Basic Information

Type: gene

Biological Identity

Species

rosa_samantha

Chromosome

Chr5D

Orthogroup ID

OG0006742

Physical Location & Seq

Genomic Coordinates Forward (+)

81877827 .. 81882803

Gene Structure 4977 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

Rh5DG530800.1

Sequence Viewer

CDS Protein Promoter (2k)

Length: 807 bp

ATGGAAACTCTCTCATTTCCAAGCTTCCTTCAATTCCCATGTTCTCCCAAAAATCCAAGATTTGTAGATAAAGAGCCAGCCAAGAACAATGTGGCTGCTAAGAACTTGCATGAAAGACTTCCCAAAAGATTACCAAGGAGGCTGCTTTTGCAGTTTATGGGGTTCTTCCCAATCCTATCACATCCTGTTTTGGCTGCACCAATGCCGGAGATGAAGGAACCTGAAGTGATCCGGACCTTAAAGCTTCCCAGTGGTGTGAGGATCCAAGAGATTGTTGAAGGGCAAGGACCTGCAGCCACCAAAGGAGATTTGGTTGAAATTAACTATGTATGCCGTCGCACAAATGGCTATTTTGTTCATAGCACTGTTGATCAATTCAATGGAGAAAGCACACCCGTGATACTTCCTGTGGACAAAAATCAGATTATAAAAGGCTTGGAAGAGGTTCTGGTTGGCATGAGAATCGGAGGAAAGAGGAGAGCATTGATACCTCCTTCTGTGGGATACACAAATGAAAGCTTACAACCAATTCCTGAAGAGTTTGGCCCTCGACGCAGCCTCTTGTCTCATGTAAATGAGCCTCTGATATTCGAGATTATAAAAGGCTTGGAGGAGGTTCTGGTTGGCATGAGAATCGGAGGAAAGAGGAGAGCATTGATAACTCCTTCTGTGGGATACACAAGTGAAAGCTTACAACCAATTCCTGAAGAGTTTGGGCCTCGACGCAGCCTCTTATCTCATGTAAATGAGCCTTTGATATTCGAGCTTCAAGAGCTGCAATATATAATTCCATGCCTAGTGGATTAG

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0005575 GO:0005622 GO:0005623 GO:0005737 GO:0009507 GO:0009536 GO:0043226 GO:0043227 GO:0043229 GO:0043231 GO:0044424 GO:0044444 GO:0044464

KEGG Pathways

Metabolic & Signaling

No pathways identified.

Pfam Domains

Protein Families

FKBP_C

Protein Analysis

268

Amino Acids

30.1

Weight (kDa)

8.41

Isoelectric Point (pI)

58.54

Instability Index

Protein Domains (Pfam)

Domain Name	Pfam ID	Position	E-value	Description
FKBP_C	PF00254	98 - 199	7.5e-16	FKBP-type peptidyl-prolyl cis-trans isomerase
FKBP_C	PF00254	198 - 255	1.2e-06	FKBP-type peptidyl-prolyl cis-trans isomerase

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

Style Settings

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Align Labels (Cladogram)

Image

Tree File

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Publication-ready

iTOL Interactive Tree Of Life · Most popular EvolView Flexible annotations MEGA Desktop phylogenetics suite FigTree Desktop tree editor

Orthologous Genes (Group: OG0006742)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT4G26555 AT4G26555 AT4G26555
fragaria_vesca	FvH4_3g42230 FvH4_3g42230 FvH4_3g42230 FvH4_3g42230
malus_domestica	MD03G1036700.v1.1
prunus_persica	Prupe.6G028700_v2.0.a1 Prupe.6G028700_v2.0.a1
pyrus_communis	pycom03g02810 pycom11g03110
rosa_chinensis	RchiOBHm_Chr5g0075491 RchiOBHm_Chr5g0075521 RchiOBHm_Chr5g0075531
rosa_laevigata	RLG00000036573
rosa_multiflora	Rmu_co8432907.1_g000001
rosa_roxburghii	Rroxscaffold_1G00006020
rosa_rugosa	Rorug05G0440000 Rorug05G0440000
rosa_samantha	Rh5AG497100 Rh5AG497400 Rh5BG518300 Rh5CG541900 Rh5DG530800
rosa_wichuraiana	Rw5G046110

