RLG00000036622

Sucrase/ferredoxin-like

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
rosa_laevigata
Chr7
OG0007599
Physical Location & Seq
Reverse (-)
82612601 .. 82615706
3106 bp
Loading structure...
UTR
Exon/CDS
Intron
RLM00000036622

Sequence Viewer

Length: 1320 bp
ATGGCTAGCGCCCGAGACCGAGACGAGTCCTTGCTCCCATTTACGACGCCCCCGTCCACGTCGTCTTCCCCGATTGTGATATCCGACCCGCTCGACGGGTTCCTCTCCGACCCGAATTCCCACATCGGGACCAGCGCCTCCGGGAGCTTCCAGAACGAGGGTTTGTTGGCAGATACTAGCGCGAGCAGCAGCGACGCCGAGTTTGGGTTTTCGAGGGCCGAGTTCCGGACGAGTCAACTCGCCGGGACGGTGGAGTTTTATCAGAGGCATGTGTTTTTGTGCTATAAGAACCCGCAGGTGTGGCCGCCGAGGATTGAGGCGGCGGAGTTTGATCGGCTGCCGAGGCTGCTCCACGCGGCGGTGATGGCGAGGAGGGTGGATATGAGGAAAGAGACTCGGTTAACAATATGTGAAGGGCACGATGGAACTGAGACTTCAAATGGTGATATATTAATTTTCCCCGACATGATCAGATACAGGAGATTGACACATTTTGATGTTGACACATTCGTTGAAGAAGTTCTTGTGAAGGATGGTGAGTGGCTGCCTGGAACTCCTGAAACTCTGAGGGGTTCATACATATTTGTATGTTCTCATGGGTCCAGGGATCGCCGTTGTGGAGTCTGTGGGCCTCCCTTGATCAATAGATTCAGAGAAGAGATAGATTTGCGTGGTCTACAAGGTAAAGTGTCTGTTAGGCCATGTTCACACATTGGGGGGCATAAGTATGCAGGAAATGTAATTATATTTGGATCAAATATCAACAAAGAAGTCACTGGCCACTGGTATGGATATGTTGCTCCAGAAGATGTACCTCAATTGCTTGAGCAGCATATTGGGAGAGGAGAAATTGTAGACTGGCTGTGGAGGGGTCAAATGGGTTTATCAGAAGAACAACAGAAGAAATCTCAAGAACTAAGGCTCCAGCCTAATGGCGAGTCAAAAGTGGAGAAAAGCAGTACAGAGCTGACAAAAACGAAGGAAAGGGGGATGAATACTGGTCCATGCAGATCTCAAGTTGAAATTGGGGGCTGTGGCCAGGAAAACGGAAGCTCTTCTTGCTGCCAGAACACTTCGTTAACAGATAGGATAAGTAGTCCCGATTTGAATATGATGGCAGCACAAGCGACATCTGAAAAGAAAAAGAGCAGTAGAAAACTACTTTCACGCAGAAGCAAAGCTGCATCTGCTCGAAAGTTTTGTGCTATGCCAACATGGTCTGAGAGTTGGGAGCGGGAAGATACATATGCAGCTTTGGCTATTGTTTGTGCTGCTGTGTCGGTTGGTGTTGCTTACAGTTGCTACAAACAGTTGAGATGA
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
No ontology terms assigned.
KEGG Pathways
Metabolic & Signaling
No pathways identified.
Pfam Domains
Protein Families
Suc_Fer-like

Protein Analysis

440

Amino Acids

48.78

Weight (kDa)

6.8

Isoelectric Point (pI)

