Basic Information

Type: gene

Biological Identity

Species

rosa_multiflora

Chromosome

Rmu_co8432907.1

Orthogroup ID

OG0006742

Physical Location & Seq

Genomic Coordinates Reverse (-)

307 .. 1416

Gene Structure 1110 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

Rmu_co8432907.1_g000001.1.cds

Sequence Viewer

CDS Protein Promoter (2k)

Length: 393 bp

atggggttctgcccaatcctatcacatcctgttttggctgcaccaatgccggagatgaaggaacctgaagtgattcgcttccaggaccttaaagcttcccagtggtgtgaggatccaaggtacagaatttataagattccacataatgctgcttactcaggaaggattttgcctgtaattgagattgttgaagggcaaggaccagcagccaccaaaggagatttggttgaaattaactatgtatgccgtcgcacaaatggctattttgttcatagcactgttgatcaattcaatggagaaagcacacctgtgatacttcctttggacgaaaatcagattataaaaggcttggaggaggttctggttggcatgagaatcggaggtgtgttctaa

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0005575 GO:0005622 GO:0005623 GO:0005737 GO:0009507 GO:0009536 GO:0043226 GO:0043227 GO:0043229 GO:0043231 GO:0044424 GO:0044444 GO:0044464

KEGG Pathways

Metabolic & Signaling

No pathways identified.

Pfam Domains

Protein Families

FKBP_C

Protein Analysis

130

Amino Acids

14.54

Weight (kDa)

5.32

Isoelectric Point (pI)

40.06

Instability Index

Protein Domains (Pfam)

No Pfam domains detected for this protein.

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

Style Settings

Font Size (px)

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Align Labels (Cladogram)

Image

Tree File

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Publication-ready

iTOL Interactive Tree Of Life · Most popular EvolView Flexible annotations MEGA Desktop phylogenetics suite FigTree Desktop tree editor

Orthologous Genes (Group: OG0006742)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT4G26555 AT4G26555 AT4G26555
fragaria_vesca	FvH4_3g42230 FvH4_3g42230 FvH4_3g42230 FvH4_3g42230
malus_domestica	MD03G1036700.v1.1
prunus_persica	Prupe.6G028700_v2.0.a1 Prupe.6G028700_v2.0.a1
pyrus_communis	pycom03g02810 pycom11g03110
rosa_chinensis	RchiOBHm_Chr5g0075491 RchiOBHm_Chr5g0075521 RchiOBHm_Chr5g0075531
rosa_laevigata	RLG00000036573
rosa_multiflora	Rmu_co8432907.1_g000001
rosa_roxburghii	Rroxscaffold_1G00006020
rosa_rugosa	Rorug05G0440000 Rorug05G0440000
rosa_samantha	Rh5AG497100 Rh5AG497400 Rh5BG518300 Rh5CG541900 Rh5DG530800
rosa_wichuraiana	Rw5G046110

