Basic Information

Type: gene

Biological Identity

Species

rosa_multiflora

Chromosome

Rmu_ssc0000184.1

Orthogroup ID

OG0007599

Physical Location & Seq

Genomic Coordinates Forward (+)

156425 .. 159398

Gene Structure 2974 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

Rmu_ssc0000184.1_g000039.1.cds

Sequence Viewer

CDS Protein Promoter (2k)

Length: 903 bp

atggctagcgcccgagaccgagacgactccttgctcccatttacgacgcccccatccacgtcgtcttccccgattgtgatatccgacccgctcgacgggttcctctccgacccgaattcccacatcgggaccagcgcctccgggagcttccagaacgagggtttgttggcagatactagcgcgagcggcagcgacgccgagtttgggttttcgaggggcgagttccggacgagtcaactcgccggcacggtggagttttatcagaggcatgtgtttttgtgctacaagaacccgcaggtgtggccgccgaggattgaggcggcggagtttgatcggctgccgaggctgctccacgcggccgtgatggcgaggagggtggatatgaggaaacagactcgcttaacaatatgtgaagggcacgatggaactgagacttcaaatggtgatgtattaattttccccgacatgatcagatacagggatcgccgttgtggagtctgtgggcctcccttgatcaatagattcagagaagagatagatttgcatggtctacaaggtaaagtgtctgttaggccatgttcacacattggggggcataagtatgcaggaaatgtaattatatttggatcaaatatcaacaaagaagtcactggccactggtatggatatgttgctccagaagatgtacctcaattgcttgagcagcatattgggagaggagaaattgtagactggctatggaggggtcaaatgggtttatcagaagaacaacagaagaaatctcaagaactaaggctccagcccaatggcgagtcaaatgtggagaaaagaaatctcaagttgaaattgggggctgttgccaggaaaacggaagctcttcttgctgccagaacacttcgttaa

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

No ontology terms assigned.

KEGG Pathways

Metabolic & Signaling

No pathways identified.

Pfam Domains

Protein Families

Suc_Fer-like

Protein Analysis

300

Amino Acids

33.44

Weight (kDa)

7.12

Isoelectric Point (pI)

45.1

Instability Index

Protein Domains (Pfam)

No Pfam domains detected for this protein.

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

Style Settings

Font Size (px)

Line Width

Align Labels (Cladogram)

Image

Tree File

Tip: Beautify your tree with professional tools

Download the Full Tree (.nwk) file, then upload it to any of the following tools to customize colors, fonts, annotations, clades, and branch support.

Publication-ready

iTOL Interactive Tree Of Life · Most popular EvolView Flexible annotations MEGA Desktop phylogenetics suite FigTree Desktop tree editor

Orthologous Genes (Group: OG0007599)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT4G26620 AT5G55900 AT5G55900
fragaria_vesca	FvH4_2g11400 FvH4_3g42740 FvH4_3g42740 FvH4_6g21150
malus_domestica	MD03G1029300.v1.1 MD11G1032600.v1.1
prunus_persica	Prupe.6G025400_v2.0.a1 Prupe.6G025400_v2.0.a1 Prupe.6G025400_v2.0.a1
pyrus_communis	pycom03g02420 pycom11g02820
rosa_chinensis	RchiOBHm_Chr5g0076471
rosa_laevigata	RLG00000036622
rosa_multiflora	Rmu_ssc0000184.1_g000039
rosa_roxburghii	Rroxscaffold_1G00005430
rosa_rugosa	Rorug05G0448400
rosa_samantha	Rh5AG503100 Rh5BG524800 Rh5CG548400 Rh5DG536600
rosa_wichuraiana	Rw5G046660

