IV	ACGT	1 cut(s)	1237
HpyCH4V	TGCA	6 cut(s)	109, 151, 197, 925, 939, 1003
HpyF10VI	GCNNNNNNNGC	4 cut(s)	95, 148, 345, 552
HpyF3I	CTNAG	4 cut(s)	99, 876, 1037, 1058
HpySE526I	ACGT	1 cut(s)	1237
Hsp92II	CATG	8 cut(s)	42, 113, 460, 572, 626, 766, 826, 889
Ksp22I	TGATCA	3 cut(s)	370, 736, 882
Kzo9I	GATC	4 cut(s)	261, 370, 736, 882
Lsp1109I	GCAGC	7 cut(s)	82, 129, 181, 305, 567, 909, 1020
LweI	GCATC	2 cut(s)	621, 944
MaeI	CTAG	2 cut(s)	995, 1142
MaeII	ACGT	1 cut(s)	1237
MaeIII	GTNAC	1 cut(s)	129
MalI	GATC	4 cut(s)	263, 372, 738, 884
MboI	GATC	4 cut(s)	261, 370, 736, 882
MboII	GAAGA	5 cut(s)	548, 983, 1046, 1233, 1240
MflI	RGATCY	1 cut(s)	261
MluCI	AATT	9 cut(s)	103, 318, 374, 528, 676, 740, 868, 1027, 1088
MroXI	GAANNNNTTC	2 cut(s)	117, 228
MseI	TTAA	5 cut(s)	239, 321, 611, 899, 971
MslI	CAYNNNNRTG	4 cut(s)	395, 573, 761, 952
MspA1I	CMGCKG	1 cut(s)	922
MspI	CCGG	1 cut(s)	635
Mva1269I	GAATGC	1 cut(s)	941
MwoI	GCNNNNNNNGC	4 cut(s)	95, 148, 345, 552
NcoI	CCATGG	1 cut(s)	622
NdeII	GATC	4 cut(s)	261, 370, 736, 882
NlaIII	CATG	8 cut(s)	42, 113, 460, 572, 626, 766, 826, 889
NlaIV	GGNNCC	3 cut(s)	219, 263, 694
OliI	CACNNNNGTG	1 cut(s)	395
PaeR7I	CTCGAG	1 cut(s)	1162
PcsI	WCGNNNNNNNCGW	1 cut(s)	1182
PctI	GAATGC	1 cut(s)	941
PdmI	GAANNNNTTC	2 cut(s)	117, 228
PfeI	GAWTC	4 cut(s)	229, 462, 828, 1079
PflMI	CCANNNNNTGG	1 cut(s)	910
PkrI	GCNGC	7 cut(s)	97, 144, 196, 295, 557, 924, 1035
PsiI	TTATAA	2 cut(s)	428, 606
PspEI	GGTNACC	1 cut(s)	129
PspN4I	GGNNCC	3 cut(s)	219, 263, 694
PspPI	GGNCC	4 cut(s)	234, 287, 545, 637
PspXI	VCTCGAGB	1 cut(s)	1162
PsuI	RGATCY	1 cut(s)	261
PvuII	CAGCTG	1 cut(s)	922
RsaI	GTAC	2 cut(s)	1168, 1240
RsaNI	GTAC	2 cut(s)	1167, 1239
RseI	CAYNNNNRTG	4 cut(s)	395, 573, 761, 952
Rsr2I	CGGWCCG	1 cut(s)	637
RsrII	CGGWCCG	1 cut(s)	637
SalI	GTCGAC	1 cut(s)	1184
SaqAI	TTAA	5 cut(s)	239, 321, 611, 899, 971
SatI	GCNGC	7 cut(s)	96, 143, 195, 294, 556, 923, 1034
Sau3AI	GATC	4 cut(s)	261, 370, 736, 882
Sau96I	GGNCC	4 cut(s)	234, 287, 545, 637
SfaNI	GCATC	2 cut(s)	621, 944
Sfr274I	CTCGAG	1 cut(s)	1162
SinI	GGWCC	3 cut(s)	234, 287, 637
SlaI	CTCGAG	1 cut(s)	1162
SmiMI	CAYNNNNRTG	4 cut(s)	395, 573, 761, 952
SmlI	CTYRAG	1 cut(s)	1162
SmoI	CTYRAG	1 cut(s)	1162
Sse9I	AATT	9 cut(s)	103, 318, 374, 528, 676, 740, 868, 1027, 1088
SsiI	CCGC	1 cut(s)	1200
SspMI	CTAG	2 cut(s)	995, 1142
StyI	CCWWGG	2 cut(s)	134, 622
TaaI	ACNGT	4 cut(s)	367, 733, 858, 943
TaiI	ACGT	1 cut(s)	1240
TaqI	TCGA	4 cut(s)	550, 591, 1163, 1185
TasI	AATT	9 cut(s)	103, 318, 374, 528, 676, 740, 868, 1027, 1088
TatI	WGTACW	1 cut(s)	1166
TfiI	GAWTC	4 cut(s)	229, 462, 828, 1079
Tru1I	TTAA	5 cut(s)	239, 321, 611, 899, 971
Tru9I	TTAA	5 cut(s)	239, 321, 611, 899, 971
TscAI	CASTG	6 cut(s)	256, 370, 708, 736, 751, 948
TseI	GCWGC	7 cut(s)	95, 142, 194, 293, 555, 922, 1033
TspDTI	ATGAA	8 cut(s)	126, 227, 347, 528, 861, 948, 971, 1187
TspRI	CASTG	6 cut(s)	256, 370, 708, 736, 751, 948
Van91I	CCANNNNNTGG	1 cut(s)	910
VpaK11BI	GGWCC	3 cut(s)	234, 287, 637
XapI	RAATTY	4 cut(s)	103, 868, 1027, 1088
XcmI	CCANNNNNNNNNTGG	2 cut(s)	88, 307
XhoI	CTCGAG	1 cut(s)	1162
XmiI	GTMKAC	1 cut(s)	1185
XmnI	GAANNNNTTC	2 cut(s)	117, 228
XspI	CTAG	2 cut(s)	995, 1142

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.