FvH4_3g42740

Sucrase/ferredoxin-like

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
fragaria_vesca
Fvb3
OG0007599
Physical Location & Seq
Reverse (-)
35714808 .. 35718150
3343 bp
Loading structure...
UTR
Exon/CDS
Intron
FvH4_3g42740.t2

Sequence Viewer

Length: 1476 bp
ATGGCTACGGCGGCCAGAGACCGAACCTACGACGCGTCGTCTTCTTCCCTCTCATTATTCGCCGCCCCGTCGTCCTCCTCCTCCCCGATTGTCATATCCGACCCGCTCGCTTCTGACCCGAACCCGCACCACGCCTTCGGCGGCAGCAGCGCCTCCGGGAGCTTCCAGAACGAGGGCCTCCTGGCCGACAACAACAGCGGCGGCGGCGGCGAGGCGGAGTTCGGGTTCTTGAGAGCCGAGTTCCGGACGAGTCAACTCGCCGGGACGGTGGAGTTTTACGAGAGGCATGTGTTTTTGTGCTACAAGAACCCGGCGGTGTGGCCGCCGAGGATCGAGGCGGCGGAGTTTGATCGGCTGCCGAGGCTGCTGTACGCGGCGGTGATGGCGAGGAGGGGTGATATGAGGAAAGAGACTCGCTTAACAATATGTGAAGGGCATGATGGAACTGAGACGTCAAATGGTGATGTATTAATATTCCCCGACATGATCAGATACAGGAGATTGACACATTTTGATGTTGACACATTCGTTGAAGAAGTTCTTGTGAAGGATGGTGAGTGGCTGCCTGGAACTCCTGAAACTCTGAGGGGTTCATACGTATTTGTATGTTCTCATGGGTCCAGGGATCGCCGTTGTGGAGTCTGTGGACCTCCCTTGATCAGTAGATTCAGAGAAGAGATAGATTTGCATGGTCTACAAGGTAAAGTGTCTGTTAGGCCATGTTCTCACATTGGGGGGCATAAGTATGCAGGAAATGTTATTATATTTGGATCAAGTATCAACAAAGAAGTCACTGGCCACTGGTACGGAAGTTTGTGCCCCAAGTCATTTAACTTTTTCTTCTTTTTGCGGTTCTCATTTCCAGTGGCTTCGTACTGTAATCCAGTTCTATTATTTACCATAATGATATATGAGCTATCTGATCATTCTATTTCTCATAGGTATGGATATGTTGCTCCAGAAGATGTACCTCAATTGCTTGAGCAACATATTGGGAGAGGAGAAATTGTAGACTGGCTGTGGAGGGGTCAAATGGGTTTATCGGAAGAACAACAAAAGAAATCTCAAGAATTAAGGCTCCAGCTTAATGGCGAGTCCAATGTGGAGAAAACTAGTACAGAGCTGACACAAACGAATGTAAGGGGGATGAATACTGGTCCATGCAGATCTCAAGATGAATTTGGAGGCTGTTGCCAGGAGAATGGAAGTAATTCGTGCTGCCAGAGCACTATGTTAATAGATAGGATTAGTAGTCCTGATTCAAATGCGGTGGCAACACAAGCGACATCTGAAAAGAAAAAGAGCAGCAGCAAACCACTTTCACATAGAGGGAAAGCTGCATCCGCTCGGAAGTTTTGCTCTATGCCTACATGGTCTGAGAGCTGGGAGCGGGAAGATACATATGCAGCTTTGGCTATTGTCTGTGCTGCTGTGTCGGTTGGTATTGCTTACAGTTGCTACAAACATTTGAGATGA
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
No ontology terms assigned.
KEGG Pathways
Metabolic & Signaling
No pathways identified.
Pfam Domains
Protein Families
Suc_Fer-like

Protein Analysis

492

Amino Acids

54.34

Weight (kDa)

6.33

Isoelectric Point (pI)

