AT4G26620

Sucrase/ferredoxin-like

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
arabidopsis_thaliana
4
OG0007599
Physical Location & Seq
Reverse (-)
13427029 .. 13430049
3021 bp
Loading structure...
UTR
Exon/CDS
Intron
AT4G26620.1

Sequence Viewer

Length: 1332 bp
ATGGGAAGTGGAAGAGATAGAGACGACCCTTTATCCTTCACCAGCAATCCATCTACGGCGTCGTCTCCAGTCACTGTATCTGACTATCTCGACAACTTTCTCGGCGAACCCACTTCTCGCTCCGGTAGTTTTCAAAGCGAGAGCTTACTCGGTGGAGGCGGTGGAGAAAGCATCAACGACGCTGATTTTGGATTCGCTCGTCCTGATTTCCGATCGGAACAACTAGCTGGAACCGTACAGTTTTACGAGAGGCATGTCTTCTTGTGCTACAAAAAGCCATCTGTTTGGCCCGCAAGGATCGAGGCTGCTGAGTTCGATCGATTGCCTAGGCTACTCTCTGCTGCTGTATCGGCCAGAAAGGGTAGCATGAAGAAGGAGACTCGACTCACAATATGTGAGGGGCATGATGGAACAGAGACATCCAATGGTGATGTACTTATTTTTCCTGATATGATCAGATACAGGAGATTGACTCACTTTGATGTGGAGACCTTTGTGGAAGAGGTGCTTGTGAAGGATGGTGAATGGCTGCCTGGAAATCCTGAATTGCTGAAAGGCTCATATGTCTTTGTATGTTCCCATGGATCCCGAGACCGGCGATGTGGGGTTTGTGGGCCGTCGCTAGTTAGTAGATTCAGAGAAGAACTTGAGTTCCATGGTCTTCAAGGTAAAGTGTCAATTAGCCCATGTTCTCACATAGGTGGTCACAAATACGCTGGGAATGTTATCATCTACCGATCAAACATCAACAGGGAAGTCACAGGACACTGGTATGGGTATGTGACCCCAGAAGATGTACCTATTCTTTTGGAGCAGCACATCAACAAAGGCGAGATTGTAGACCGGCTATGGAGGGGTGAAATGGGTCTATCAGAAGAAGATCAGAAGAAAACTCAAGAAGGGCGATTTCAGCTAAATGGTACAGTCCATTCCGTAAAGATCAATGGGAAAGTGAGTCAAGAATCATCGGTTCACAACGCCGATGTTTCCTGTTGCCAGTCACGAGCTGCAGAACCTAATGGTTGTTGCCAACAAAATGGGAACAGCTCTTCATGTTGTCAAGACGACACTACTCTGATGTTGTCACTGGGAACATCAGAAGATAATCAACTTGAAAGTGAAAACAACACTGAGAAGCTGACACCAGGAAGAAAAATTGCAGAAAAGACTTTCTTTAGAATTAATAGTGACAAAGGATCTTCGACACGTAAGGTTTGCGGAATACCAACATGGTTAGAGAGCTGGGAGCGAGAAGATACTTATGCTGCTCTTGCTGTTGTCTGTGCTGCTGCTTCCGTGGCTGTTGCCTATACTTGCTACAAACAGTTGTAA
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
No ontology terms assigned.
KEGG Pathways
Metabolic & Signaling
No pathways identified.
Pfam Domains
Protein Families
Suc_Fer-like

Protein Analysis

443

Amino Acids

48.98

Weight (kDa)

5.58

Isoelectric Point (pI)