49.11

Instability Index
Protein Domains (Pfam)
Domain Name Pfam ID Position E-value Description
Suc_Fer-like PF06999 80 - 291 8.7e-46 Sucrase/ferredoxin-like
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
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Publication-ready
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Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AarI CACCTGC 1 cut(s) 286
AasI GACNNNNNNGTC 1 cut(s) 52
Acc36I ACCTGC 1 cut(s) 286
AccBSI CCGCTC 2 cut(s) 91, 1234
AccI GTMKAC 2 cut(s) 676, 855
AccII CGCG 2 cut(s) 182, 356
AccIII TCCGGA 1 cut(s) 225
AciI CCGC 8 cut(s) 89, 293, 305, 320, 323, 356, 359, 1234
AclWI GGATC 2 cut(s) 615, 760
AcoI YGGCCR 3 cut(s) 302, 778, 1036
AcsI RAATTY 1 cut(s) 115
AcyI GRCGYC 2 cut(s) 47, 195
AfaI GTAC 2 cut(s) 813, 961
AfiI CCNNNNNNNGG 6 cut(s) 95, 126, 157, 204, 225, 358
AgsI TTSAA 4 cut(s) 438, 515, 1022, 1108
AjiI CACGTC 1 cut(s) 60
AjnI CCWGG 3 cut(s) 547, 602, 1038
AloI GAACNNNNNNTCC 2 cut(s) 906, 938
AluBI AGCT 5 cut(s) 147, 967, 1053, 1181, 1253
AluI AGCT 5 cut(s) 147, 967, 1053, 1181, 1253
Alw26I GTCTC 4 cut(s) 9, 15, 386, 425
AlwI GGATC 2 cut(s) 615, 760
Ama87I CYCGRG 1 cut(s) 12
Aor13HI TCCGGA 1 cut(s) 225
AoxI GGCC 6 cut(s) 216, 302, 629, 698, 778, 1036
ApoI RAATTY 1 cut(s) 115
ArsI GACNNNNNNTTYG 2 cut(s) 185, 217
AseI ATTAAT 1 cut(s) 452
Asp700I GAANNNNTTC 2 cut(s) 519, 1054
AspLEI GCGC 3 cut(s) 11, 137, 182
AspS9I GGNCC 5 cut(s) 129, 216, 600, 629, 1001
AsuC2I CCSGG 2 cut(s) 142, 244
AsuHPI GGTGA 3 cut(s) 373, 455, 548
AsuNHI GCTAGC 1 cut(s) 5
AvaI CYCGRG 1 cut(s) 12
AvaII GGWCC 3 cut(s) 129, 600, 1001
BaeGI GKGCMC 1 cut(s) 420
BalI TGGCCA 2 cut(s) 780, 1038
BbsI GAAGAC 1 cut(s) 57
BccI CCATC 4 cut(s) 358, 416, 527, 1108
BceAI ACGGC 1 cut(s) 597
BciT130I CCWGG 3 cut(s) 549, 604, 1040
BclI TGATCA 2 cut(s) 468, 639
BcnI CCSGG 2 cut(s) 142, 244
BcoDI GTCTC 4 cut(s) 9, 15, 386, 425
BfaI CTAG 2 cut(s) 6, 177
BfoI RGCGCY 2 cut(s) 12, 138
BfuAI ACCTGC 1 cut(s) 286
BglII AGATCT 1 cut(s) 1010
Bme1390I CCNGG 5 cut(s) 142, 244, 549, 604, 1040
Bme18I GGWCC 3 cut(s) 129, 600, 1001
BmeT110I CYCGRG 1 cut(s) 12
BmgBI CACGTC 1 cut(s) 60
BmgT120I GGNCC 5 cut(s) 129, 216, 600, 629, 1001
BmiI GGNNCC 4 cut(s) 101, 130, 601, 923
BmrFI CCNGG 5 cut(s) 142, 244, 549, 604, 1040
BmsI GCATC 1 cut(s) 1193
BmtI GCTAGC 1 cut(s) 9
BpiI GAAGAC 1 cut(s) 57
BpmI CTGGAG 2 cut(s) 786, 908
BpuEI CTTGAG 3 cut(s) 845, 894, 999
BpuMI CCSGG 2 cut(s) 142, 244
BsaHI GRCGYC 2 cut(s) 47, 195
BsaI GGTCTC 1 cut(s) 9
BsaJI CCNNGG 3 cut(s) 308, 341, 603
BsaWI WCCGGW 1 cut(s) 225
BsaXI ACNNNNNCTCC 4 cut(s) 837, 867, 906, 936