42.84

Instability Index
Protein Domains (Pfam)
Domain Name Pfam ID Position E-value Description
Suc_Fer-like PF06999 86 - 297 1.1e-44 Sucrase/ferredoxin-like
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
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Publication-ready
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Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AatII GACGTC 1 cut(s) 455
AccBSI CCGCTC 3 cut(s) 106, 1346, 1390
AccI GTMKAC 2 cut(s) 694, 1011
AccII CGCG 2 cut(s) 35, 374
AccIII TCCGGA 1 cut(s) 243
AclWI GGATC 3 cut(s) 338, 633, 778
AcoI YGGCCR 4 cut(s) 12, 183, 320, 796
AcsI RAATTY 1 cut(s) 1178
AcyI GRCGYC 1 cut(s) 452
AfaI GTAC 5 cut(s) 371, 806, 875, 969, 1117
AfiI CCNNNNNNNGG 2 cut(s) 172, 243
AflIII ACRYGT 1 cut(s) 33
AgsI TTSAA 2 cut(s) 533, 1263
AhdI GACNNNNNGTC 1 cut(s) 37
AhlI ACTAGT 1 cut(s) 1112
AjnI CCWGG 4 cut(s) 180, 565, 620, 1194
AloI GAACNNNNNNTCC 2 cut(s) 209, 241
AluBI AGCT 7 cut(s) 162, 916, 1084, 1123, 1337, 1383, 1409
AluI AGCT 7 cut(s) 162, 916, 1084, 1123, 1337, 1383, 1409
Alw21I GWGCWC 1 cut(s) 1229
Alw26I GTCTC 3 cut(s) 12, 404, 443
AlwI GGATC 3 cut(s) 338, 633, 778
Aor13HI TCCGGA 1 cut(s) 243
AoxI GGCC 6 cut(s) 12, 175, 183, 320, 716, 796
ApoI RAATTY 1 cut(s) 1178
AseI ATTAAT 1 cut(s) 470
Asp700I GAANNNNTTC 2 cut(s) 537, 1210
AspLEI GCGC 1 cut(s) 152
AspS9I GGNCC 4 cut(s) 175, 618, 647, 1157
AsuC2I CCSGG 3 cut(s) 157, 262, 311
AsuHPI GGTGA 4 cut(s) 391, 407, 473, 566
AvaII GGWCC 3 cut(s) 618, 647, 1157
BaeGI GKGCMC 1 cut(s) 821
BaeI ACNNNNGTAYC 2 cut(s) 796, 829
BalI TGGCCA 1 cut(s) 798
BbsI GAAGAC 1 cut(s) 33
Bbv12I GWGCWC 1 cut(s) 1229
BccI CCATC 3 cut(s) 376, 434, 545
BceAI ACGGC 2 cut(s) 24, 615
BciT130I CCWGG 4 cut(s) 182, 567, 622, 1196
BclI TGATCA 3 cut(s) 486, 657, 922
BcnI CCSGG 3 cut(s) 157, 262, 311
BcoDI GTCTC 3 cut(s) 12, 404, 443
BcuI ACTAGT 1 cut(s) 1112
BfaI CTAG 1 cut(s) 1113
BfoI RGCGCY 1 cut(s) 153
BglII AGATCT 1 cut(s) 1166
Bme1390I CCNGG 7 cut(s) 157, 182, 262, 311, 567, 622, 1196
Bme18I GGWCC 3 cut(s) 618, 647, 1157
BmeRI GACNNNNNGTC 1 cut(s) 37
BmgT120I GGNCC 4 cut(s) 175, 618, 647, 1157
BmiI GGNNCC 2 cut(s) 619, 1079
