Prupe.6G025400_v2.0.a1

Sucrase/ferredoxin-like

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
prunus_persica
Pp06
OG0007599
Physical Location & Seq
Forward (+)
2025597 .. 2029476
3880 bp
Loading structure...
UTR
Exon/CDS
Intron
Prupe.6G025400.1

Sequence Viewer

Length: 1308 bp
ATGGCCAGCGCCAGAGACAGAGACGACTCACTCACATTCACAAACCCATCAACGTCTTCCTCGCCAATCATCATCTCTGACCCATTTGACAGCTTTCTCTCCGACCCAAATTCCCACATCGGCAGCGCCTCTGGGAGCTTCCAGAACGAGGGTTTACTTGCTGATACTAGCAGCGATGCCGAGTTTGGGTTCTCACGCCCTGAGTTTCGGACGAGCCAACTCGCCGGGACTGTCGAGTTTTACCAGCGCCACGTGTTTTTGTGCTACAAGAACCCCCAGGTTTGGCCGCCCAGAATTGAGGCCGCCGAGTTTGATCGATTGCCAAGGTTGCTCTATGCCGCAGTAATGGCTAGGAGGGGTGATATGAAGAAAGAGACTCGCTTAACAATATGTGAAGGGCATGATGGAACTGAGACATCCAATGGTGATGTATTAATTTTCCCCGACATGATCCGATACAGGAGATTGACACATTTTGATGTTGATACATTTGTTGAAGAAGTTCTAGTGAAGGATGGTGAATGGCTGCCTGGTACTCCTGAAACTTTGAAGGGTTCGTATGTTTTTGTATGTTCTCATGGGTCTCGGGATCGCCGTTGTGGAGTCTGTGGACCTCCCCTGATCACTAGATTTAGAGAAGAGATAGAATTACATGGTCTTCAAGGTAAAGTGTCTGTTAGCCCATGTTCACACATTGGGGAGCATAAGTATGCAGGAAATGTTATTATATTTGGACCAAATTTCAACAGAAAAGTCACTGGCCACTGGTATGGATATGTTGCTCCAGAAGATGTACCTGTATTGCTTGAGCAGCATATCGGGAAAGGAGAAATTTTGGACTGGCTATGGAGGGGTCAGATGGGTTTATCAGAAGAACAGCAGAAGAAATCTCAAGAACTAAGGCTCCATCTTAATGGCGAGACAAATGTGGGAAAAAGCGCTACAGAGTTGACACAACCAAAGGAAAGGGAAATGAATACTAGTGTATGTAGATCTCAAGTTGAGATTGGCGGATGTTGCCAGGAAAATAGAAACTCTTCTTGCTGCCAGAATGCTGTGTTCATAGAAAAGTTAAACAGTCCTGATTTGAATGAGATGGCAGCAAAGGAGACGACTGACAAGAAAAAAAGCAGCAGGAATCTACTTTCAGGGATCAATAGCGGAAAAGGGGCCTCCACGCGCAAGGTTTGTGCTATGCCGACTTGGTTTCAGAGCTGGGAGCGTGAAGATACATATGCAGCTTTTGCTGTTGTTTGTGCTGCTGTGTCAGTTGGCATTGCTTACAGCTGCTACAAACAGTTGAGATGA
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
No ontology terms assigned.
KEGG Pathways
Metabolic & Signaling
No pathways identified.
Pfam Domains
Protein Families
Suc_Fer-like

Protein Analysis

436

Amino Acids

48.62

Weight (kDa)

6.05

Isoelectric Point (pI)