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AanI	TTATAA	2 cut(s)	428, 599
Acc36I	ACCTGC	1 cut(s)	298
AccIII	TCCGGA	1 cut(s)	231
AclWI	GGATC	3 cut(s)	223, 256, 269
AcuI	CTGAAG	3 cut(s)	243, 555, 726
AfiI	CCNNNNNNNGG	2 cut(s)	500, 671
AgsI	TTSAA	5 cut(s)	32, 278, 317, 379, 770
AleI	CACNNNNGTG	1 cut(s)	395
AluBI	AGCT	6 cut(s)	24, 244, 519, 690, 766, 775
AluI	AGCT	6 cut(s)	24, 244, 519, 690, 766, 775
Alw26I	GTCTC	1 cut(s)	570
AlwI	GGATC	3 cut(s)	223, 256, 269
Aor13HI	TCCGGA	1 cut(s)	231
AoxI	GGCC	2 cut(s)	544, 716
ApeKI	GCWGC	7 cut(s)	95, 142, 194, 293, 555, 726, 775
Asp700I	GAANNNNTTC	2 cut(s)	117, 444
AspS9I	GGNCC	4 cut(s)	234, 287, 545, 716
AvaII	GGWCC	2 cut(s)	234, 287
BaeI	ACNNNNGTAYC	2 cut(s)	667, 700
BamHI	GGATCC	1 cut(s)	261
BbvI	GCAGC	7 cut(s)	82, 129, 181, 305, 567, 738, 762
BceAI	ACGGC	1 cut(s)	318
BcgI	CGANNNNNNTGC	4 cut(s)	445, 479, 616, 650
BciVI	GTATCC	2 cut(s)	497, 668
BclI	TGATCA	1 cut(s)	370
BcoDI	GTCTC	1 cut(s)	570
BfaI	CTAG	1 cut(s)	797
BfmI	CTRYAG	1 cut(s)	291
BfuAI	ACCTGC	1 cut(s)	298
BfuI	GTATCC	2 cut(s)	497, 668
BisI	GCNGC	7 cut(s)	96, 143, 195, 294, 556, 727, 776
BlsI	GCNGC	7 cut(s)	97, 144, 196, 295, 557, 728, 777
Bme18I	GGWCC	2 cut(s)	234, 287
BmgT120I	GGNCC	4 cut(s)	234, 287, 545, 716
BmiI	GGNNCC	2 cut(s)	219, 263
BmrI	ACTGGG	1 cut(s)	243
BmuI	ACTGGG	1 cut(s)	243
BsaJI	CCNNGG	1 cut(s)	134
BsaWI	WCCGGW	1 cut(s)	231
BsaXI	ACNNNNNCTCC	2 cut(s)	297, 327
Bsc4I	CCNNNNNNNGG	2 cut(s)	500, 671
Bse1I	ACTGG	1 cut(s)	249
BseAI	TCCGGA	1 cut(s)	231
BseDI	CCNNGG	1 cut(s)	134
BseGI	GGATG	1 cut(s)	181
BseLI	CCNNNNNNNGG	2 cut(s)	500, 671
BseNI	ACTGG	1 cut(s)	249
BseRI	GAGGAG	3 cut(s)	490, 626, 661
BseXI	GCAGC	7 cut(s)	82, 129, 181, 305, 567, 738, 762
BsgI	GTGCAG	1 cut(s)	180
BshFI	GGCC	2 cut(s)	546, 718
BsiSI	CCGG	2 cut(s)	206, 232
BslI	CCNNNNNNNGG	2 cut(s)	500, 671
BsmAI	GTCTC	1 cut(s)	570
BsnI	GGCC	2 cut(s)	546, 718
Bsp13I	TCCGGA	1 cut(s)	231
Bsp143I	GATC	3 cut(s)	228, 261, 370
BspANI	GGCC	2 cut(s)	546, 718
BspEI	TCCGGA	1 cut(s)	231
BspLI	GGNNCC	2 cut(s)	219, 263
BspMAI	CTGCAG	1 cut(s)	295
BspMI	ACCTGC	1 cut(s)	298
