Basic Information

Type: gene

Biological Identity

Species

fragaria_vesca

Chromosome

Fvb6

Orthogroup ID

OG0007599

Physical Location & Seq

Genomic Coordinates Reverse (-)

14730376 .. 14730914

Gene Structure 539 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

FvH4_6g21150.t1

Sequence Viewer

CDS Protein Promoter (2k)

Length: 390 bp

ATGACTACGGCGGCCAGAGACCGAACCTGCGACGCGTCGTCTTCCTCCCTCTCATTATTCGCCGCCTCGTCGTCCTCCTCCACTTCATCCTCCTCCCCGATTGTCATATCCGACCCGCTCGCTTTTGACCCGAACCCGCACCACGCCTTCGGCAGCAGGGCCTCCGGGAGCTTCCAGAACGAGGGCCTCCTGGCGGACAACAGTGGTGGCGGCGGCGGAGAGGCGGAGTTCGGATTCTTGAGAGCTGAGTTCTGGACGAGTCAACTAGCCGAGACCGTGGAGTTTTACGAGAGGCATGTGTTTTTGTGCTACAAGAACCCAACGGTGTGGCCGCCGAGGATCGAGGCGGCAGAGTTTGATCGGCTGCCAAGGTTGTTGTATGAGGGGTGA

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

No ontology terms assigned.

KEGG Pathways

Metabolic & Signaling

No pathways identified.

Pfam Domains

Protein Families

Suc_Fer-like

Protein Analysis

130

Amino Acids

13.95

Weight (kDa)

4.78

Isoelectric Point (pI)

43.14

Instability Index

Protein Domains (Pfam)

No Pfam domains detected for this protein.

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

Style Settings

Font Size (px)

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Align Labels (Cladogram)

Image

Tree File

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Publication-ready

iTOL Interactive Tree Of Life · Most popular EvolView Flexible annotations MEGA Desktop phylogenetics suite FigTree Desktop tree editor

Orthologous Genes (Group: OG0007599)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT4G26620 AT5G55900 AT5G55900
fragaria_vesca	FvH4_2g11400 FvH4_3g42740 FvH4_3g42740 FvH4_6g21150
malus_domestica	MD03G1029300.v1.1 MD11G1032600.v1.1
prunus_persica	Prupe.6G025400_v2.0.a1 Prupe.6G025400_v2.0.a1 Prupe.6G025400_v2.0.a1
pyrus_communis	pycom03g02420 pycom11g02820
rosa_chinensis	RchiOBHm_Chr5g0076471
rosa_laevigata	RLG00000036622
rosa_multiflora	Rmu_ssc0000184.1_g000039
rosa_roxburghii	Rroxscaffold_1G00005430
rosa_rugosa	Rorug05G0448400
rosa_samantha	Rh5AG503100 Rh5BG524800 Rh5CG548400 Rh5DG536600
rosa_wichuraiana	Rw5G046660