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AanI	TTATAA	2 cut(s)	132, 341
AclWI	GGATC	2 cut(s)	107, 120
AcsI	RAATTY	1 cut(s)	126
AcuI	CTGAAG	1 cut(s)	87
AfaI	GTAC	1 cut(s)	122
AgsI	TTSAA	3 cut(s)	191, 230, 292
AjnI	CCWGG	1 cut(s)	81
AleI	CACNNNNGTG	1 cut(s)	308
AluBI	AGCT	1 cut(s)	95
AluI	AGCT	1 cut(s)	95
AlwI	GGATC	2 cut(s)	107, 120
ApeKI	GCWGC	3 cut(s)	38, 149, 206
ApoI	RAATTY	1 cut(s)	126
Asp700I	GAANNNNTTC	1 cut(s)	72
AspS9I	GGNCC	2 cut(s)	85, 200
AvaII	GGWCC	2 cut(s)	85, 200
BamHI	GGATCC	1 cut(s)	112
BbvI	GCAGC	3 cut(s)	25, 136, 218
BceAI	ACGGC	1 cut(s)	231
BcgI	CGANNNNNNTGC	2 cut(s)	358, 392
BciT130I	CCWGG	1 cut(s)	83
BclI	TGATCA	1 cut(s)	283
BisI	GCNGC	3 cut(s)	39, 150, 207
BlsI	GCNGC	3 cut(s)	40, 151, 208
Bme1390I	CCNGG	1 cut(s)	83
Bme18I	GGWCC	2 cut(s)	85, 200
BmgT120I	GGNCC	2 cut(s)	85, 200
BmiI	GGNNCC	2 cut(s)	63, 114
BmrFI	CCNGG	1 cut(s)	83
BmrI	ACTGGG	1 cut(s)	94
BmuI	ACTGGG	1 cut(s)	94
BsaJI	CCNNGG	1 cut(s)	116
BsaXI	ACNNNNNCTCC	2 cut(s)	210, 240
Bse1I	ACTGG	1 cut(s)	100
BseBI	CCWGG	1 cut(s)	83
BseDI	CCNNGG	1 cut(s)	116
BseGI	GGATG	1 cut(s)	25
BseMII	CTCAG	1 cut(s)	171
BseNI	ACTGG	1 cut(s)	100
BseRI	GAGGAG	1 cut(s)	368
BseXI	GCAGC	3 cut(s)	25, 136, 218
BsgI	GTGCAG	1 cut(s)	24
BsiSI	CCGG	1 cut(s)	50
Bsp143I	GATC	2 cut(s)	112, 283
BspCNI	CTCAG	1 cut(s)	170
BspLI	GGNNCC	2 cut(s)	63, 114
BspPI	GGATC	2 cut(s)	107, 120
BsrI	ACTGG	1 cut(s)	100
BssECI	CCNNGG	1 cut(s)	116
BssMI	GATC	2 cut(s)	112, 283
BssT1I	CCWWGG	1 cut(s)	116
Bst2UI	CCWGG	1 cut(s)	83
Bst4CI	ACNGT	1 cut(s)	280
BstDEI	CTNAG	1 cut(s)	157
BstF5I	GGATG	1 cut(s)	25
BstKTI	GATC	2 cut(s)	115, 286
BstMBI	GATC	2 cut(s)	112, 283
BstMWI	GCNNNNNNNGC	1 cut(s)	258
BstNI	CCWGG	1 cut(s)	83
BstSCI	CCNGG	1 cut(s)	81
BstV1I	GCAGC	3 cut(s)	25, 136, 218
BstX2I	RGATCY	1 cut(s)	112
BstYI	RGATCY	1 cut(s)	112
BtsCI	GGATG	1 cut(s)	25
BtsIMutI	CAGTG	2 cut(s)	107, 276
Cfr13I	GGNCC	2 cut(s)	85, 200
Csp6I	GTAC	1 cut(s)	121
CviAII	CATG	1 cut(s)	370
CviJI	RGCY	5 cut(s)	38, 95, 209, 261, 348
CviKI_1	RGCY	5 cut(s)	38, 95, 209, 261, 348
CviQI	GTAC	1 cut(s)	121
DdeI	CTNAG	1 cut(s)	157
DpnI	GATC	2 cut(s)	114, 285
DpnII	GATC	2 cut(s)	112, 283
Eco130I	CCWWGG	1 cut(s)	116
Eco47I	GGWCC	2 cut(s)	85, 200
Eco57I	CTGAAG	1 cut(s)	87
EcoO109I	RGGNCCY	1 cut(s)	85
EcoRII	CCWGG	1 cut(s)	81
EcoT14I	CCWWGG	1 cut(s)	116
ErhI	CCWWGG	1 cut(s)	116
FaeI	CATG	1 cut(s)	373
FaiI	YATR	7 cut(s)	132, 144, 240, 244, 273, 341, 371