BspPI	GGATC	3 cut(s)	223, 256, 269
BsrI	ACTGG	1 cut(s)	249
BssECI	CCNNGG	1 cut(s)	134
BssMI	GATC	3 cut(s)	228, 261, 370
BssT1I	CCWWGG	1 cut(s)	134
Bst4CI	ACNGT	1 cut(s)	367
Bst6I	CTCTTC	3 cut(s)	435, 531, 702
BstC8I	GCNNGC	1 cut(s)	78
BstDEI	CTNAG	1 cut(s)	99
BstF5I	GGATG	1 cut(s)	181
BstKTI	GATC	3 cut(s)	231, 264, 373
BstMAI	GTCTC	1 cut(s)	570
BstMBI	GATC	3 cut(s)	228, 261, 370
BstMWI	GCNNNNNNNGC	4 cut(s)	148, 345, 552, 772
BstSFI	CTRYAG	1 cut(s)	291
BstV1I	GCAGC	7 cut(s)	82, 129, 181, 305, 567, 738, 762
BstX2I	RGATCY	1 cut(s)	261
BstYI	RGATCY	1 cut(s)	261
BsuI	GTATCC	2 cut(s)	497, 668
BsuRI	GGCC	2 cut(s)	546, 718
BtsCI	GGATG	1 cut(s)	181
BtsIMutI	CAGTG	2 cut(s)	256, 363
BveI	ACCTGC	1 cut(s)	298
Cac8I	GCNNGC	1 cut(s)	78
Cfr13I	GGNCC	4 cut(s)	234, 287, 545, 716
CseI	GACGC	2 cut(s)	561, 732
CviAII	CATG	7 cut(s)	39, 110, 457, 569, 628, 740, 792
DdeI	CTNAG	1 cut(s)	99
DpnI	GATC	3 cut(s)	230, 263, 372
DpnII	GATC	3 cut(s)	228, 261, 370
Eam1104I	CTCTTC	3 cut(s)	435, 531, 702
EarI	CTCTTC	3 cut(s)	435, 531, 702
Eco130I	CCWWGG	1 cut(s)	134
Eco47I	GGWCC	2 cut(s)	234, 287
Eco57I	CTGAAG	3 cut(s)	243, 555, 726
EcoO109I	RGGNCCY	1 cut(s)	287
EcoT14I	CCWWGG	1 cut(s)	134
ErhI	CCWWGG	1 cut(s)	134
FaeI	CATG	7 cut(s)	42, 113, 460, 572, 631, 743, 795
FatI	CATG	7 cut(s)	38, 109, 456, 568, 627, 739, 791
FbaI	TGATCA	1 cut(s)	370
Fnu4HI	GCNGC	7 cut(s)	96, 143, 195, 294, 556, 727, 776
FokI	GGATG	1 cut(s)	168
Fsp4HI	GCNGC	7 cut(s)	96, 143, 195, 294, 556, 727, 776
FspBI	CTAG	1 cut(s)	797
GluI	GCNGC	7 cut(s)	96, 143, 195, 294, 556, 727, 776
HaeIII	GGCC	2 cut(s)	546, 718
HapII	CCGG	2 cut(s)	206, 232
HgaI	GACGC	2 cut(s)	561, 732
Hin1II	CATG	7 cut(s)	42, 113, 460, 572, 631, 743, 795
HindIII	AAGCTT	4 cut(s)	22, 242, 517, 688
HinfI	GANTC	2 cut(s)	462, 633
HpaII	CCGG	2 cut(s)	206, 232
Hpy166II	GTNNAC	1 cut(s)	412
Hpy188I	TCNGA	4 cut(s)	423, 467, 585, 638
Hpy188III	TCNNGA	5 cut(s)	232, 533, 592, 704, 770
Hpy8I	GTNNAC	1 cut(s)	412
Hpy99I	CGWCG	3 cut(s)	339, 555, 726
HpyAV	CCTTC	5 cut(s)	38, 208, 272, 504, 675
HpyCH4III	ACNGT	1 cut(s)	367
HpyCH4V	TGCA	5 cut(s)	109, 151, 197, 293, 778