BmrFI CCNGG 7 cut(s) 157, 182, 262, 311, 567, 622, 1196
BmsI GCATC 1 cut(s) 1349
BpiI GAAGAC 1 cut(s) 33
BpmI CTGGAG 2 cut(s) 942, 1064
BpuEI CTTGAG 4 cut(s) 250, 1001, 1050, 1155
BpuMI CCSGG 3 cut(s) 157, 262, 311
BsaAI YACGTR 1 cut(s) 598
BsaHI GRCGYC 1 cut(s) 452
BsaI GGTCTC 1 cut(s) 12
BsaJI CCNNGG 3 cut(s) 326, 359, 621
BsaWI WCCGGW 1 cut(s) 243
BsaXI ACNNNNNCTCC 4 cut(s) 209, 239, 993, 1023
Bsc4I CCNNNNNNNGG 2 cut(s) 172, 243
Bse1I ACTGG 6 cut(s) 799, 806, 863, 884, 1019, 1159
BseAI TCCGGA 1 cut(s) 243
BseBI CCWGG 4 cut(s) 182, 567, 622, 1196
BseDI CCNNGG 3 cut(s) 326, 359, 621
BseGI GGATG 3 cut(s) 556, 1152, 1340
BseLI CCNNNNNNNGG 2 cut(s) 172, 243
BseMII CTCAG 3 cut(s) 438, 575, 1368
BseNI ACTGG 6 cut(s) 799, 806, 863, 884, 1019, 1159
BseRI GAGGAG 4 cut(s) 67, 70, 403, 1014
BseSI GKGCMC 1 cut(s) 821
BseYI CCCAGC 1 cut(s) 1383
Bsh1236I CGCG 2 cut(s) 35, 374
BshFI GGCC 6 cut(s) 14, 177, 185, 322, 718, 798
BsiHKAI GWGCWC 1 cut(s) 1229
BsiSI CCGG 4 cut(s) 156, 244, 261, 311
BslFI GGGAC 1 cut(s) 277
BslI CCNNNNNNNGG 2 cut(s) 172, 243
BsmAI GTCTC 3 cut(s) 12, 404, 443
BsmBI CGTCTC 1 cut(s) 443
BsmFI GGGAC 1 cut(s) 277
BsnI GGCC 6 cut(s) 14, 177, 185, 322, 718, 798
Bso31I GGTCTC 1 cut(s) 12
Bsp1286I GDGCHC 2 cut(s) 821, 1229
Bsp13I TCCGGA 1 cut(s) 243
Bsp143I GATC 8 cut(s) 330, 349, 486, 625, 657, 770, 922, 1166
BspANI GGCC 6 cut(s) 14, 177, 185, 322, 718, 798
BspCNI CTCAG 3 cut(s) 439, 576, 1369
BspEI TCCGGA 1 cut(s) 243
BspFNI CGCG 2 cut(s) 35, 374
BspLI GGNNCC 2 cut(s) 619, 1079
BspPI GGATC 3 cut(s) 338, 633, 778
BspTNI GGTCTC 1 cut(s) 12
BsrBI CCGCTC 3 cut(s) 106, 1346, 1390
BsrI ACTGG 6 cut(s) 799, 806, 863, 884, 1019, 1159
BssECI CCNNGG 3 cut(s) 326, 359, 621
BssMI GATC 8 cut(s) 330, 349, 486, 625, 657, 770, 922, 1166
BssNI GRCGYC 1 cut(s) 452
Bst2UI CCWGG 4 cut(s) 182, 567, 622, 1196
Bst4CI ACNGT 3 cut(s) 268, 878, 1454
Bst6I CTCTTC 1 cut(s) 669
BstACI GRCGYC 1 cut(s) 452
BstBAI YACGTR 1 cut(s) 598
BstC8I GCNNGC 1 cut(s) 108
BstDEI CTNAG 3 cut(s) 447, 584, 1377
BstF5I GGATG 3 cut(s) 556, 1152, 1340
BstFNI CGCG 2 cut(s) 35, 374
BstH2I RGCGCY 1 cut(s) 153
BstHHI GCGC 1 cut(s) 152
