Rh5AG497100

Peptidyl-prolyl cis-trans isomerase

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
rosa_samantha
Chr5A
OG0006742
Physical Location & Seq
Reverse (-)
84409937 .. 84412697
2761 bp
Loading structure...
UTR
Exon/CDS
Intron
Rh5AG497100.1

Sequence Viewer

Length: 435 bp
ATGGCACAGGAATGGTTCTCCGGCGGCAGCACCGGCGCCGGCGGCGACTCTCAGAAGCCGGCGTCTTCTCTCTTAGCCGATTGGAACTCCTACGCCGCTTCCCAATCCGCAGAGGACAGCTCCTCTTCGGCCCTCGGCTTCGATCTCCGCGAACGACACCGTTTCGGGCACTTTCAGCGTCCTGTTGATCAATTCAATGGAGAAAGCACACCTGTGATACTTCCTTTGGACGAAAATCAGATTATAAAAGGCTTGGAGGAGGTTCTGGTTGGCATGAGAATTGGAGGAAAAAGGAGAGCATTGATACCTCCTTCTGTGGGATACACAAATGAAAGCTTACAACCAATTCCTGAAGAGTTTGGCCCTCGACGCAGCCTCTTGTCTCATGTAAATGAGCCTTTGATATTCGAGGTGCAGCTTTTGAAACTACTATGA
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
GO:0005575 GO:0005622 GO:0005623 GO:0005737 GO:0009507 GO:0009536 GO:0043226 GO:0043227 GO:0043229 GO:0043231 GO:0044424 GO:0044444 GO:0044464
KEGG Pathways
Metabolic & Signaling
No pathways identified.
Pfam Domains
Protein Families
FKBP_C

Protein Analysis

144

Amino Acids

15.78

Weight (kDa)

5.16

Isoelectric Point (pI)