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AarI	CACCTGC	1 cut(s)	286
Acc36I	ACCTGC	1 cut(s)	286
AccBSI	CCGCTC	2 cut(s)	91, 186
AccI	GTMKAC	2 cut(s)	550, 729
AccII	CGCG	2 cut(s)	182, 356
AccIII	TCCGGA	1 cut(s)	225
AciI	CCGC	7 cut(s)	89, 186, 293, 305, 320, 323, 356
AclWI	GGATC	2 cut(s)	489, 634
AcoI	YGGCCR	3 cut(s)	302, 357, 652
AcsI	RAATTY	1 cut(s)	115
AcyI	GRCGYC	2 cut(s)	47, 195
AfaI	GTAC	1 cut(s)	687
AfiI	CCNNNNNNNGG	4 cut(s)	95, 126, 157, 204
AgsI	TTSAA	2 cut(s)	438, 844
AjiI	CACGTC	1 cut(s)	60
AjnI	CCWGG	1 cut(s)	860
AloI	GAACNNNNNNTCC	2 cut(s)	780, 812
AluBI	AGCT	2 cut(s)	147, 875
AluI	AGCT	2 cut(s)	147, 875
Alw26I	GTCTC	3 cut(s)	9, 15, 425
AlwI	GGATC	2 cut(s)	489, 634
Ama87I	CYCGRG	1 cut(s)	12
Aor13HI	TCCGGA	1 cut(s)	225
AoxI	GGCC	5 cut(s)	302, 357, 503, 572, 652
ApeKI	GCWGC	5 cut(s)	189, 337, 346, 703, 884
ApoI	RAATTY	1 cut(s)	115
ArsI	GACNNNNNNTTYG	2 cut(s)	185, 217
AseI	ATTAAT	1 cut(s)	452
Asp700I	GAANNNNTTC	1 cut(s)	876
AspLEI	GCGC	3 cut(s)	11, 137, 182
AspS9I	GGNCC	2 cut(s)	129, 503
AsuC2I	CCSGG	1 cut(s)	142
AsuHPI	GGTGA	1 cut(s)	455
AsuNHI	GCTAGC	1 cut(s)	5
AvaI	CYCGRG	1 cut(s)	12
AvaII	GGWCC	1 cut(s)	129
BaeGI	GKGCMC	1 cut(s)	420
BalI	TGGCCA	1 cut(s)	654
BbsI	GAAGAC	1 cut(s)	57
BbvI	GCAGC	5 cut(s)	201, 324, 333, 715, 871
BccI	CCATC	3 cut(s)	61, 358, 416
BceAI	ACGGC	2 cut(s)	344, 471
BciT130I	CCWGG	1 cut(s)	862
BclI	TGATCA	2 cut(s)	468, 513
BcnI	CCSGG	1 cut(s)	142
BcoDI	GTCTC	3 cut(s)	9, 15, 425
BfaI	CTAG	2 cut(s)	6, 177
BfoI	RGCGCY	2 cut(s)	12, 138
BfuAI	ACCTGC	1 cut(s)	286
BglI	GCCNNNNNGGC	1 cut(s)	365
BisI	GCNGC	9 cut(s)	187, 190, 305, 321, 338, 347, 357, 704, 885
BlsI	GCNGC	9 cut(s)	188, 191, 306, 322, 339, 348, 358, 705, 886
Bme1390I	CCNGG	2 cut(s)	142, 862
Bme18I	GGWCC	1 cut(s)	129
BmeT110I	CYCGRG	1 cut(s)	12
BmgBI	CACGTC	1 cut(s)	60
BmgT120I	GGNCC	2 cut(s)	129, 503
BmiI	GGNNCC	3 cut(s)	101, 130, 797
BmrFI	CCNGG	2 cut(s)	142, 862
BmtI	GCTAGC	1 cut(s)	9
BpiI	GAAGAC	1 cut(s)	57
BpmI	CTGGAG	2 cut(s)	660, 782
BpuEI	CTTGAG	3 cut(s)	719, 768, 821
BpuMI	CCSGG	1 cut(s)	142
BsaHI	GRCGYC	2 cut(s)	47, 195
BsaI	GGTCTC	1 cut(s)	9