HpyF10VI	GCNNNNNNNGC	4 cut(s)	148, 345, 552, 772
HpyF3I	CTNAG	1 cut(s)	99
Hsp92II	CATG	7 cut(s)	42, 113, 460, 572, 631, 743, 795
Kpn2I	TCCGGA	1 cut(s)	231
Ksp22I	TGATCA	1 cut(s)	370
Kzo9I	GATC	3 cut(s)	228, 261, 370
Lsp1109I	GCAGC	7 cut(s)	82, 129, 181, 305, 567, 738, 762
MaeI	CTAG	1 cut(s)	797
MalI	GATC	3 cut(s)	230, 263, 372
MboI	GATC	3 cut(s)	228, 261, 370
MboII	GAAGA	4 cut(s)	157, 452, 548, 719
MflI	RGATCY	1 cut(s)	261
MluCI	AATT	6 cut(s)	32, 318, 374, 528, 699, 786
MroI	TCCGGA	1 cut(s)	231
MroXI	GAANNNNTTC	2 cut(s)	117, 444
MseI	TTAA	2 cut(s)	239, 321
MslI	CAYNNNNRTG	3 cut(s)	395, 573, 744
MspI	CCGG	2 cut(s)	206, 232
MwoI	GCNNNNNNNGC	4 cut(s)	148, 345, 552, 772
NdeII	GATC	3 cut(s)	228, 261, 370
NlaIII	CATG	7 cut(s)	42, 113, 460, 572, 631, 743, 795
NlaIV	GGNNCC	2 cut(s)	219, 263
OliI	CACNNNNGTG	1 cut(s)	395
PdmI	GAANNNNTTC	2 cut(s)	117, 444
PfeI	GAWTC	2 cut(s)	462, 633
PkrI	GCNGC	7 cut(s)	97, 144, 196, 295, 557, 728, 777
PpuMI	RGGWCCY	1 cut(s)	287
PsiI	TTATAA	2 cut(s)	428, 599
Psp5II	RGGWCCY	1 cut(s)	287
PspN4I	GGNNCC	2 cut(s)	219, 263
PspPI	GGNCC	4 cut(s)	234, 287, 545, 716
PspPPI	RGGWCCY	1 cut(s)	287
PstI	CTGCAG	1 cut(s)	295
PsuI	RGATCY	1 cut(s)	261
RseI	CAYNNNNRTG	3 cut(s)	395, 573, 744
SaqAI	TTAA	2 cut(s)	239, 321
SatI	GCNGC	7 cut(s)	96, 143, 195, 294, 556, 727, 776
Sau3AI	GATC	3 cut(s)	228, 261, 370
Sau96I	GGNCC	4 cut(s)	234, 287, 545, 716
SfcI	CTRYAG	1 cut(s)	291
SinI	GGWCC	2 cut(s)	234, 287
SmiMI	CAYNNNNRTG	3 cut(s)	395, 573, 744
Sse9I	AATT	6 cut(s)	32, 318, 374, 528, 699, 786
SspMI	CTAG	1 cut(s)	797
StyI	CCWWGG	1 cut(s)	134
TaaI	ACNGT	1 cut(s)	367
TaqI	TCGA	4 cut(s)	550, 591, 721, 762
TasI	AATT	6 cut(s)	32, 318, 374, 528, 699, 786
TfiI	GAWTC	2 cut(s)	462, 633
Tru1I	TTAA	2 cut(s)	239, 321
Tru9I	TTAA	2 cut(s)	239, 321
TscAI	CASTG	2 cut(s)	256, 370
TseI	GCWGC	7 cut(s)	95, 142, 194, 293, 555, 726, 775
TspDTI	ATGAA	4 cut(s)	126, 227, 347, 528
TspRI	CASTG	2 cut(s)	256, 370
VpaK11BI	GGWCC	2 cut(s)	234, 287
XcmI	CCANNNNNNNNNTGG	2 cut(s)	88, 307
XmnI	GAANNNNTTC	2 cut(s)	117, 444
XspI	CTAG	1 cut(s)	797

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.