57.63

Instability Index
Protein Domains (Pfam)
Domain Name Pfam ID Position E-value Description
FKBP_C PF00254 64 - 141 3.1e-13 FKBP-type peptidyl-prolyl cis-trans isomerase
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
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Publication-ready
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Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AanI TTATAA 1 cut(s) 245
AccB1I GGYRCC 1 cut(s) 35
AccII CGCG 1 cut(s) 150
AciI CCGC 5 cut(s) 24, 42, 96, 108, 148
AcuI CTGAAG 1 cut(s) 372
AcyI GRCGYC 2 cut(s) 36, 62
AfiI CCNNNNNNNGG 1 cut(s) 317
AgsI TTSAA 2 cut(s) 196, 424
AleI CACNNNNGTG 1 cut(s) 212
AluBI AGCT 3 cut(s) 120, 336, 418
AluI AGCT 3 cut(s) 120, 336, 418
Alw26I GTCTC 1 cut(s) 387
AoxI GGCC 2 cut(s) 129, 361
ApeKI GCWGC 3 cut(s) 27, 372, 415
AspLEI GCGC 1 cut(s) 38
AspS9I GGNCC 2 cut(s) 130, 362
BaeGI GKGCMC 1 cut(s) 171
BanI GGYRCC 1 cut(s) 35
BbsI GAAGAC 1 cut(s) 57
BbvI GCAGC 3 cut(s) 39, 384, 427
BciVI GTATCC 1 cut(s) 314
BclI TGATCA 1 cut(s) 187
BcoDI GTCTC 1 cut(s) 387
BfoI RGCGCY 1 cut(s) 39
BfuI GTATCC 1 cut(s) 314
BisI GCNGC 6 cut(s) 25, 28, 43, 96, 373, 416
BlsI GCNGC 6 cut(s) 26, 29, 44, 97, 374, 417
BmgT120I GGNCC 2 cut(s) 130, 362
BmiI GGNNCC 1 cut(s) 37
BpiI GAAGAC 1 cut(s) 57
BplI GAGNNNNNCTC 2 cut(s) 104, 136
BsaHI GRCGYC 2 cut(s) 36, 62
BsaJI CCNNGG 1 cut(s) 133
Bsc4I CCNNNNNNNGG 1 cut(s) 317
Bse118I RCCGGY 3 cut(s) 32, 38, 58
BseDI CCNNGG 1 cut(s) 133
BseLI CCNNNNNNNGG 1 cut(s) 317
BseMII CTCAG 1 cut(s) 65
BseRI GAGGAG 2 cut(s) 112, 272
BseSI GKGCMC 1 cut(s) 171
BseXI GCAGC 3 cut(s) 39, 384, 427
BsgI GTGCAG 1 cut(s) 434
Bsh1236I CGCG 1 cut(s) 150
BshFI GGCC 2 cut(s) 131, 363
BshNI GGYRCC 1 cut(s) 35
BsiSI CCGG 4 cut(s) 21, 33, 39, 59
BslI CCNNNNNNNGG 1 cut(s) 317
BsmAI GTCTC 1 cut(s) 387
BsnI GGCC 2 cut(s) 131, 363
Bsp1286I GDGCHC 1 cut(s) 171
Bsp143I GATC 2 cut(s) 142, 187
BspACI CCGC 5 cut(s) 24, 42, 96, 108, 148
BspANI GGCC 2 cut(s) 131, 363
BspCNI CTCAG 1 cut(s) 64
BspFNI CGCG 1 cut(s) 150
BspLI GGNNCC 1 cut(s) 37
BspT107I GGYRCC 1 cut(s) 35
BsrFI RCCGGY 3 cut(s) 32, 38, 58
BssAI RCCGGY 3 cut(s) 32, 38, 58
BssECI CCNNGG 1 cut(s) 133
BssMI GATC 2 cut(s) 142, 187
BssNI GRCGYC 2 cut(s) 36, 62
Bst4CI ACNGT 1 cut(s) 161
Bst6I CTCTTC 2 cut(s) 130, 348
BstACI GRCGYC 2 cut(s) 36, 62
BstC8I GCNNGC 2 cut(s) 40, 60
BstDEI CTNAG 2 cut(s) 51, 73
BstFNI CGCG 1 cut(s) 150
BstH2I RGCGCY 1 cut(s) 39
BstHHI GCGC 1 cut(s) 38
BstKTI GATC 2 cut(s) 145, 190
BstMAI GTCTC 1 cut(s) 387
BstMBI GATC 2 cut(s) 142, 187
BstMWI GCNNNNNNNGC 4 cut(s) 33, 42, 175, 369
BstSLI GKGCMC 1 cut(s) 171
BstUI CGCG 1 cut(s) 150
BstV1I GCAGC 3 cut(s) 39, 384, 427
BstV2I GAAGAC 1 cut(s) 57
BsuI GTATCC 1 cut(s) 314
BsuRI GGCC 2 cut(s) 131, 363
Cac8I GCNNGC 2 cut(s) 40, 60
CfoI GCGC 1 cut(s) 38
Cfr10I RCCGGY 3 cut(s) 32, 38, 58
Cfr13I GGNCC 2 cut(s) 130, 362
CseI GACGC 3 cut(s) 51, 167, 378
CviAII CATG 2 cut(s) 274, 386
DdeI CTNAG 2 cut(s) 51, 73