40.46

Instability Index
Protein Domains (Pfam)
Domain Name Pfam ID Position E-value Description
Suc_Fer-like PF06999 75 - 286 2.1e-48 Sucrase/ferredoxin-like
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
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Publication-ready
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Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AccI GTMKAC 1 cut(s) 840
AciI CCGC 3 cut(s) 159, 291, 1218
AclWI GGATC 4 cut(s) 305, 579, 592, 1204
AcoI YGGCCR 1 cut(s) 351
AcyI GRCGYC 1 cut(s) 59
AfaI GTAC 4 cut(s) 237, 435, 798, 922
AfiI CCNNNNNNNGG 1 cut(s) 594
AflIII ACRYGT 1 cut(s) 1205
AgsI TTSAA 3 cut(s) 134, 665, 1115
AjnI CCWGG 2 cut(s) 532, 1144
AleI CACNNNNGTG 1 cut(s) 699
AloI GAACNNNNNNTCC 2 cut(s) 636, 668
AluBI AGCT 7 cut(s) 144, 227, 913, 1007, 1047, 1138, 1242
AluI AGCT 7 cut(s) 144, 227, 913, 1007, 1047, 1138, 1242
Alw26I GTCTC 6 cut(s) 15, 69, 371, 410, 482, 585
AlwI GGATC 4 cut(s) 305, 579, 592, 1204
AlwNI CAGNNNCTG 1 cut(s) 74
Ama87I CYCGRG 1 cut(s) 588
AoxI GGCC 3 cut(s) 287, 351, 614
ApeKI GCWGC 8 cut(s) 305, 341, 529, 814, 1007, 1265, 1286, 1289
ArsI GACNNNNNNTTYG 2 cut(s) 170, 202
AseI ATTAAT 1 cut(s) 1182
AspA2I CCTAGG 1 cut(s) 326
AspS9I GGNCC 2 cut(s) 288, 614
AsuHPI GGTGA 4 cut(s) 31, 440, 533, 869
AvaI CYCGRG 1 cut(s) 588
AvrII CCTAGG 1 cut(s) 326
BamHI GGATCC 1 cut(s) 584
BauI CACGAG 1 cut(s) 1002
BbsI GAAGAC 2 cut(s) 250, 653
BbvI GCAGC 8 cut(s) 292, 328, 516, 826, 994, 1252, 1273, 1276
BccI CCATC 4 cut(s) 58, 286, 401, 512
BceAI ACGGC 2 cut(s) 72, 601
BciT130I CCWGG 2 cut(s) 534, 1146
BclI TGATCA 1 cut(s) 453
BcoDI GTCTC 6 cut(s) 15, 69, 371, 410, 482, 585
BfaI CTAG 3 cut(s) 224, 327, 623
BfmI CTRYAG 1 cut(s) 1008
BisI GCNGC 8 cut(s) 306, 342, 530, 815, 1008, 1266, 1287, 1290
BlnI CCTAGG 1 cut(s) 326
BlsI GCNGC 8 cut(s) 307, 343, 531, 816, 1009, 1267, 1288, 1291
Bme1390I CCNGG 2 cut(s) 534, 1146
BmeT110I CYCGRG 1 cut(s) 588
BmgT120I GGNCC 2 cut(s) 288, 614
BmiI GGNNCC 2 cut(s) 232, 586
BmrFI CCNGG 2 cut(s) 534, 1146
BmrI ACTGGG 1 cut(s) 1097
BmsI GCATC 1 cut(s) 180
BmuI ACTGGG 1 cut(s) 1097
BpiI GAAGAC 2 cut(s) 250, 653
BplI GAGNNNNNCTC 2 cut(s) 457, 489
BpmI CTGGAG 1 cut(s) 51
BpuEI CTTGAG 2 cut(s) 668, 879
Bsa29I ATCGAT 1 cut(s) 319
BsaAI YACGTR 1 cut(s) 1208
BsaHI GRCGYC 1 cut(s) 59
BsaI GGTCTC 2 cut(s) 482, 585
BsaJI CCNNGG 4 cut(s) 326, 580, 655, 1296
BsaWI WCCGGW 1 cut(s) 122
Bsc4I CCNNNNNNNGG 1 cut(s) 594
Bse118I RCCGGY 2 cut(s) 594, 843
Bse1I ACTGG 4 cut(s) 68, 773, 997, 1092
BseBI CCWGG 2 cut(s) 534, 1146
BseCI ATCGAT 1 cut(s) 319
BseDI CCNNGG 4 cut(s) 326, 580, 655, 1296
BseGI GGATG 2 cut(s) 419, 523
