Basic Information

Type: gene

Biological Identity

Species

prunus_persica

Chromosome

Pp06

Orthogroup ID

OG0006742

Physical Location & Seq

Genomic Coordinates Forward (+)

2235374 .. 2238080

Gene Structure 2707 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

Prupe.6G028700.1

Sequence Viewer

CDS Protein Promoter (2k)

Length: 627 bp

ATGGAAGCTCTCTCATTTCGAAGCTTACTTCAACTCCCATCTACTCTCAGAACTCCAAGTTATGTTGAGAAAGAGCAACCTAAGAACACTGTGGCTAAGAACTTGCATGAAAGACTTCACTCATCAGCACCCAAAAGATTACCAAGAAGGCTGCTTTTGCAGTTTATGGGATTCTCTCCAATCCTTTCACATCCTGTTTTTGCTGCACCAGTGCCAGGGATGAAGGAACCTGAAGTCATTCGGACCTTAAAGCTTCCCAGCGGTGTGAGGATTCAAGAGATTGTTGAAGGGCAAGGATCAGCAGCCAACGAAGGAGATTTGGTTGAAATTAACTATGTATGCAGGCGCACAAATGGATATTTTGTTCATAGCACTGTAGATCAATTCAGTGGAGAAAGCACACCTGTGATACTTCCTTTGGATGAAAAACAGATTATAGCAGGCTTGAAGGAGGTTCTAGTTGGCATGCGGATTGGCGGAAAGAGAAGAGCGTTGATACCTCCTTATGTGGGTTACATAAATGAAAACTTAAAACCAATTCCTGAAGAGTTTGGCCCTAGACGCAGCCTTTTGTCTCATGTAAACGAGCCCTTGATATTTGAGGTGCAGCTCTTGAAAGTGCTATGA

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0005575 GO:0005622 GO:0005623 GO:0005737 GO:0009507 GO:0009536 GO:0043226 GO:0043227 GO:0043229 GO:0043231 GO:0044424 GO:0044444 GO:0044464

KEGG Pathways

Metabolic & Signaling

No pathways identified.

Pfam Domains

Protein Families

FKBP_C

Protein Analysis

209

Amino Acids

23.29

Weight (kDa)

9.41

Isoelectric Point (pI)

52.19

Instability Index

Protein Domains (Pfam)

No Pfam domains detected for this protein.

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

Style Settings

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Align Labels (Cladogram)

Image

Tree File

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Publication-ready

iTOL Interactive Tree Of Life · Most popular EvolView Flexible annotations MEGA Desktop phylogenetics suite FigTree Desktop tree editor

Orthologous Genes (Group: OG0006742)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT4G26555 AT4G26555 AT4G26555
fragaria_vesca	FvH4_3g42230 FvH4_3g42230 FvH4_3g42230 FvH4_3g42230
malus_domestica	MD03G1036700.v1.1
prunus_persica	Prupe.6G028700_v2.0.a1 Prupe.6G028700_v2.0.a1
pyrus_communis	pycom03g02810 pycom11g03110
rosa_chinensis	RchiOBHm_Chr5g0075491 RchiOBHm_Chr5g0075521 RchiOBHm_Chr5g0075531
rosa_laevigata	RLG00000036573
rosa_multiflora	Rmu_co8432907.1_g000001
rosa_roxburghii	Rroxscaffold_1G00006020
rosa_rugosa	Rorug05G0440000 Rorug05G0440000
rosa_samantha	Rh5AG497100 Rh5AG497400 Rh5BG518300 Rh5CG541900 Rh5DG530800
rosa_wichuraiana	Rw5G046110