BsaJI	CCNNGG	2 cut(s)	308, 341
BsaWI	WCCGGW	1 cut(s)	225
BsaXI	ACNNNNNCTCC	4 cut(s)	711, 741, 780, 810
Bsc4I	CCNNNNNNNGG	4 cut(s)	95, 126, 157, 204
Bse118I	RCCGGY	1 cut(s)	242
Bse1I	ACTGG	3 cut(s)	655, 662, 737
BseAI	TCCGGA	1 cut(s)	225
BseBI	CCWGG	1 cut(s)	862
BseDI	CCNNGG	2 cut(s)	308, 341
BseGI	GGATG	1 cut(s)	53
BseLI	CCNNNNNNNGG	4 cut(s)	95, 126, 157, 204
BseMII	CTCAG	1 cut(s)	420
BseNI	ACTGG	3 cut(s)	655, 662, 737
BseRI	GAGGAG	2 cut(s)	385, 732
BseSI	GKGCMC	1 cut(s)	420
BseX3I	CGGCCG	1 cut(s)	357
BseXI	GCAGC	5 cut(s)	201, 324, 333, 715, 871
Bsh1236I	CGCG	2 cut(s)	182, 356
Bsh1285I	CGRYCG	1 cut(s)	360
BshFI	GGCC	5 cut(s)	304, 359, 505, 574, 654
BsiEI	CGRYCG	1 cut(s)	360
BsiHKCI	CYCGRG	1 cut(s)	12
BsiSI	CCGG	3 cut(s)	141, 226, 243
BslFI	GGGAC	1 cut(s)	142
BslI	CCNNNNNNNGG	4 cut(s)	95, 126, 157, 204
BsmAI	GTCTC	3 cut(s)	9, 15, 425
BsmBI	CGTCTC	1 cut(s)	15
BsmFI	GGGAC	1 cut(s)	142
BsnI	GGCC	5 cut(s)	304, 359, 505, 574, 654
Bso31I	GGTCTC	1 cut(s)	9
BsoBI	CYCGRG	1 cut(s)	12
Bsp1286I	GDGCHC	1 cut(s)	420
Bsp13I	TCCGGA	1 cut(s)	225
Bsp143I	GATC	5 cut(s)	331, 468, 481, 513, 626
BspACI	CCGC	7 cut(s)	89, 186, 293, 305, 320, 323, 356
BspANI	GGCC	5 cut(s)	304, 359, 505, 574, 654
BspCNI	CTCAG	1 cut(s)	421
BspEI	TCCGGA	1 cut(s)	225
BspFNI	CGCG	2 cut(s)	182, 356
BspLI	GGNNCC	3 cut(s)	101, 130, 797
BspMI	ACCTGC	1 cut(s)	286
BspOI	GCTAGC	1 cut(s)	9
BspPI	GGATC	2 cut(s)	489, 634
BspQI	GCTCTTC	1 cut(s)	882
BspTNI	GGTCTC	1 cut(s)	9
BsrBI	CCGCTC	2 cut(s)	91, 186
BsrFI	RCCGGY	1 cut(s)	242
BsrI	ACTGG	3 cut(s)	655, 662, 737
BssAI	RCCGGY	1 cut(s)	242
BssECI	CCNNGG	2 cut(s)	308, 341
BssMI	GATC	5 cut(s)	331, 468, 481, 513, 626
BssNI	GRCGYC	2 cut(s)	47, 195
Bst2UI	CCWGG	1 cut(s)	862
Bst4CI	ACNGT	1 cut(s)	250
Bst6I	CTCTTC	2 cut(s)	525, 882
BstACI	GRCGYC	2 cut(s)	47, 195
BstC8I	GCNNGC	3 cut(s)	7, 184, 244
BstDEI	CTNAG	2 cut(s)	429, 791
BstF5I	GGATG	1 cut(s)	53
BstFNI	CGCG	2 cut(s)	182, 356
BstH2I	RGCGCY	2 cut(s)	12, 138
BstHHI	GCGC	3 cut(s)	11, 137, 182
BstKTI	GATC	5 cut(s)	334, 471, 484, 516, 629
BstMAI	GTCTC	3 cut(s)	9, 15, 425
BstMBI	GATC	5 cut(s)	331, 468, 481, 513, 626