44.17

Instability Index
Protein Domains (Pfam)
No Pfam domains detected for this protein.
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
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Publication-ready
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Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AccII CGCG 1 cut(s) 1180
AciI CCGC 5 cut(s) 287, 303, 339, 1011, 1161
AclWI GGATC 3 cut(s) 445, 597, 1160
AcoI YGGCCR 3 cut(s) 3, 284, 760
AcsI RAATTY 3 cut(s) 109, 739, 831
AcvI CACGTG 1 cut(s) 253
AfaI GTAC 2 cut(s) 535, 795
AfeI AGCGCT 1 cut(s) 940
AfiI CCNNNNNNNGG 3 cut(s) 148, 186, 282
AflIII ACRYGT 1 cut(s) 252
AgsI TTSAA 5 cut(s) 497, 550, 662, 745, 1090
AhlI ACTAGT 1 cut(s) 980
AjnI CCWGG 3 cut(s) 276, 529, 1020
AloI GAACNNNNNNTCC 2 cut(s) 888, 920
AluBI AGCT 5 cut(s) 93, 138, 1215, 1241, 1287
AluI AGCT 5 cut(s) 93, 138, 1215, 1241, 1287
Alw26I GTCTC 7 cut(s) 9, 15, 368, 407, 588, 914, 1103
AlwI GGATC 3 cut(s) 445, 597, 1160
Ama87I CYCGRG 1 cut(s) 585
Aor51HI AGCGCT 1 cut(s) 940
AoxI GGCC 5 cut(s) 3, 284, 300, 760, 1170
ApoI RAATTY 3 cut(s) 109, 739, 831
AseI ATTAAT 1 cut(s) 434
Asp700I GAANNNNTTC 2 cut(s) 501, 1036
AspLEI GCGC 5 cut(s) 11, 128, 249, 941, 1182
AspS9I GGNCC 3 cut(s) 611, 734, 1170
AsuC2I CCSGG 1 cut(s) 226
AsuHPI GGTGA 3 cut(s) 371, 437, 530
AvaI CYCGRG 1 cut(s) 585
AvaII GGWCC 2 cut(s) 611, 734
BaeI ACNNNNGTAYC 2 cut(s) 477, 510
BalI TGGCCA 2 cut(s) 5, 762
BbrPI CACGTG 1 cut(s) 253
BbsI GAAGAC 2 cut(s) 48, 650
BccI CCATC 6 cut(s) 55, 398, 509, 853, 915, 1090
BceAI ACGGC 1 cut(s) 579
BciT130I CCWGG 3 cut(s) 278, 531, 1022
BclI TGATCA 1 cut(s) 621
BcnI CCSGG 1 cut(s) 226
BcoDI GTCTC 7 cut(s) 9, 15, 368, 407, 588, 914, 1103
BcuI ACTAGT 1 cut(s) 980
BfaI CTAG 5 cut(s) 168, 351, 506, 627, 981
BfmI CTRYAG 1 cut(s) 942
BfoI RGCGCY 4 cut(s) 12, 129, 250, 942
BglII AGATCT 1 cut(s) 992
Bme1390I CCNGG 4 cut(s) 226, 278, 531, 1022
Bme18I GGWCC 2 cut(s) 611, 734
BmeT110I CYCGRG 1 cut(s) 585
BmgT120I GGNCC 3 cut(s) 611, 734, 1170
BmiI GGNNCC 2 cut(s) 905, 1171
BmrFI CCNGG 4 cut(s) 226, 278, 531, 1022
BmsI GCATC 1 cut(s) 166
BpiI GAAGAC 2 cut(s) 48, 650
BpmI CTGGAG 1 cut(s) 768
BpuEI CTTGAG 3 cut(s) 827, 876, 981
BpuMI CCSGG 1 cut(s) 226
Bsa29I ATCGAT 1 cut(s) 316
BsaAI YACGTR 1 cut(s) 253
BsaI GGTCTC 1 cut(s) 588
BsaJI CCNNGG 2 cut(s) 276, 323
BsaXI ACNNNNNCTCC 4 cut(s) 692, 722, 888, 918
Bsc4I CCNNNNNNNGG 3 cut(s) 148, 186, 282
Bse1I ACTGG 3 cut(s) 763, 770, 845
Bse3DI GCAATG 1 cut(s) 1275
BseBI CCWGG 3 cut(s) 278, 531, 1022