DinI GGCGCC 1 cut(s) 37
DpnI GATC 2 cut(s) 144, 189
DpnII GATC 2 cut(s) 142, 187
Eam1104I CTCTTC 2 cut(s) 130, 348
EarI CTCTTC 2 cut(s) 130, 348
Eco57I CTGAAG 1 cut(s) 372
EgeI GGCGCC 1 cut(s) 37
EheI GGCGCC 1 cut(s) 37
FaeI CATG 2 cut(s) 277, 389
FaiI YATR 4 cut(s) 245, 275, 387, 433
FatI CATG 2 cut(s) 273, 385
FbaI TGATCA 1 cut(s) 187
Fnu4HI GCNGC 6 cut(s) 25, 28, 43, 96, 373, 416
Fsp4HI GCNGC 6 cut(s) 25, 28, 43, 96, 373, 416
GlaI GCGC 1 cut(s) 37
GluI GCNGC 6 cut(s) 25, 28, 43, 96, 373, 416
HaeII RGCGCY 1 cut(s) 39
HaeIII GGCC 2 cut(s) 131, 363
HapII CCGG 4 cut(s) 21, 33, 39, 59
HgaI GACGC 3 cut(s) 51, 167, 378
HhaI GCGC 1 cut(s) 38
Hin1I GRCGYC 2 cut(s) 36, 62
Hin1II CATG 2 cut(s) 277, 389
Hin6I GCGC 1 cut(s) 36
HinP1I GCGC 1 cut(s) 36
HindIII AAGCTT 1 cut(s) 334
HinfI GANTC 1 cut(s) 47
HpaII CCGG 4 cut(s) 21, 33, 39, 59
Hpy188I TCNGA 2 cut(s) 54, 240
Hpy188III TCNNGA 1 cut(s) 350
Hpy99I CGWCG 1 cut(s) 372
HpyAV CCTTC 1 cut(s) 321
HpyCH4III ACNGT 1 cut(s) 161
HpyCH4V TGCA 1 cut(s) 415
HpyF10VI GCNNNNNNNGC 4 cut(s) 33, 42, 175, 369
HpyF3I CTNAG 2 cut(s) 51, 73
Hsp92I GRCGYC 2 cut(s) 36, 62
Hsp92II CATG 2 cut(s) 277, 389
HspAI GCGC 1 cut(s) 36
KasI GGCGCC 1 cut(s) 35
KroI GCCGGC 2 cut(s) 38, 58
KroNI GCCGGC 2 cut(s) 40, 60
Ksp22I TGATCA 1 cut(s) 187
Kzo9I GATC 2 cut(s) 142, 187
LmnI GCTCC 1 cut(s) 125
LpnPI CCDG 8 cut(s) 34, 46, 52, 72, 195, 225, 251, 363
Lsp1109I GCAGC 3 cut(s) 39, 384, 427
MalI GATC 2 cut(s) 144, 189
MboI GATC 2 cut(s) 142, 187
MboII GAAGA 3 cut(s) 57, 117, 365
MhlI GDGCHC 1 cut(s) 171
MluCI AATT 3 cut(s) 191, 279, 345
Mly113I GGCGCC 1 cut(s) 36
MlyI GAGTC 1 cut(s) 41
MreI CGCCGGCG 1 cut(s) 38
MroNI GCCGGC 2 cut(s) 38, 58
MslI CAYNNNNRTG 3 cut(s) 10, 212, 390
MspI CCGG 4 cut(s) 21, 33, 39, 59
MvnI CGCG 1 cut(s) 150
MwoI GCNNNNNNNGC 4 cut(s) 33, 42, 175, 369
NaeI GCCGGC 2 cut(s) 40, 60
NarI GGCGCC 1 cut(s) 36
NdeII GATC 2 cut(s) 142, 187
NgoMIV GCCGGC 2 cut(s) 38, 58
NlaIII CATG 2 cut(s) 277, 389
NlaIV GGNNCC 1 cut(s) 37
NmeAIII GCCGAG 1 cut(s) 114
OliI CACNNNNGTG 1 cut(s) 212
PcsI WCGNNNNNNNCGW 1 cut(s) 147
PdiI GCCGGC 2 cut(s) 40, 60
PkrI GCNGC 6 cut(s) 26, 29, 44, 97, 374, 417
PleI GAGTC 1 cut(s) 41
PluTI GGCGCC 1 cut(s) 39
PpsI GAGTC 1 cut(s) 41
PsiI TTATAA 1 cut(s) 245
PspN4I GGNNCC 1 cut(s) 37
PspPI GGNCC 2 cut(s) 130, 362
RseI CAYNNNNRTG 3 cut(s) 10, 212, 390
SatI GCNGC 6 cut(s) 25, 28, 43, 96, 373, 416
Sau3AI GATC 2 cut(s) 142, 187
Sau96I GGNCC 2 cut(s) 130, 362
SchI GAGTC 1 cut(s) 41
SduI GDGCHC 1 cut(s) 171
SetI ASST 7 cut(s) 122, 214, 264, 310, 338, 414, 420
SfoI GGCGCC 1 cut(s) 37
SgrAI CRCCGGYG 2 cut(s) 32, 38
SmiMI CAYNNNNRTG 3 cut(s) 10, 212, 390
Sse9I AATT 3 cut(s) 191, 279, 345
SsiI CCGC 5 cut(s) 24, 42, 96, 108, 148
SspDI GGCGCC 1 cut(s) 35
TaaI ACNGT 1 cut(s) 161
TaqI TCGA 3 cut(s) 141, 367, 408
TasI AATT 3 cut(s) 191, 279, 345
TauI GCSGC 3 cut(s) 27, 45, 98
TseI GCWGC 3 cut(s) 27, 372, 415
TspDTI ATGAA 1 cut(s) 345
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.