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AciI	CCGC	3 cut(s)	261, 469, 477
AclWI	GGATC	1 cut(s)	304
AcuI	CTGAAG	2 cut(s)	252, 564
AfiI	CCNNNNNNNGG	2 cut(s)	215, 509
AgsI	TTSAA	6 cut(s)	32, 275, 287, 326, 448, 616
AjnI	CCWGG	1 cut(s)	214
AleI	CACNNNNGTG	1 cut(s)	404
AloI	GAACNNNNNNTCC	2 cut(s)	348, 380
AluBI	AGCT	4 cut(s)	8, 24, 253, 610
AluI	AGCT	4 cut(s)	8, 24, 253, 610
Alw26I	GTCTC	1 cut(s)	579
AlwI	GGATC	1 cut(s)	304
AoxI	GGCC	1 cut(s)	553
ApeKI	GCWGC	5 cut(s)	151, 203, 302, 564, 607
Asp700I	GAANNNNTTC	2 cut(s)	114, 237
AspLEI	GCGC	1 cut(s)	348
AspS9I	GGNCC	2 cut(s)	243, 554
AsuII	TTCGAA	1 cut(s)	19
AvaII	GGWCC	1 cut(s)	243
BanII	GRGCYC	1 cut(s)	591
BbvI	GCAGC	5 cut(s)	138, 190, 314, 576, 619
BccI	CCATC	1 cut(s)	46
BciT130I	CCWGG	1 cut(s)	216
BcoDI	GTCTC	1 cut(s)	579
BfaI	CTAG	2 cut(s)	458, 558
BfmI	CTRYAG	1 cut(s)	375
BisI	GCNGC	5 cut(s)	152, 204, 303, 565, 608
BlsI	GCNGC	5 cut(s)	153, 205, 304, 566, 609
Bme1390I	CCNGG	1 cut(s)	216
Bme18I	GGWCC	1 cut(s)	243
BmgT120I	GGNCC	2 cut(s)	243, 554
BmiI	GGNNCC	1 cut(s)	228
BmrFI	CCNGG	1 cut(s)	216
Bpu14I	TTCGAA	1 cut(s)	19
BsaJI	CCNNGG	1 cut(s)	215
BsaXI	ACNNNNNCTCC	4 cut(s)	18, 48, 306, 336
Bsc4I	CCNNNNNNNGG	2 cut(s)	215, 509
Bse1I	ACTGG	1 cut(s)	209
BseBI	CCWGG	1 cut(s)	216
BseDI	CCNNGG	1 cut(s)	215
BseGI	GGATG	3 cut(s)	190, 225, 427
BseLI	CCNNNNNNNGG	2 cut(s)	215, 509
BseMII	CTCAG	1 cut(s)	61
BseNI	ACTGG	1 cut(s)	209
BseXI	GCAGC	5 cut(s)	138, 190, 314, 576, 619
BseYI	CCCAGC	1 cut(s)	257
BsgI	GTGCAG	2 cut(s)	189, 626
BshFI	GGCC	1 cut(s)	555
BslI	CCNNNNNNNGG	2 cut(s)	215, 509
BsmAI	GTCTC	1 cut(s)	579
BsnI	GGCC	1 cut(s)	555
Bsp119I	TTCGAA	1 cut(s)	19
Bsp1286I	GDGCHC	1 cut(s)	591
Bsp143I	GATC	2 cut(s)	296, 379
BspACI	CCGC	3 cut(s)	261, 469, 477
BspANI	GGCC	1 cut(s)	555
BspCNI	CTCAG	1 cut(s)	60
BspLI	GGNNCC	1 cut(s)	228
BspPI	GGATC	1 cut(s)	304
BspQI	GCTCTTC	1 cut(s)	481
BspT104I	TTCGAA	1 cut(s)	19
BsrI	ACTGG	1 cut(s)	209
BssECI	CCNNGG	1 cut(s)	215
BssMI	GATC	2 cut(s)	296, 379
Bst2UI	CCWGG	1 cut(s)	216