BstMCI	CGRYCG	1 cut(s)	360
BstMWI	GCNNNNNNNGC	7 cut(s)	186, 301, 343, 346, 365, 703, 881
BstNI	CCWGG	1 cut(s)	862
BstNSI	RCATGY	1 cut(s)	272
BstSCI	CCNGG	2 cut(s)	140, 860
BstSLI	GKGCMC	1 cut(s)	420
BstUI	CGCG	2 cut(s)	182, 356
BstV1I	GCAGC	5 cut(s)	201, 324, 333, 715, 871
BstV2I	GAAGAC	1 cut(s)	57
BstXI	CCANNNNNNTGG	2 cut(s)	662, 806
BstZI	CGGCCG	1 cut(s)	357
BsuRI	GGCC	5 cut(s)	304, 359, 505, 574, 654
BtrI	CACGTC	1 cut(s)	60
BtsCI	GGATG	1 cut(s)	53
BtsIMutI	CAGTG	2 cut(s)	648, 655
BveI	ACCTGC	1 cut(s)	286
Cac8I	GCNNGC	3 cut(s)	7, 184, 244
CfoI	GCGC	3 cut(s)	11, 137, 182
Cfr10I	RCCGGY	1 cut(s)	242
Cfr13I	GGNCC	2 cut(s)	129, 503
CseI	GACGC	2 cut(s)	55, 203
Csp6I	GTAC	1 cut(s)	686
CviAII	CATG	4 cut(s)	269, 466, 545, 576
CviQI	GTAC	1 cut(s)	686
DdeI	CTNAG	2 cut(s)	429, 791
DpnI	GATC	5 cut(s)	333, 470, 483, 515, 628
DpnII	GATC	5 cut(s)	331, 468, 481, 513, 626
EaeI	YGGCCR	3 cut(s)	302, 357, 652
EagI	CGGCCG	1 cut(s)	357
Eam1104I	CTCTTC	2 cut(s)	525, 882
EarI	CTCTTC	2 cut(s)	525, 882
EciI	GGCGGA	1 cut(s)	338
EclXI	CGGCCG	1 cut(s)	357
Eco31I	GGTCTC	1 cut(s)	9
Eco32I	GATATC	1 cut(s)	81
Eco47I	GGWCC	1 cut(s)	129
Eco52I	CGGCCG	1 cut(s)	357
Eco88I	CYCGRG	1 cut(s)	12
EcoRI	GAATTC	1 cut(s)	115
EcoRII	CCWGG	1 cut(s)	860
EcoRV	GATATC	1 cut(s)	81
Esp3I	CGTCTC	1 cut(s)	15
FaeI	CATG	4 cut(s)	272, 469, 548, 579
FalI	AAGNNNNNCTT	2 cut(s)	864, 896
FaqI	GGGAC	1 cut(s)	142
FatI	CATG	4 cut(s)	268, 465, 544, 575
FauI	CCCGC	2 cut(s)	96, 300
FbaI	TGATCA	2 cut(s)	468, 513
FblI	GTMKAC	2 cut(s)	550, 729
Fnu4HI	GCNGC	9 cut(s)	187, 190, 305, 321, 338, 347, 357, 704, 885
FokI	GGATG	1 cut(s)	40
Fsp4HI	GCNGC	9 cut(s)	187, 190, 305, 321, 338, 347, 357, 704, 885
FspBI	CTAG	2 cut(s)	6, 177
GlaI	GCGC	3 cut(s)	10, 136, 181
GluI	GCNGC	9 cut(s)	187, 190, 305, 321, 338, 347, 357, 704, 885
GsuI	CTGGAG	2 cut(s)	660, 782
HaeII	RGCGCY	2 cut(s)	12, 138
HaeIII	GGCC	5 cut(s)	304, 359, 505, 574, 654
HapII	CCGG	3 cut(s)	141, 226, 243
HgaI	GACGC	2 cut(s)	55, 203
HhaI	GCGC	3 cut(s)	11, 137, 182
Hin1I	GRCGYC	2 cut(s)	47, 195
Hin1II	CATG	4 cut(s)	272, 469, 548, 579