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
Acc36I	ACCTGC	1 cut(s)	35
AccBSI	CCGCTC	1 cut(s)	118
AccII	CGCG	1 cut(s)	35
AclWI	GGATC	1 cut(s)	347
AcoI	YGGCCR	2 cut(s)	12, 329
AfiI	CCNNNNNNNGG	2 cut(s)	181, 193
AflIII	ACRYGT	1 cut(s)	33
AhdI	GACNNNNNGTC	1 cut(s)	37
AjnI	CCWGG	1 cut(s)	189
AluBI	AGCT	2 cut(s)	171, 245
AluI	AGCT	2 cut(s)	171, 245
Alw26I	GTCTC	2 cut(s)	12, 266
AlwI	GGATC	1 cut(s)	347
AoxI	GGCC	4 cut(s)	12, 159, 184, 329
ApeKI	GCWGC	2 cut(s)	153, 364
AspS9I	GGNCC	2 cut(s)	159, 184
AsuC2I	CCSGG	1 cut(s)	166
BbsI	GAAGAC	1 cut(s)	33
BbvI	GCAGC	2 cut(s)	165, 351
BceAI	ACGGC	1 cut(s)	24
BciT130I	CCWGG	1 cut(s)	191
BcnI	CCSGG	1 cut(s)	166
BcoDI	GTCTC	2 cut(s)	12, 266
BfaI	CTAG	1 cut(s)	266
BfuAI	ACCTGC	1 cut(s)	35
BisI	GCNGC	8 cut(s)	12, 63, 154, 211, 214, 332, 348, 365
BlsI	GCNGC	8 cut(s)	13, 64, 155, 212, 215, 333, 349, 366
Bme1390I	CCNGG	2 cut(s)	166, 191
BmeRI	GACNNNNNGTC	1 cut(s)	37
BmgT120I	GGNCC	2 cut(s)	159, 184
BmrFI	CCNGG	2 cut(s)	166, 191
BpiI	GAAGAC	1 cut(s)	33
BpuEI	CTTGAG	1 cut(s)	259
BpuMI	CCSGG	1 cut(s)	166
BsaI	GGTCTC	2 cut(s)	12, 266
BsaJI	CCNNGG	3 cut(s)	276, 335, 368
Bsc4I	CCNNNNNNNGG	2 cut(s)	181, 193
BseBI	CCWGG	1 cut(s)	191
BseDI	CCNNGG	3 cut(s)	276, 335, 368
BseGI	GGATG	1 cut(s)	86
BseLI	CCNNNNNNNGG	2 cut(s)	181, 193
BseMII	CTCAG	1 cut(s)	237
BseRI	GAGGAG	2 cut(s)	67, 82
BseXI	GCAGC	2 cut(s)	165, 351
Bsh1236I	CGCG	1 cut(s)	35
BshFI	GGCC	4 cut(s)	14, 161, 186, 331
BsiSI	CCGG	1 cut(s)	165
BslI	CCNNNNNNNGG	2 cut(s)	181, 193
BsmAI	GTCTC	2 cut(s)	12, 266
BsnI	GGCC	4 cut(s)	14, 161, 186, 331
Bso31I	GGTCTC	2 cut(s)	12, 266
Bsp143I	GATC	2 cut(s)	339, 358
BspANI	GGCC	4 cut(s)	14, 161, 186, 331
BspCNI	CTCAG	1 cut(s)	238
BspFNI	CGCG	1 cut(s)	35
BspMI	ACCTGC	1 cut(s)	35
BspPI	GGATC	1 cut(s)	347
BspTNI	GGTCTC	2 cut(s)	12, 266
BsrBI	CCGCTC	1 cut(s)	118
BssECI	CCNNGG	3 cut(s)	276, 335, 368
BssMI	GATC	2 cut(s)	339, 358
BssT1I	CCWWGG	1 cut(s)	368
Bst2UI	CCWGG	1 cut(s)	191
Bst4CI	ACNGT	3 cut(s)	203, 277, 325
BstC8I	GCNNGC	1 cut(s)	120
BstDEI	CTNAG	1 cut(s)	246
BstDSI	CCRYGG	1 cut(s)	276
BstF5I	GGATG	1 cut(s)	86
BstFNI	CGCG	1 cut(s)	35
BstKTI	GATC	2 cut(s)	342, 361
BstMAI	GTCTC	2 cut(s)	12, 266
BstMBI	GATC	2 cut(s)	339, 358
BstNI	CCWGG	1 cut(s)	191
BstNSI	RCATGY	1 cut(s)	299
BstSCI	CCNGG	2 cut(s)	164, 189
BstUI	CGCG	1 cut(s)	35
BstV1I	GCAGC	2 cut(s)	165, 351
BstV2I	GAAGAC	1 cut(s)	33
BstXI	CCANNNNNNTGG	1 cut(s)	327
BsuRI	GGCC	4 cut(s)	14, 161, 186, 331
BtgI	CCRYGG	1 cut(s)	276
BtsCI	GGATG	1 cut(s)	86
BtsIMutI	CAGTG	1 cut(s)	208
BveI	ACCTGC	1 cut(s)	35
Cac8I	GCNNGC	1 cut(s)	120
Cfr13I	GGNCC	2 cut(s)	159, 184
CseI	GACGC	2 cut(s)	24, 41
CspCI	CAANNNNNGTGG	2 cut(s)	187, 222
CviAII	CATG	1 cut(s)	296
CviJI	RGCY	8 cut(s)	14, 161, 171, 186, 245, 269, 331, 364
CviKI_1	RGCY	8 cut(s)	14, 161, 171, 186, 245, 269, 331, 364