BseCI ATCGAT 1 cut(s) 316
BseDI CCNNGG 2 cut(s) 276, 323
BseGI GGATG 3 cut(s) 416, 520, 1019
BseLI CCNNNNNNNGG 3 cut(s) 148, 186, 282
BseMI GCAATG 1 cut(s) 1275
BseMII CTCAG 2 cut(s) 192, 402
BseNI ACTGG 3 cut(s) 763, 770, 845
BseYI CCCAGC 1 cut(s) 1215
Bsh1236I CGCG 1 cut(s) 1180
BshFI GGCC 5 cut(s) 5, 286, 302, 762, 1172
BshVI ATCGAT 1 cut(s) 316
BsiHKCI CYCGRG 1 cut(s) 585
BsiSI CCGG 1 cut(s) 225
BslFI GGGAC 1 cut(s) 241
BslI CCNNNNNNNGG 3 cut(s) 148, 186, 282
BsmAI GTCTC 7 cut(s) 9, 15, 368, 407, 588, 914, 1103
BsmBI CGTCTC 2 cut(s) 15, 1103
BsmFI GGGAC 1 cut(s) 241
BsmI GAATGC 1 cut(s) 1057
BsnI GGCC 5 cut(s) 5, 286, 302, 762, 1172
Bso31I GGTCTC 1 cut(s) 588
BsoBI CYCGRG 1 cut(s) 585
Bsp143I GATC 6 cut(s) 313, 450, 589, 621, 992, 1152
BspACI CCGC 5 cut(s) 287, 303, 339, 1011, 1161
BspANI GGCC 5 cut(s) 5, 286, 302, 762, 1172
BspCNI CTCAG 2 cut(s) 193, 403
BspDI ATCGAT 1 cut(s) 316
BspFNI CGCG 1 cut(s) 1180
BspLI GGNNCC 2 cut(s) 905, 1171
BspPI GGATC 3 cut(s) 445, 597, 1160
BspTNI GGTCTC 1 cut(s) 588
BsrDI GCAATG 1 cut(s) 1275
BsrI ACTGG 3 cut(s) 763, 770, 845
BssECI CCNNGG 2 cut(s) 276, 323
BssMI GATC 6 cut(s) 313, 450, 589, 621, 992, 1152
BssT1I CCWWGG 1 cut(s) 323
Bst2UI CCWGG 3 cut(s) 278, 531, 1022
Bst4CI ACNGT 3 cut(s) 232, 1079, 1299
Bst6I CTCTTC 2 cut(s) 633, 1042
BstAPI GCANNNNNTGC 1 cut(s) 1244
BstBAI YACGTR 1 cut(s) 253
BstC8I GCNNGC 1 cut(s) 7
BstDEI CTNAG 3 cut(s) 201, 411, 899
BstF5I GGATG 3 cut(s) 416, 520, 1019
BstFNI CGCG 1 cut(s) 1180
BstH2I RGCGCY 4 cut(s) 12, 129, 250, 942
BstHHI GCGC 5 cut(s) 11, 128, 249, 941, 1182
BstKTI GATC 6 cut(s) 316, 453, 592, 624, 995, 1155
BstMAI GTCTC 7 cut(s) 9, 15, 368, 407, 588, 914, 1103
BstMBI GATC 6 cut(s) 313, 450, 589, 621, 992, 1152
BstMWI GCNNNNNNNGC 5 cut(s) 328, 347, 811, 1017, 1244
BstNI CCWGG 3 cut(s) 278, 531, 1022
BstSCI CCNGG 4 cut(s) 224, 276, 529, 1020
BstSFI CTRYAG 1 cut(s) 942
BstUI CGCG 1 cut(s) 1180
BstV2I GAAGAC 2 cut(s) 48, 650
BstX2I RGATCY 1 cut(s) 992
BstXI CCANNNNNNTGG 2 cut(s) 770, 914
BstYI RGATCY 1 cut(s) 992
Bsu15I ATCGAT 1 cut(s) 316
BsuRI GGCC 5 cut(s) 5, 286, 302, 762, 1172
BsuTUI ATCGAT 1 cut(s) 316
BtgZI GCGATG 1 cut(s) 189
BtsCI GGATG 3 cut(s) 416, 520, 1019
BtsIMutI CAGTG 2 cut(s) 756, 763
Cac8I GCNNGC 1 cut(s) 7
CfoI GCGC 5 cut(s) 11, 128, 249, 941, 1182
Cfr13I GGNCC 3 cut(s) 611, 734, 1170
ClaI ATCGAT 1 cut(s) 316
Csp6I GTAC 2 cut(s) 534, 794
CviAII CATG 5 cut(s) 401, 448, 578, 653, 684
CviQI GTAC 2 cut(s) 534, 794
DdeI CTNAG 3 cut(s) 201, 411, 899
DpnI GATC 6 cut(s) 315, 452, 591, 623, 994, 1154