Bst4CI	ACNGT	2 cut(s)	91, 376
Bst6I	CTCTTC	2 cut(s)	481, 540
BstBI	TTCGAA	1 cut(s)	19
BstC8I	GCNNGC	3 cut(s)	344, 442, 467
BstDEI	CTNAG	3 cut(s)	47, 81, 96
BstF5I	GGATG	3 cut(s)	190, 225, 427
BstHHI	GCGC	1 cut(s)	348
BstKTI	GATC	2 cut(s)	299, 382
BstMAI	GTCTC	1 cut(s)	579
BstMBI	GATC	2 cut(s)	296, 379
BstMWI	GCNNNNNNNGC	2 cut(s)	157, 561
BstNI	CCWGG	1 cut(s)	216
BstNSI	RCATGY	1 cut(s)	469
BstSCI	CCNGG	1 cut(s)	214
BstSFI	CTRYAG	1 cut(s)	375
BstV1I	GCAGC	5 cut(s)	138, 190, 314, 576, 619
BsuRI	GGCC	1 cut(s)	555
BtsCI	GGATG	3 cut(s)	190, 225, 427
BtsIMutI	CAGTG	4 cut(s)	87, 216, 372, 394
Cac8I	GCNNGC	3 cut(s)	344, 442, 467
CfoI	GCGC	1 cut(s)	348
Cfr13I	GGNCC	2 cut(s)	243, 554
CseI	GACGC	1 cut(s)	570
CviAII	CATG	3 cut(s)	107, 466, 578
DdeI	CTNAG	3 cut(s)	47, 81, 96
DpnI	GATC	2 cut(s)	298, 381
DpnII	GATC	2 cut(s)	296, 379
Eam1104I	CTCTTC	2 cut(s)	481, 540
EarI	CTCTTC	2 cut(s)	481, 540
EciI	GGCGGA	1 cut(s)	492
Eco24I	GRGCYC	1 cut(s)	591
Eco47I	GGWCC	1 cut(s)	243
Eco57I	CTGAAG	2 cut(s)	252, 564
EcoRII	CCWGG	1 cut(s)	214
EcoT38I	GRGCYC	1 cut(s)	591
FaeI	CATG	3 cut(s)	110, 469, 581
FatI	CATG	3 cut(s)	106, 465, 577
Fnu4HI	GCNGC	5 cut(s)	152, 204, 303, 565, 608
FokI	GGATG	3 cut(s)	177, 232, 434
FriOI	GRGCYC	1 cut(s)	591
Fsp4HI	GCNGC	5 cut(s)	152, 204, 303, 565, 608
FspBI	CTAG	2 cut(s)	458, 558
GlaI	GCGC	1 cut(s)	347
GluI	GCNGC	5 cut(s)	152, 204, 303, 565, 608
GsaI	CCCAGC	1 cut(s)	261
HaeIII	GGCC	1 cut(s)	555
HgaI	GACGC	1 cut(s)	570
HhaI	GCGC	1 cut(s)	348
Hin1II	CATG	3 cut(s)	110, 469, 581
Hin6I	GCGC	1 cut(s)	346
HinP1I	GCGC	1 cut(s)	346
HindIII	AAGCTT	2 cut(s)	22, 251
HinfI	GANTC	2 cut(s)	171, 271
Hpy166II	GTNNAC	1 cut(s)	583
Hpy188I	TCNGA	2 cut(s)	50, 243
Hpy188III	TCNNGA	3 cut(s)	275, 542, 613
Hpy8I	GTNNAC	1 cut(s)	583
HpyAV	CCTTC	5 cut(s)	141, 217, 281, 305, 442
HpyCH4III	ACNGT	2 cut(s)	91, 376
HpyCH4V	TGCA	5 cut(s)	106, 160, 206, 342, 607
HpyF10VI	GCNNNNNNNGC	2 cut(s)	157, 561
HpyF3I	CTNAG	3 cut(s)	47, 81, 96
Hsp92II	CATG	3 cut(s)	110, 469, 581
HspAI	GCGC	1 cut(s)	346
Kzo9I	GATC	2 cut(s)	296, 379