DdeI	CTNAG	1 cut(s)	246
DpnI	GATC	2 cut(s)	341, 360
DpnII	GATC	2 cut(s)	339, 358
DriI	GACNNNNNGTC	1 cut(s)	37
EaeI	YGGCCR	2 cut(s)	12, 329
Eam1105I	GACNNNNNGTC	1 cut(s)	37
EciI	GGCGGA	3 cut(s)	209, 231, 239
Eco130I	CCWWGG	1 cut(s)	368
Eco31I	GGTCTC	2 cut(s)	12, 266
EcoO109I	RGGNCCY	2 cut(s)	159, 184
EcoRII	CCWGG	1 cut(s)	189
EcoT14I	CCWWGG	1 cut(s)	368
ErhI	CCWWGG	1 cut(s)	368
FaeI	CATG	1 cut(s)	299
FaiI	YATR	3 cut(s)	107, 297, 381
FatI	CATG	1 cut(s)	295
FauI	CCCGC	2 cut(s)	123, 144
Fnu4HI	GCNGC	8 cut(s)	12, 63, 154, 211, 214, 332, 348, 365
FokI	GGATG	1 cut(s)	73
Fsp4HI	GCNGC	8 cut(s)	12, 63, 154, 211, 214, 332, 348, 365
FspBI	CTAG	1 cut(s)	266
GluI	GCNGC	8 cut(s)	12, 63, 154, 211, 214, 332, 348, 365
HaeIII	GGCC	4 cut(s)	14, 161, 186, 331
HapII	CCGG	1 cut(s)	165
HgaI	GACGC	2 cut(s)	24, 41
Hin1II	CATG	1 cut(s)	299
HincII	GTYRAC	1 cut(s)	263
HindII	GTYRAC	1 cut(s)	263
HinfI	GANTC	2 cut(s)	234, 259
HpaII	CCGG	1 cut(s)	165
Hpy166II	GTNNAC	1 cut(s)	263
Hpy188I	TCNGA	2 cut(s)	112, 233
Hpy188III	TCNNGA	3 cut(s)	175, 238, 253
Hpy8I	GTNNAC	1 cut(s)	263
Hpy99I	CGWCG	3 cut(s)	35, 40, 73
HpyAV	CCTTC	1 cut(s)	157
HpyCH4III	ACNGT	3 cut(s)	203, 277, 325
HpyF3I	CTNAG	1 cut(s)	246
Hsp92II	CATG	1 cut(s)	299
Kzo9I	GATC	2 cut(s)	339, 358
LmnI	GCTCC	1 cut(s)	168
LpnPI	CCDG	8 cut(s)	28, 40, 142, 176, 178, 188, 203, 238
Lsp1109I	GCAGC	2 cut(s)	165, 351
MaeI	CTAG	1 cut(s)	266
MalI	GATC	2 cut(s)	341, 360
MbiI	CCGCTC	1 cut(s)	118
MboI	GATC	2 cut(s)	339, 358
MboII	GAAGA	1 cut(s)	33
MluI	ACGCGT	1 cut(s)	33
MlyI	GAGTC	1 cut(s)	268
MmeI	TCCRAC	1 cut(s)	135
MspI	CCGG	1 cut(s)	165
MspR9I	CCNGG	2 cut(s)	166, 191
MvaI	CCWGG	1 cut(s)	191
MvnI	CGCG	1 cut(s)	35
NciI	CCSGG	1 cut(s)	166
NdeII	GATC	2 cut(s)	339, 358
NlaIII	CATG	1 cut(s)	299
NmeAIII	GCCGAG	2 cut(s)	295, 360
NspI	RCATGY	1 cut(s)	299
PfeI	GAWTC	1 cut(s)	234
PfoI	TCCNGGA	1 cut(s)	164
PkrI	GCNGC	8 cut(s)	13, 64, 155, 212, 215, 333, 349, 366
PleI	GAGTC	1 cut(s)	267
PpsI	GAGTC	1 cut(s)	267
Psp6I	CCWGG	1 cut(s)	189
PspGI	CCWGG	1 cut(s)	189
PspPI	GGNCC	2 cut(s)	159, 184
SatI	GCNGC	8 cut(s)	12, 63, 154, 211, 214, 332, 348, 365
Sau3AI	GATC	2 cut(s)	339, 358
Sau96I	GGNCC	2 cut(s)	159, 184
SchI	GAGTC	1 cut(s)	268
ScrFI	CCNGG	2 cut(s)	166, 191
SetI	ASST	4 cut(s)	29, 173, 247, 374
SmlI	CTYRAG	1 cut(s)	238
SmoI	CTYRAG	1 cut(s)	238
SspMI	CTAG	1 cut(s)	266
StyD4I	CCNGG	2 cut(s)	164, 189
StyI	CCWWGG	1 cut(s)	368
TaaI	ACNGT	3 cut(s)	203, 277, 325
TaqI	TCGA	1 cut(s)	342
TaqII	GACCGA	1 cut(s)	36
TauI	GCSGC	6 cut(s)	14, 65, 213, 216, 334, 350
TfiI	GAWTC	1 cut(s)	234
TscAI	CASTG	1 cut(s)	208
TseI	GCWGC	2 cut(s)	153, 364
TspDTI	ATGAA	1 cut(s)	75
TspRI	CASTG	1 cut(s)	208
XceI	RCATGY	1 cut(s)	299
XspI	CTAG	1 cut(s)	266

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.