BstKTI GATC 8 cut(s) 333, 352, 489, 628, 660, 773, 925, 1169
BstMAI GTCTC 3 cut(s) 12, 404, 443
BstMBI GATC 8 cut(s) 330, 349, 486, 625, 657, 770, 922, 1166
BstNI CCWGG 4 cut(s) 182, 567, 622, 1196
BstNSI RCATGY 1 cut(s) 290
BstSCI CCNGG 7 cut(s) 155, 180, 260, 309, 565, 620, 1194
BstSLI GKGCMC 1 cut(s) 821
BstSNI TACGTA 1 cut(s) 598
BstUI CGCG 2 cut(s) 35, 374
BstV2I GAAGAC 1 cut(s) 33
BstX2I RGATCY 1 cut(s) 1166
BstXI CCANNNNNNTGG 2 cut(s) 1088, 1202
BstYI RGATCY 1 cut(s) 1166
BsuRI GGCC 6 cut(s) 14, 177, 185, 322, 718, 798
BtsCI GGATG 3 cut(s) 556, 1152, 1340
BtsIMutI CAGTG 3 cut(s) 792, 799, 870
Cac8I GCNNGC 1 cut(s) 108
CfoI GCGC 1 cut(s) 152
Cfr13I GGNCC 4 cut(s) 175, 618, 647, 1157
CseI GACGC 2 cut(s) 24, 41
Csp6I GTAC 5 cut(s) 370, 805, 874, 968, 1116
CspCI CAANNNNNGTGG 2 cut(s) 1251, 1286
CviAII CATG 8 cut(s) 287, 437, 484, 614, 689, 720, 1161, 1371
CviQI GTAC 5 cut(s) 370, 805, 874, 968, 1116
DdeI CTNAG 3 cut(s) 447, 584, 1377
DpnI GATC 8 cut(s) 332, 351, 488, 627, 659, 772, 924, 1168
DpnII GATC 8 cut(s) 330, 349, 486, 625, 657, 770, 922, 1166
DriI GACNNNNNGTC 1 cut(s) 37
EaeI YGGCCR 4 cut(s) 12, 183, 320, 796
Eam1104I CTCTTC 1 cut(s) 669
Eam1105I GACNNNNNGTC 1 cut(s) 37
EarI CTCTTC 1 cut(s) 669
EciI GGCGGA 2 cut(s) 230, 356
Eco105I TACGTA 1 cut(s) 598
Eco31I GGTCTC 1 cut(s) 12
Eco47I GGWCC 3 cut(s) 618, 647, 1157
EcoO109I RGGNCCY 1 cut(s) 175
EcoRII CCWGG 4 cut(s) 180, 565, 620, 1194
Esp3I CGTCTC 1 cut(s) 443
FaeI CATG 8 cut(s) 290, 440, 487, 617, 692, 723, 1164, 1374
FalI AAGNNNNNCTT 2 cut(s) 525, 557
FaqI GGGAC 1 cut(s) 277
FatI CATG 8 cut(s) 286, 436, 483, 613, 688, 719, 1160, 1370
FauI CCCGC 3 cut(s) 111, 132, 1383
FauNDI CATATG 1 cut(s) 1402
FbaI TGATCA 3 cut(s) 486, 657, 922
FblI GTMKAC 2 cut(s) 694, 1011
FokI GGATG 3 cut(s) 563, 1159, 1327
FspBI CTAG 1 cut(s) 1113
GlaI GCGC 1 cut(s) 151
GsaI CCCAGC 1 cut(s) 1387
GsuI CTGGAG 2 cut(s) 942, 1064
HaeII RGCGCY 1 cut(s) 153
HaeIII GGCC 6 cut(s) 14, 177, 185, 322, 718, 798
HapII CCGG 4 cut(s) 156, 244, 261, 311
HgaI GACGC 2 cut(s) 24, 41
HhaI GCGC 1 cut(s) 152
Hin1I GRCGYC 1 cut(s) 452
Hin1II CATG 8 cut(s) 290, 440, 487, 617, 692, 723, 1164, 1374
Hin6I GCGC 1 cut(s) 150