BseLI CCNNNNNNNGG 1 cut(s) 594
BseMII CTCAG 2 cut(s) 300, 1122
BseNI ACTGG 4 cut(s) 68, 773, 997, 1092
BseXI GCAGC 8 cut(s) 292, 328, 516, 826, 994, 1252, 1273, 1276
BseYI CCCAGC 2 cut(s) 716, 1242
Bsh1285I CGRYCG 2 cut(s) 215, 319
BshFI GGCC 3 cut(s) 289, 353, 616
BshVI ATCGAT 1 cut(s) 319
BsiEI CGRYCG 2 cut(s) 215, 319
BsiHKCI CYCGRG 1 cut(s) 588
BsiSI CCGG 3 cut(s) 123, 595, 844
BslI CCNNNNNNNGG 1 cut(s) 594
BsmAI GTCTC 6 cut(s) 15, 69, 371, 410, 482, 585
BsmBI CGTCTC 2 cut(s) 15, 69
BsnI GGCC 3 cut(s) 289, 353, 616
Bso31I GGTCTC 2 cut(s) 482, 585
BsoBI CYCGRG 1 cut(s) 588
Bsp143I GATC 9 cut(s) 212, 297, 316, 453, 584, 737, 880, 939, 1196
Bsp19I CCATGG 2 cut(s) 580, 655
BspACI CCGC 3 cut(s) 159, 291, 1218
BspANI GGCC 3 cut(s) 289, 353, 616
BspCNI CTCAG 2 cut(s) 301, 1123
BspDI ATCGAT 1 cut(s) 319
BspLI GGNNCC 2 cut(s) 232, 586
BspMAI CTGCAG 1 cut(s) 1012
BspPI GGATC 4 cut(s) 305, 579, 592, 1204
BspQI GCTCTTC 1 cut(s) 1054
BspTNI GGTCTC 2 cut(s) 482, 585
BsrFI RCCGGY 2 cut(s) 594, 843
BsrI ACTGG 4 cut(s) 68, 773, 997, 1092
BssAI RCCGGY 2 cut(s) 594, 843
BssECI CCNNGG 4 cut(s) 326, 580, 655, 1296
BssMI GATC 9 cut(s) 212, 297, 316, 453, 584, 737, 880, 939, 1196
BssNI GRCGYC 1 cut(s) 59
BssSI CACGAG 1 cut(s) 1002
BssT1I CCWWGG 3 cut(s) 326, 580, 655
Bst2BI CACGAG 1 cut(s) 1002
Bst2UI CCWGG 2 cut(s) 534, 1146
Bst4CI ACNGT 5 cut(s) 76, 235, 240, 925, 1326
Bst6I CTCTTC 3 cut(s) 7, 495, 1054
BstACI GRCGYC 1 cut(s) 59
BstBAI YACGTR 1 cut(s) 1208
BstC8I GCNNGC 1 cut(s) 291
BstDEI CTNAG 2 cut(s) 309, 1131
BstDSI CCRYGG 3 cut(s) 580, 655, 1296
BstF5I GGATG 2 cut(s) 419, 523
BstKTI GATC 9 cut(s) 215, 300, 319, 456, 587, 740, 883, 942, 1199
BstMAI GTCTC 6 cut(s) 15, 69, 371, 410, 482, 585
BstMBI GATC 9 cut(s) 212, 297, 316, 453, 584, 737, 880, 939, 1196
BstMCI CGRYCG 2 cut(s) 215, 319
BstMWI GCNNNNNNNGC 4 cut(s) 350, 910, 1271, 1298
BstNI CCWGG 2 cut(s) 534, 1146
BstNSI RCATGY 1 cut(s) 257
BstSCI CCNGG 2 cut(s) 532, 1144
BstSFI CTRYAG 1 cut(s) 1008
BstV1I GCAGC 8 cut(s) 292, 328, 516, 826, 994, 1252, 1273, 1276
BstV2I GAAGAC 2 cut(s) 250, 653
BstX2I RGATCY 2 cut(s) 584, 1196
BstXI CCANNNNNNTGG 2 cut(s) 285, 1037
BstYI RGATCY 2 cut(s) 584, 1196
Bsu15I ATCGAT 1 cut(s) 319
BsuRI GGCC 3 cut(s) 289, 353, 616
BsuTUI ATCGAT 1 cut(s) 319
BtgI CCRYGG 3 cut(s) 580, 655, 1296
BtgZI GCGATG 1 cut(s) 613
BtsCI GGATG 2 cut(s) 419, 523
BtsIMutI CAGTG 4 cut(s) 72, 766, 1085, 1128
Cac8I GCNNGC 1 cut(s) 291
CaiI CAGNNNCTG 1 cut(s) 74
Cfr10I RCCGGY 2 cut(s) 594, 843
Cfr13I GGNCC 2 cut(s) 288, 614
ClaI ATCGAT 1 cut(s) 319
CseI GACGC 2 cut(s) 48, 188
Csp6I GTAC 4 cut(s) 236, 434, 797, 921
CviAII CATG 8 cut(s) 254, 367, 404, 581, 656, 687, 1053, 1230