Hin6I	GCGC	3 cut(s)	9, 135, 180
HinP1I	GCGC	3 cut(s)	9, 135, 180
HincII	GTYRAC	1 cut(s)	236
HindII	GTYRAC	1 cut(s)	236
HinfI	GANTC	6 cut(s)	26, 232, 394, 495, 522, 812
HpaII	CCGG	3 cut(s)	141, 226, 243
HphI	GGTGA	1 cut(s)	455
Hpy166II	GTNNAC	4 cut(s)	236, 551, 581, 730
Hpy188I	TCNGA	6 cut(s)	85, 109, 264, 473, 527, 763
Hpy188III	TCNNGA	5 cut(s)	127, 151, 226, 677, 785
Hpy8I	GTNNAC	4 cut(s)	236, 551, 581, 730
Hpy99I	CGWCG	4 cut(s)	49, 64, 98, 197
HpyAV	CCTTC	1 cut(s)	407
HpyCH4III	ACNGT	1 cut(s)	250
HpyCH4IV	ACGT	1 cut(s)	59
HpyCH4V	TGCA	2 cut(s)	544, 605
HpyF10VI	GCNNNNNNNGC	7 cut(s)	186, 301, 343, 346, 365, 703, 881
HpyF3I	CTNAG	2 cut(s)	429, 791
HpySE526I	ACGT	1 cut(s)	59
Hsp92I	GRCGYC	2 cut(s)	47, 195
Hsp92II	CATG	4 cut(s)	272, 469, 548, 579
HspAI	GCGC	3 cut(s)	9, 135, 180
Kpn2I	TCCGGA	1 cut(s)	225
KroI	GCCGGC	1 cut(s)	242
KroNI	GCCGGC	1 cut(s)	244
Ksp22I	TGATCA	2 cut(s)	468, 513
Kzo9I	GATC	5 cut(s)	331, 468, 481, 513, 626
LguI	GCTCTTC	1 cut(s)	882
LmnI	GCTCC	5 cut(s)	39, 144, 354, 679, 801
Lsp1109I	GCAGC	5 cut(s)	201, 324, 333, 715, 871
MaeI	CTAG	2 cut(s)	6, 177
MaeII	ACGT	1 cut(s)	59
MaeIII	GTNAC	1 cut(s)	646
MalI	GATC	5 cut(s)	333, 470, 483, 515, 628
MbiI	CCGCTC	2 cut(s)	91, 186
MboI	GATC	5 cut(s)	331, 468, 481, 513, 626
MboII	GAAGA	6 cut(s)	57, 542, 692, 776, 787, 869
MfeI	CAATTG	1 cut(s)	692
MhlI	GDGCHC	1 cut(s)	420
MlsI	TGGCCA	1 cut(s)	654
MluCI	AATT	6 cut(s)	115, 453, 615, 692, 723, 845
MluNI	TGGCCA	1 cut(s)	654
MlyI	GAGTC	5 cut(s)	20, 241, 388, 504, 821
MmeI	TCCRAC	2 cut(s)	108, 132
Mox20I	TGGCCA	1 cut(s)	654
MroI	TCCGGA	1 cut(s)	225
MroNI	GCCGGC	1 cut(s)	242
MroXI	GAANNNNTTC	1 cut(s)	876
MscI	TGGCCA	1 cut(s)	654
MseI	TTAA	3 cut(s)	401, 452, 901
MslI	CAYNNNNRTG	2 cut(s)	600, 660
Msp20I	TGGCCA	1 cut(s)	654
MspI	CCGG	3 cut(s)	141, 226, 243
MspR9I	CCNGG	2 cut(s)	142, 862
MunI	CAATTG	1 cut(s)	692
MvaI	CCWGG	1 cut(s)	862
MvnI	CGCG	2 cut(s)	182, 356
MwoI	GCNNNNNNNGC	7 cut(s)	186, 301, 343, 346, 365, 703, 881
NaeI	GCCGGC	1 cut(s)	244
NciI	CCSGG	1 cut(s)	142
NdeII	GATC	5 cut(s)	331, 468, 481, 513, 626
NgoMIV	GCCGGC	1 cut(s)	242