HinP1I GCGC 1 cut(s) 150
HincII GTYRAC 2 cut(s) 254, 520
HindII GTYRAC 2 cut(s) 254, 520
HinfI GANTC 6 cut(s) 250, 412, 639, 666, 1094, 1259
HpaII CCGG 4 cut(s) 156, 244, 261, 311
HphI GGTGA 4 cut(s) 391, 407, 473, 566
Hpy166II GTNNAC 5 cut(s) 254, 520, 647, 695, 1012
Hpy188III TCNNGA 8 cut(s) 166, 229, 244, 575, 959, 1067, 1172, 1256
Hpy8I GTNNAC 5 cut(s) 254, 520, 647, 695, 1012
Hpy99I CGWCG 3 cut(s) 35, 40, 73
HpyAV CCTTC 3 cut(s) 145, 425, 541
HpyCH4III ACNGT 3 cut(s) 268, 878, 1454
HpyCH4IV ACGT 2 cut(s) 452, 597
HpyCH4V TGCA 5 cut(s) 688, 749, 1164, 1340, 1406
HpyF3I CTNAG 3 cut(s) 447, 584, 1377
HpySE526I ACGT 2 cut(s) 452, 597
Hsp92I GRCGYC 1 cut(s) 452
Hsp92II CATG 8 cut(s) 290, 440, 487, 617, 692, 723, 1164, 1374
HspAI GCGC 1 cut(s) 150
Kpn2I TCCGGA 1 cut(s) 243
Ksp22I TGATCA 3 cut(s) 486, 657, 922
Kzo9I GATC 8 cut(s) 330, 349, 486, 625, 657, 770, 922, 1166
LmnI GCTCC 4 cut(s) 159, 961, 1083, 1387
LweI GCATC 1 cut(s) 1349
MaeI CTAG 1 cut(s) 1113
MaeII ACGT 2 cut(s) 452, 597
MaeIII GTNAC 1 cut(s) 790
MalI GATC 8 cut(s) 332, 351, 488, 627, 659, 772, 924, 1168
MbiI CCGCTC 3 cut(s) 106, 1346, 1390
MboI GATC 8 cut(s) 330, 349, 486, 625, 657, 770, 922, 1166
MboII GAAGA 8 cut(s) 33, 36, 545, 686, 832, 974, 1058, 1406
MfeI CAATTG 1 cut(s) 974
MflI RGATCY 1 cut(s) 1166
MhlI GDGCHC 2 cut(s) 821, 1229
MlsI TGGCCA 1 cut(s) 798
MluCI AATT 5 cut(s) 974, 1005, 1070, 1178, 1210
MluI ACGCGT 1 cut(s) 33
MluNI TGGCCA 1 cut(s) 798
MlyI GAGTC 4 cut(s) 259, 406, 648, 1103
MmeI TCCRAC 1 cut(s) 123
Mox20I TGGCCA 1 cut(s) 798
MroI TCCGGA 1 cut(s) 243
MroXI GAANNNNTTC 2 cut(s) 537, 1210
MscI TGGCCA 1 cut(s) 798
MseI TTAA 6 cut(s) 419, 470, 831, 1073, 1086, 1235
MslI CAYNNNNRTG 3 cut(s) 513, 744, 942
Msp20I TGGCCA 1 cut(s) 798
MspA1I CMGCKG 1 cut(s) 198
MspI CCGG 4 cut(s) 156, 244, 261, 311
MspR9I CCNGG 7 cut(s) 157, 182, 262, 311, 567, 622, 1196
MunI CAATTG 1 cut(s) 974
MvaI CCWGG 4 cut(s) 182, 567, 622, 1196
MvnI CGCG 2 cut(s) 35, 374
NciI CCSGG 3 cut(s) 157, 262, 311
NdeI CATATG 1 cut(s) 1402
NdeII GATC 8 cut(s) 330, 349, 486, 625, 657, 770, 922, 1166
NlaIII CATG 8 cut(s) 290, 440, 487, 617, 692, 723, 1164, 1374