LguI	GCTCTTC	1 cut(s)	481
Lsp1109I	GCAGC	5 cut(s)	138, 190, 314, 576, 619
MaeI	CTAG	2 cut(s)	458, 558
MaeIII	GTNAC	1 cut(s)	512
MalI	GATC	2 cut(s)	298, 381
MboI	GATC	2 cut(s)	296, 379
MboII	GAAGA	2 cut(s)	498, 557
MhlI	GDGCHC	1 cut(s)	591
MluCI	AATT	3 cut(s)	327, 383, 537
MnlI	CCTC	4 cut(s)	261, 445, 510, 595
MroXI	GAANNNNTTC	2 cut(s)	114, 237
MseI	TTAA	3 cut(s)	248, 330, 530
MslI	CAYNNNNRTG	1 cut(s)	404
MspA1I	CMGCKG	1 cut(s)	261
MspR9I	CCNGG	1 cut(s)	216
MvaI	CCWGG	1 cut(s)	216
MwoI	GCNNNNNNNGC	2 cut(s)	157, 561
NdeII	GATC	2 cut(s)	296, 379
NlaIII	CATG	3 cut(s)	110, 469, 581
NlaIV	GGNNCC	1 cut(s)	228
NspI	RCATGY	1 cut(s)	469
NspV	TTCGAA	1 cut(s)	19
OliI	CACNNNNGTG	1 cut(s)	404
PaeI	GCATGC	1 cut(s)	469
PciSI	GCTCTTC	1 cut(s)	481
PdmI	GAANNNNTTC	2 cut(s)	114, 237
PfeI	GAWTC	2 cut(s)	171, 271
PkrI	GCNGC	5 cut(s)	153, 205, 304, 566, 609
Psp6I	CCWGG	1 cut(s)	214
PspFI	CCCAGC	1 cut(s)	257
PspGI	CCWGG	1 cut(s)	214
PspN4I	GGNNCC	1 cut(s)	228
PspPI	GGNCC	2 cut(s)	243, 554
RseI	CAYNNNNRTG	1 cut(s)	404
SapI	GCTCTTC	1 cut(s)	481
SaqAI	TTAA	3 cut(s)	248, 330, 530
SatI	GCNGC	5 cut(s)	152, 204, 303, 565, 608
Sau3AI	GATC	2 cut(s)	296, 379
Sau96I	GGNCC	2 cut(s)	243, 554
ScrFI	CCNGG	1 cut(s)	216
SduI	GDGCHC	1 cut(s)	591
SfcI	CTRYAG	1 cut(s)	375
SfuI	TTCGAA	1 cut(s)	19
SinI	GGWCC	1 cut(s)	243
SmiMI	CAYNNNNRTG	1 cut(s)	404
SphI	GCATGC	1 cut(s)	469
Sse9I	AATT	3 cut(s)	327, 383, 537
SsiI	CCGC	3 cut(s)	261, 469, 477
SspMI	CTAG	2 cut(s)	458, 558
StyD4I	CCNGG	1 cut(s)	214
TaaI	ACNGT	2 cut(s)	91, 376
TaqI	TCGA	1 cut(s)	19
TasI	AATT	3 cut(s)	327, 383, 537
TfiI	GAWTC	2 cut(s)	171, 271
Tru1I	TTAA	3 cut(s)	248, 330, 530
Tru9I	TTAA	3 cut(s)	248, 330, 530
TscAI	CASTG	4 cut(s)	94, 216, 379, 394
TseI	GCWGC	5 cut(s)	151, 203, 302, 564, 607
TspDTI	ATGAA	5 cut(s)	123, 236, 356, 438, 537
TspRI	CASTG	4 cut(s)	94, 216, 379, 394
VpaK11BI	GGWCC	1 cut(s)	243
XceI	RCATGY	1 cut(s)	469
XmnI	GAANNNNTTC	2 cut(s)	114, 237
XspI	CTAG	2 cut(s)	458, 558

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.