FatI	CATG	1 cut(s)	369
FbaI	TGATCA	1 cut(s)	283
Fnu4HI	GCNGC	3 cut(s)	39, 150, 207
FokI	GGATG	1 cut(s)	12
Fsp4HI	GCNGC	3 cut(s)	39, 150, 207
GluI	GCNGC	3 cut(s)	39, 150, 207
HapII	CCGG	1 cut(s)	50
Hin1II	CATG	1 cut(s)	373
HindIII	AAGCTT	1 cut(s)	93
HinfI	GANTC	3 cut(s)	73, 136, 375
HpaII	CCGG	1 cut(s)	50
Hpy188I	TCNGA	2 cut(s)	336, 380
Hpy188III	TCNNGA	1 cut(s)	159
Hpy99I	CGWCG	1 cut(s)	252
HpyAV	CCTTC	3 cut(s)	52, 156, 185
HpyCH4III	ACNGT	1 cut(s)	280
HpyCH4V	TGCA	1 cut(s)	41
HpyF10VI	GCNNNNNNNGC	1 cut(s)	258
HpyF3I	CTNAG	1 cut(s)	157
Hsp92II	CATG	1 cut(s)	373
Ksp22I	TGATCA	1 cut(s)	283
Kzo9I	GATC	2 cut(s)	112, 283
Lsp1109I	GCAGC	3 cut(s)	25, 136, 218
MalI	GATC	2 cut(s)	114, 285
MboI	GATC	2 cut(s)	112, 283
MflI	RGATCY	1 cut(s)	112
MluCI	AATT	4 cut(s)	126, 177, 231, 287
MnlI	CCTC	4 cut(s)	103, 346, 349, 374
MroXI	GAANNNNTTC	1 cut(s)	72
MseI	TTAA	2 cut(s)	90, 234
MslI	CAYNNNNRTG	1 cut(s)	308
MspI	CCGG	1 cut(s)	50
MspR9I	CCNGG	1 cut(s)	83
MvaI	CCWGG	1 cut(s)	83
MwoI	GCNNNNNNNGC	1 cut(s)	258
NdeII	GATC	2 cut(s)	112, 283
NlaIII	CATG	1 cut(s)	373
NlaIV	GGNNCC	2 cut(s)	63, 114
OliI	CACNNNNGTG	1 cut(s)	308
PdmI	GAANNNNTTC	1 cut(s)	72
PfeI	GAWTC	3 cut(s)	73, 136, 375
PfoI	TCCNGGA	1 cut(s)	81
PkrI	GCNGC	3 cut(s)	40, 151, 208
PpuMI	RGGWCCY	1 cut(s)	85
PsiI	TTATAA	2 cut(s)	132, 341
Psp5II	RGGWCCY	1 cut(s)	85
Psp6I	CCWGG	1 cut(s)	81
PspGI	CCWGG	1 cut(s)	81
PspN4I	GGNNCC	2 cut(s)	63, 114
PspPI	GGNCC	2 cut(s)	85, 200
PspPPI	RGGWCCY	1 cut(s)	85
PsuI	RGATCY	1 cut(s)	112
RsaI	GTAC	1 cut(s)	122
RsaNI	GTAC	1 cut(s)	121
RseI	CAYNNNNRTG	1 cut(s)	308
SaqAI	TTAA	2 cut(s)	90, 234
SatI	GCNGC	3 cut(s)	39, 150, 207
Sau3AI	GATC	2 cut(s)	112, 283
Sau96I	GGNCC	2 cut(s)	85, 200
ScrFI	CCNGG	1 cut(s)	83
SetI	ASST	7 cut(s)	67, 90, 97, 122, 310, 360, 385
SinI	GGWCC	2 cut(s)	85, 200
SmiMI	CAYNNNNRTG	1 cut(s)	308
Sse9I	AATT	4 cut(s)	126, 177, 231, 287
StyD4I	CCNGG	1 cut(s)	81
StyI	CCWWGG	1 cut(s)	116
TaaI	ACNGT	1 cut(s)	280
TasI	AATT	4 cut(s)	126, 177, 231, 287
TfiI	GAWTC	3 cut(s)	73, 136, 375
Tru1I	TTAA	2 cut(s)	90, 234
Tru9I	TTAA	2 cut(s)	90, 234
TscAI	CASTG	2 cut(s)	107, 283
TseI	GCWGC	3 cut(s)	38, 149, 206
TspDTI	ATGAA	2 cut(s)	71, 260
TspRI	CASTG	2 cut(s)	107, 283
VpaK11BI	GGWCC	2 cut(s)	85, 200
XapI	RAATTY	1 cut(s)	126
XcmI	CCANNNNNNNNNTGG	1 cut(s)	220
XmnI	GAANNNNTTC	1 cut(s)	72

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.