CviQI GTAC 4 cut(s) 236, 434, 797, 921
DdeI CTNAG 2 cut(s) 309, 1131
DpnI GATC 9 cut(s) 214, 299, 318, 455, 586, 739, 882, 941, 1198
DpnII GATC 9 cut(s) 212, 297, 316, 453, 584, 737, 880, 939, 1196
EaeI YGGCCR 1 cut(s) 351
Eam1104I CTCTTC 3 cut(s) 7, 495, 1054
EarI CTCTTC 3 cut(s) 7, 495, 1054
Eco130I CCWWGG 3 cut(s) 326, 580, 655
Eco31I GGTCTC 2 cut(s) 482, 585
Eco88I CYCGRG 1 cut(s) 588
EcoRII CCWGG 2 cut(s) 532, 1144
EcoT14I CCWWGG 3 cut(s) 326, 580, 655
ErhI CCWWGG 3 cut(s) 326, 580, 655
Esp3I CGTCTC 2 cut(s) 15, 69
FaeI CATG 8 cut(s) 257, 370, 407, 584, 659, 690, 1056, 1233
FalI AAGNNNNNCTT 4 cut(s) 492, 524, 1157, 1189
FatI CATG 8 cut(s) 253, 366, 403, 580, 655, 686, 1052, 1229
FauI CCCGC 1 cut(s) 298
FauNDI CATATG 1 cut(s) 562
FbaI TGATCA 1 cut(s) 453
FblI GTMKAC 1 cut(s) 840
Fnu4HI GCNGC 8 cut(s) 306, 342, 530, 815, 1008, 1266, 1287, 1290
FokI GGATG 2 cut(s) 406, 530
Fsp4HI GCNGC 8 cut(s) 306, 342, 530, 815, 1008, 1266, 1287, 1290
FspBI CTAG 3 cut(s) 224, 327, 623
GluI GCNGC 8 cut(s) 306, 342, 530, 815, 1008, 1266, 1287, 1290
GsaI CCCAGC 2 cut(s) 720, 1246
GsuI CTGGAG 1 cut(s) 51
HaeIII GGCC 3 cut(s) 289, 353, 616
HapII CCGG 3 cut(s) 123, 595, 844
HgaI GACGC 2 cut(s) 48, 188
Hin1I GRCGYC 1 cut(s) 59
Hin1II CATG 8 cut(s) 257, 370, 407, 584, 659, 690, 1056, 1233
HinfI GANTC 7 cut(s) 192, 379, 384, 472, 633, 955, 962
HpaII CCGG 3 cut(s) 123, 595, 844
HphI GGTGA 4 cut(s) 31, 440, 533, 869
Hpy166II GTNNAC 2 cut(s) 841, 973
Hpy188I TCNGA 9 cut(s) 82, 212, 217, 458, 638, 874, 885, 1077, 1099
Hpy188III TCNNGA 9 cut(s) 89, 203, 446, 542, 588, 896, 959, 1002, 1061
Hpy8I GTNNAC 2 cut(s) 841, 973
Hpy99I CGWCG 3 cut(s) 64, 182, 622
HpyAV CCTTC 4 cut(s) 46, 367, 508, 893
HpyCH4III ACNGT 5 cut(s) 76, 235, 240, 925, 1326
HpyCH4IV ACGT 1 cut(s) 1207
HpyCH4V TGCA 2 cut(s) 1010, 1160
HpyF10VI GCNNNNNNNGC 4 cut(s) 350, 910, 1271, 1298
HpyF3I CTNAG 2 cut(s) 309, 1131
HpySE526I ACGT 1 cut(s) 1207
Hsp92I GRCGYC 1 cut(s) 59
Hsp92II CATG 8 cut(s) 257, 370, 407, 584, 659, 690, 1056, 1233
Ksp22I TGATCA 1 cut(s) 453
Kzo9I GATC 9 cut(s) 212, 297, 316, 453, 584, 737, 880, 939, 1196
LguI GCTCTTC 1 cut(s) 1054
LmnI GCTCC 3 cut(s) 125, 811, 1246
Lsp1109I GCAGC 8 cut(s) 292, 328, 516, 826, 994, 1252, 1273, 1276
LweI GCATC 1 cut(s) 180
MaeI CTAG 3 cut(s) 224, 327, 623
MaeII ACGT 1 cut(s) 1207
MaeIII GTNAC 7 cut(s) 70, 704, 757, 781, 999, 1083, 1187
MalI GATC 9 cut(s) 214, 299, 318, 455, 586, 739, 882, 941, 1198
MboI GATC 9 cut(s) 212, 297, 316, 453, 584, 737, 880, 939, 1196
MflI RGATCY 2 cut(s) 584, 1196
MluCI AATT 4 cut(s) 545, 678, 1155, 1179
MlyI GAGTC 4 cut(s) 373, 378, 466, 964
MnlI CCTC 6 cut(s) 149, 243, 295, 391, 496, 846