DpnII GATC 6 cut(s) 313, 450, 589, 621, 992, 1152
EaeI YGGCCR 3 cut(s) 3, 284, 760
Eam1104I CTCTTC 2 cut(s) 633, 1042
EarI CTCTTC 2 cut(s) 633, 1042
EciI GGCGGA 1 cut(s) 1026
Eco130I CCWWGG 1 cut(s) 323
Eco31I GGTCTC 1 cut(s) 588
Eco47I GGWCC 2 cut(s) 611, 734
Eco47III AGCGCT 1 cut(s) 940
Eco72I CACGTG 1 cut(s) 253
Eco88I CYCGRG 1 cut(s) 585
EcoO109I RGGNCCY 1 cut(s) 1170
EcoRII CCWGG 3 cut(s) 276, 529, 1020
EcoT14I CCWWGG 1 cut(s) 323
ErhI CCWWGG 1 cut(s) 323
Esp3I CGTCTC 2 cut(s) 15, 1103
FaeI CATG 5 cut(s) 404, 451, 581, 656, 687
FaqI GGGAC 1 cut(s) 241
FatI CATG 5 cut(s) 400, 447, 577, 652, 683
FauNDI CATATG 1 cut(s) 1234
FbaI TGATCA 1 cut(s) 621
FokI GGATG 3 cut(s) 403, 527, 1026
FspBI CTAG 5 cut(s) 168, 351, 506, 627, 981
GlaI GCGC 5 cut(s) 10, 127, 248, 940, 1181
GsaI CCCAGC 1 cut(s) 1219
GsuI CTGGAG 1 cut(s) 768
HaeII RGCGCY 4 cut(s) 12, 129, 250, 942
HaeIII GGCC 5 cut(s) 5, 286, 302, 762, 1172
HapII CCGG 1 cut(s) 225
HhaI GCGC 5 cut(s) 11, 128, 249, 941, 1182
Hin1II CATG 5 cut(s) 404, 451, 581, 656, 687
Hin6I GCGC 5 cut(s) 9, 126, 247, 939, 1180
HinP1I GCGC 5 cut(s) 9, 126, 247, 939, 1180
HincII GTYRAC 1 cut(s) 951
HindII GTYRAC 1 cut(s) 951
HinfI GANTC 4 cut(s) 26, 376, 603, 1138
HpaII CCGG 1 cut(s) 225
HphI GGTGA 3 cut(s) 371, 437, 530
Hpy166II GTNNAC 4 cut(s) 155, 611, 689, 951
Hpy188I TCNGA 7 cut(s) 79, 103, 210, 455, 858, 871, 1212
Hpy188III TCNNGA 7 cut(s) 142, 539, 587, 785, 820, 893, 1082
Hpy8I GTNNAC 4 cut(s) 155, 611, 689, 951
HpyAV CCTTC 3 cut(s) 389, 505, 544
HpyCH4III ACNGT 3 cut(s) 232, 1079, 1299
HpyCH4IV ACGT 2 cut(s) 53, 252
HpyCH4V TGCA 2 cut(s) 713, 1238
HpyF10VI GCNNNNNNNGC 5 cut(s) 328, 347, 811, 1017, 1244
HpyF3I CTNAG 3 cut(s) 201, 411, 899
HpySE526I ACGT 2 cut(s) 53, 252
Hsp92II CATG 5 cut(s) 404, 451, 581, 656, 687
HspAI GCGC 5 cut(s) 9, 126, 247, 939, 1180
Ksp22I TGATCA 1 cut(s) 621
Kzo9I GATC 6 cut(s) 313, 450, 589, 621, 992, 1152
LmnI GCTCC 5 cut(s) 135, 700, 787, 909, 1219
LweI GCATC 1 cut(s) 166
MaeI CTAG 5 cut(s) 168, 351, 506, 627, 981
MaeII ACGT 2 cut(s) 53, 252
MaeIII GTNAC 1 cut(s) 754
MalI GATC 6 cut(s) 315, 452, 591, 623, 994, 1154
MboI GATC 6 cut(s) 313, 450, 589, 621, 992, 1152
MflI RGATCY 1 cut(s) 992
MlsI TGGCCA 2 cut(s) 5, 762
MluCI AATT 6 cut(s) 109, 294, 435, 647, 739, 831
MluNI TGGCCA 2 cut(s) 5, 762
MlyI GAGTC 3 cut(s) 20, 370, 612
MmeI TCCRAC 1 cut(s) 126
MnlI CCTC 8 cut(s) 70, 139, 142, 292, 348, 624, 843, 1183
Mox20I TGGCCA 2 cut(s) 5, 762
MroXI GAANNNNTTC 2 cut(s) 501, 1036
MscI TGGCCA 2 cut(s) 5, 762