NheI	GCTAGC	1 cut(s)	5
NlaIII	CATG	4 cut(s)	272, 469, 548, 579
NlaIV	GGNNCC	3 cut(s)	101, 130, 797
NmeAIII	GCCGAG	3 cut(s)	223, 333, 366
NmuCI	GTSAC	1 cut(s)	646
NspI	RCATGY	1 cut(s)	272
PaqCI	CACCTGC	1 cut(s)	286
PciSI	GCTCTTC	1 cut(s)	882
PcsI	WCGNNNNNNNCGW	1 cut(s)	68
PdiI	GCCGGC	1 cut(s)	244
PdmI	GAANNNNTTC	1 cut(s)	876
PfeI	GAWTC	1 cut(s)	522
PfoI	TCCNGGA	1 cut(s)	140
PkrI	GCNGC	9 cut(s)	188, 191, 306, 322, 339, 348, 358, 705, 886
PleI	GAGTC	5 cut(s)	20, 240, 388, 503, 820
PpsI	GAGTC	5 cut(s)	20, 240, 388, 503, 820
PshBI	ATTAAT	1 cut(s)	452
Psp6I	CCWGG	1 cut(s)	860
PspGI	CCWGG	1 cut(s)	860
PspN4I	GGNNCC	3 cut(s)	101, 130, 797
PspPI	GGNCC	2 cut(s)	129, 503
RsaI	GTAC	1 cut(s)	687
RsaNI	GTAC	1 cut(s)	686
RseI	CAYNNNNRTG	2 cut(s)	600, 660
SapI	GCTCTTC	1 cut(s)	882
SaqAI	TTAA	3 cut(s)	401, 452, 901
SatI	GCNGC	9 cut(s)	187, 190, 305, 321, 338, 347, 357, 704, 885
Sau3AI	GATC	5 cut(s)	331, 468, 481, 513, 626
Sau96I	GGNCC	2 cut(s)	129, 503
SchI	GAGTC	5 cut(s)	20, 241, 388, 504, 821
ScrFI	CCNGG	2 cut(s)	142, 862
SduI	GDGCHC	1 cut(s)	420
SetI	ASST	6 cut(s)	62, 149, 300, 559, 691, 877
SinI	GGWCC	1 cut(s)	129
SmiMI	CAYNNNNRTG	2 cut(s)	600, 660
SmlI	CTYRAG	3 cut(s)	698, 783, 836
SmoI	CTYRAG	3 cut(s)	698, 783, 836
Sse9I	AATT	6 cut(s)	115, 453, 615, 692, 723, 845
SsiI	CCGC	7 cut(s)	89, 186, 293, 305, 320, 323, 356
SspMI	CTAG	2 cut(s)	6, 177
StyD4I	CCNGG	2 cut(s)	140, 860
TaaI	ACNGT	1 cut(s)	250
TaiI	ACGT	1 cut(s)	62
TaqI	TCGA	2 cut(s)	93, 212
TaqII	GACCGA	1 cut(s)	33
TasI	AATT	6 cut(s)	115, 453, 615, 692, 723, 845
TauI	GCSGC	4 cut(s)	189, 307, 323, 359
TfiI	GAWTC	1 cut(s)	522
Tru1I	TTAA	3 cut(s)	401, 452, 901
Tru9I	TTAA	3 cut(s)	401, 452, 901
TscAI	CASTG	2 cut(s)	655, 662
TseFI	GTSAC	1 cut(s)	646
TseI	GCWGC	5 cut(s)	189, 337, 346, 703, 884
Tsp45I	GTSAC	1 cut(s)	646
TspGWI	ACGGA	1 cut(s)	884
TspRI	CASTG	2 cut(s)	655, 662
VpaK11BI	GGWCC	1 cut(s)	129
VspI	ATTAAT	1 cut(s)	452
XapI	RAATTY	1 cut(s)	115
XceI	RCATGY	1 cut(s)	272
XmiI	GTMKAC	2 cut(s)	550, 729
XmnI	GAANNNNTTC	1 cut(s)	876
XspI	CTAG	2 cut(s)	6, 177

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.