NlaIV GGNNCC 2 cut(s) 619, 1079
NmeAIII GCCGAG 3 cut(s) 262, 351, 384
NmuCI GTSAC 1 cut(s) 790
NspI RCATGY 1 cut(s) 290
PdmI GAANNNNTTC 2 cut(s) 537, 1210
PfeI GAWTC 2 cut(s) 666, 1259
PfoI TCCNGGA 1 cut(s) 155
PleI GAGTC 4 cut(s) 258, 406, 647, 1102
PpsI GAGTC 4 cut(s) 258, 406, 647, 1102
Ppu21I YACGTR 1 cut(s) 598
PshBI ATTAAT 1 cut(s) 470
Psp6I CCWGG 4 cut(s) 180, 565, 620, 1194
PspFI CCCAGC 1 cut(s) 1383
PspGI CCWGG 4 cut(s) 180, 565, 620, 1194
PspN4I GGNNCC 2 cut(s) 619, 1079
PspPI GGNCC 4 cut(s) 175, 618, 647, 1157
PsuI RGATCY 1 cut(s) 1166
RsaI GTAC 5 cut(s) 371, 806, 875, 969, 1117
RsaNI GTAC 5 cut(s) 370, 805, 874, 968, 1116
RseI CAYNNNNRTG 3 cut(s) 513, 744, 942
SaqAI TTAA 6 cut(s) 419, 470, 831, 1073, 1086, 1235
Sau3AI GATC 8 cut(s) 330, 349, 486, 625, 657, 770, 922, 1166
Sau96I GGNCC 4 cut(s) 175, 618, 647, 1157
SchI GAGTC 4 cut(s) 259, 406, 648, 1103
ScrFI CCNGG 7 cut(s) 157, 182, 262, 311, 567, 622, 1196
SduI GDGCHC 2 cut(s) 821, 1229
SfaNI GCATC 1 cut(s) 1349
SinI GGWCC 3 cut(s) 618, 647, 1157
SmiMI CAYNNNNRTG 3 cut(s) 513, 744, 942
SmlI CTYRAG 4 cut(s) 229, 980, 1065, 1170
SmoI CTYRAG 4 cut(s) 229, 980, 1065, 1170
SnaBI TACGTA 1 cut(s) 598
SpeI ACTAGT 1 cut(s) 1112
Sse9I AATT 5 cut(s) 974, 1005, 1070, 1178, 1210
SspI AATATT 1 cut(s) 474
SspMI CTAG 1 cut(s) 1113
StyD4I CCNGG 7 cut(s) 155, 180, 260, 309, 565, 620, 1194
TaaI ACNGT 3 cut(s) 268, 878, 1454
TaiI ACGT 2 cut(s) 455, 600
TaqI TCGA 1 cut(s) 333
TaqII GACCGA 1 cut(s) 36
TasI AATT 5 cut(s) 974, 1005, 1070, 1178, 1210
TatI WGTACW 1 cut(s) 1115
TfiI GAWTC 2 cut(s) 666, 1259
Tru1I TTAA 6 cut(s) 419, 470, 831, 1073, 1086, 1235
Tru9I TTAA 6 cut(s) 419, 470, 831, 1073, 1086, 1235
TscAI CASTG 3 cut(s) 799, 806, 870
TseFI GTSAC 1 cut(s) 790
Tsp45I GTSAC 1 cut(s) 790
TspDTI ATGAA 3 cut(s) 582, 1163, 1191
TspGWI ACGGA 1 cut(s) 822
TspRI CASTG 3 cut(s) 799, 806, 870
VpaK11BI GGWCC 3 cut(s) 618, 647, 1157
VspI ATTAAT 1 cut(s) 470
XapI RAATTY 1 cut(s) 1178
XceI RCATGY 1 cut(s) 290
XmiI GTMKAC 2 cut(s) 694, 1011
XmnI GAANNNNTTC 2 cut(s) 537, 1210
XspI CTAG 1 cut(s) 1113
ZraI GACGTC 1 cut(s) 453
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.