MseI TTAA 4 cut(s) 383, 434, 912, 1073
MslI CAYNNNNRTG 4 cut(s) 477, 708, 768, 912
Msp20I TGGCCA 2 cut(s) 5, 762
MspA1I CMGCKG 1 cut(s) 1287
MspI CCGG 1 cut(s) 225
MspR9I CCNGG 4 cut(s) 226, 278, 531, 1022
Mva1269I GAATGC 1 cut(s) 1057
MvaI CCWGG 3 cut(s) 278, 531, 1022
MvnI CGCG 1 cut(s) 1180
MwoI GCNNNNNNNGC 5 cut(s) 328, 347, 811, 1017, 1244
NciI CCSGG 1 cut(s) 226
NdeI CATATG 1 cut(s) 1234
NdeII GATC 6 cut(s) 313, 450, 589, 621, 992, 1152
NlaIII CATG 5 cut(s) 404, 451, 581, 656, 687
NlaIV GGNNCC 2 cut(s) 905, 1171
NmeAIII GCCGAG 2 cut(s) 205, 331
NmuCI GTSAC 1 cut(s) 754
PcsI WCGNNNNNNNCGW 1 cut(s) 592
PctI GAATGC 1 cut(s) 1057
PdmI GAANNNNTTC 2 cut(s) 501, 1036
PfeI GAWTC 1 cut(s) 1138
PleI GAGTC 3 cut(s) 20, 370, 611
PmaCI CACGTG 1 cut(s) 253
PmlI CACGTG 1 cut(s) 253
PpsI GAGTC 3 cut(s) 20, 370, 611
Ppu21I YACGTR 1 cut(s) 253
PshBI ATTAAT 1 cut(s) 434
Psp6I CCWGG 3 cut(s) 276, 529, 1020
PspCI CACGTG 1 cut(s) 253
PspFI CCCAGC 1 cut(s) 1215
PspGI CCWGG 3 cut(s) 276, 529, 1020
PspN4I GGNNCC 2 cut(s) 905, 1171
PspPI GGNCC 3 cut(s) 611, 734, 1170
PsuI RGATCY 1 cut(s) 992
PvuII CAGCTG 1 cut(s) 1287
RsaI GTAC 2 cut(s) 535, 795
RsaNI GTAC 2 cut(s) 534, 794
RseI CAYNNNNRTG 4 cut(s) 477, 708, 768, 912
SaqAI TTAA 4 cut(s) 383, 434, 912, 1073
Sau3AI GATC 6 cut(s) 313, 450, 589, 621, 992, 1152
Sau96I GGNCC 3 cut(s) 611, 734, 1170
SchI GAGTC 3 cut(s) 20, 370, 612
ScrFI CCNGG 4 cut(s) 226, 278, 531, 1022
SfaNI GCATC 1 cut(s) 166
SfcI CTRYAG 1 cut(s) 942
SinI GGWCC 2 cut(s) 611, 734
SmiMI CAYNNNNRTG 4 cut(s) 477, 708, 768, 912
SmlI CTYRAG 3 cut(s) 806, 891, 996
SmoI CTYRAG 3 cut(s) 806, 891, 996
SpeI ACTAGT 1 cut(s) 980
Sse9I AATT 6 cut(s) 109, 294, 435, 647, 739, 831
SsiI CCGC 5 cut(s) 287, 303, 339, 1011, 1161
SspMI CTAG 5 cut(s) 168, 351, 506, 627, 981
StyD4I CCNGG 4 cut(s) 224, 276, 529, 1020
StyI CCWWGG 1 cut(s) 323
TaaI ACNGT 3 cut(s) 232, 1079, 1299
TaiI ACGT 2 cut(s) 56, 255
TaqI TCGA 2 cut(s) 234, 316
TasI AATT 6 cut(s) 109, 294, 435, 647, 739, 831
TauI GCSGC 3 cut(s) 289, 305, 341
TfiI GAWTC 1 cut(s) 1138
Tru1I TTAA 4 cut(s) 383, 434, 912, 1073
Tru9I TTAA 4 cut(s) 383, 434, 912, 1073
TscAI CASTG 2 cut(s) 763, 770
TseFI GTSAC 1 cut(s) 754
Tsp45I GTSAC 1 cut(s) 754
TspDTI ATGAA 3 cut(s) 380, 989, 1051
TspRI CASTG 2 cut(s) 763, 770
VpaK11BI GGWCC 2 cut(s) 611, 734
VspI ATTAAT 1 cut(s) 434
XapI RAATTY 3 cut(s) 109, 739, 831
XmnI GAANNNNTTC 2 cut(s) 501, 1036
XspI CTAG 5 cut(s) 168, 351, 506, 627, 981
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.