MseI TTAA 1 cut(s) 1182
MslI CAYNNNNRTG 3 cut(s) 480, 699, 771
MspI CCGG 3 cut(s) 123, 595, 844
MspR9I CCNGG 2 cut(s) 534, 1146
MvaI CCWGG 2 cut(s) 534, 1146
MwoI GCNNNNNNNGC 4 cut(s) 350, 910, 1271, 1298
NcoI CCATGG 2 cut(s) 580, 655
NdeI CATATG 1 cut(s) 562
NdeII GATC 9 cut(s) 212, 297, 316, 453, 584, 737, 880, 939, 1196
NlaIII CATG 8 cut(s) 257, 370, 407, 584, 659, 690, 1056, 1233
NlaIV GGNNCC 2 cut(s) 232, 586
NmeAIII GCCGAG 1 cut(s) 81
NmuCI GTSAC 7 cut(s) 70, 704, 757, 781, 999, 1083, 1187
NspI RCATGY 1 cut(s) 257
OliI CACNNNNGTG 1 cut(s) 699
PciSI GCTCTTC 1 cut(s) 1054
PfeI GAWTC 3 cut(s) 192, 633, 962
PkrI GCNGC 8 cut(s) 307, 343, 531, 816, 1009, 1267, 1288, 1291
Ple19I CGATCG 2 cut(s) 215, 319
PleI GAGTC 4 cut(s) 373, 378, 466, 963
PpsI GAGTC 4 cut(s) 373, 378, 466, 963
Ppu21I YACGTR 1 cut(s) 1208
PshBI ATTAAT 1 cut(s) 1182
Psp6I CCWGG 2 cut(s) 532, 1144
PspFI CCCAGC 2 cut(s) 716, 1242
PspGI CCWGG 2 cut(s) 532, 1144
PspN4I GGNNCC 2 cut(s) 232, 586
PspPI GGNCC 2 cut(s) 288, 614
PstI CTGCAG 1 cut(s) 1012
PstNI CAGNNNCTG 1 cut(s) 74
PsuI RGATCY 2 cut(s) 584, 1196
PvuI CGATCG 2 cut(s) 215, 319
RsaI GTAC 4 cut(s) 237, 435, 798, 922
RsaNI GTAC 4 cut(s) 236, 434, 797, 921
RseI CAYNNNNRTG 3 cut(s) 480, 699, 771
SapI GCTCTTC 1 cut(s) 1054
SaqAI TTAA 1 cut(s) 1182
SatI GCNGC 8 cut(s) 306, 342, 530, 815, 1008, 1266, 1287, 1290
Sau3AI GATC 9 cut(s) 212, 297, 316, 453, 584, 737, 880, 939, 1196
Sau96I GGNCC 2 cut(s) 288, 614
SchI GAGTC 4 cut(s) 373, 378, 466, 964
ScrFI CCNGG 2 cut(s) 534, 1146
SfaNI GCATC 1 cut(s) 180
SfcI CTRYAG 1 cut(s) 1008
SmiMI CAYNNNNRTG 3 cut(s) 480, 699, 771
SmlI CTYRAG 2 cut(s) 647, 894
SmoI CTYRAG 2 cut(s) 647, 894
Sse9I AATT 4 cut(s) 545, 678, 1155, 1179
SsiI CCGC 3 cut(s) 159, 291, 1218
SspMI CTAG 3 cut(s) 224, 327, 623
StyD4I CCNGG 2 cut(s) 532, 1144
StyI CCWWGG 3 cut(s) 326, 580, 655
TaaI ACNGT 5 cut(s) 76, 235, 240, 925, 1326
TaiI ACGT 1 cut(s) 1210
TaqI TCGA 6 cut(s) 90, 300, 315, 319, 382, 1202
TasI AATT 4 cut(s) 545, 678, 1155, 1179
TatI WGTACW 1 cut(s) 433
TfiI GAWTC 3 cut(s) 192, 633, 962
Tru1I TTAA 1 cut(s) 1182
Tru9I TTAA 1 cut(s) 1182
TscAI CASTG 4 cut(s) 79, 773, 1092, 1135
TseFI GTSAC 7 cut(s) 70, 704, 757, 781, 999, 1083, 1187
TseI GCWGC 8 cut(s) 305, 341, 529, 814, 1007, 1265, 1286, 1289
Tsp45I GTSAC 7 cut(s) 70, 704, 757, 781, 999, 1083, 1187
TspDTI ATGAA 2 cut(s) 383, 1041
TspGWI ACGGA 2 cut(s) 922, 1285
TspRI CASTG 4 cut(s) 79, 773, 1092, 1135
VspI ATTAAT 1 cut(s) 1182
XceI RCATGY 1 cut(s) 257
XmaJI CCTAGG 1 cut(s) 326
XmiI GTMKAC 1 cut(s) 840
XspI CTAG 3 cut(s) 224, 327, 623
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.