Bsc4I CCNNNNNNNGG 6 cut(s) 95, 126, 157, 204, 225, 358
Bse1I ACTGG 4 cut(s) 781, 788, 863, 1003
BseAI TCCGGA 1 cut(s) 225
BseBI CCWGG 3 cut(s) 549, 604, 1040
BseDI CCNNGG 3 cut(s) 308, 341, 603
BseGI GGATG 2 cut(s) 538, 996
BseLI CCNNNNNNNGG 6 cut(s) 95, 126, 157, 204, 225, 358
BseMII CTCAG 3 cut(s) 420, 557, 1212
BseNI ACTGG 4 cut(s) 781, 788, 863, 1003
BseRI GAGGAG 2 cut(s) 385, 858
BseSI GKGCMC 1 cut(s) 420
Bsh1236I CGCG 2 cut(s) 182, 356
BshFI GGCC 6 cut(s) 218, 304, 631, 700, 780, 1038
BsiHKCI CYCGRG 1 cut(s) 12
BsiSI CCGG 3 cut(s) 141, 226, 243
BslFI GGGAC 3 cut(s) 142, 259, 1083
BslI CCNNNNNNNGG 6 cut(s) 95, 126, 157, 204, 225, 358
BsmAI GTCTC 4 cut(s) 9, 15, 386, 425
BsmBI CGTCTC 1 cut(s) 15
BsmFI GGGAC 3 cut(s) 142, 259, 1083
BsnI GGCC 6 cut(s) 218, 304, 631, 700, 780, 1038
Bso31I GGTCTC 1 cut(s) 9
BsoBI CYCGRG 1 cut(s) 12
Bsp1286I GDGCHC 1 cut(s) 420
Bsp13I TCCGGA 1 cut(s) 225
Bsp143I GATC 6 cut(s) 331, 468, 607, 639, 752, 1010
BspACI CCGC 8 cut(s) 89, 293, 305, 320, 323, 356, 359, 1234
BspANI GGCC 6 cut(s) 218, 304, 631, 700, 780, 1038
BspCNI CTCAG 3 cut(s) 421, 558, 1213
BspEI TCCGGA 1 cut(s) 225
BspFNI CGCG 2 cut(s) 182, 356
BspLI GGNNCC 4 cut(s) 101, 130, 601, 923
BspMI ACCTGC 1 cut(s) 286
BspOI GCTAGC 1 cut(s) 9
BspPI GGATC 2 cut(s) 615, 760
BspQI GCTCTTC 1 cut(s) 1060
BspTNI GGTCTC 1 cut(s) 9
BsrBI CCGCTC 2 cut(s) 91, 1234
BsrI ACTGG 4 cut(s) 781, 788, 863, 1003
BssECI CCNNGG 3 cut(s) 308, 341, 603
BssMI GATC 6 cut(s) 331, 468, 607, 639, 752, 1010
BssNI GRCGYC 2 cut(s) 47, 195
Bst2UI CCWGG 3 cut(s) 549, 604, 1040
Bst4CI ACNGT 3 cut(s) 250, 1298, 1311
Bst6I CTCTTC 2 cut(s) 651, 1060
BstACI GRCGYC 2 cut(s) 47, 195
BstC8I GCNNGC 2 cut(s) 7, 184
BstDEI CTNAG 4 cut(s) 429, 566, 917, 1221
BstF5I GGATG 2 cut(s) 538, 996
BstFNI CGCG 2 cut(s) 182, 356
BstH2I RGCGCY 2 cut(s) 12, 138
BstHHI GCGC 3 cut(s) 11, 137, 182
BstKTI GATC 6 cut(s) 334, 471, 610, 642, 755, 1013
BstMAI GTCTC 4 cut(s) 9, 15, 386, 425
BstMBI GATC 6 cut(s) 331, 468, 607, 639, 752, 1010
BstNI CCWGG 3 cut(s) 549, 604, 1040
BstNSI RCATGY 1 cut(s) 272
BstSCI CCNGG 5 cut(s) 140, 242, 547, 602, 1038
BstSLI GKGCMC 1 cut(s) 420
BstUI CGCG 2 cut(s) 182, 356
BstV2I GAAGAC 1 cut(s) 57
BstX2I RGATCY 1 cut(s) 1010
BstXI CCANNNNNNTGG 2 cut(s) 788, 932
BstYI RGATCY 1 cut(s) 1010
BsuRI GGCC 6 cut(s) 218, 304, 631, 700, 780, 1038
BtrI CACGTC 1 cut(s) 60
BtsCI GGATG 2 cut(s) 538, 996
BtsIMutI CAGTG 2 cut(s) 774, 781
BveI ACCTGC 1 cut(s) 286
Cac8I GCNNGC 2 cut(s) 7, 184
CfoI GCGC 3 cut(s) 11, 137, 182
Cfr13I GGNCC 5 cut(s) 129, 216, 600, 629, 1001
CseI GACGC 2 cut(s) 55, 203
Csp6I GTAC 2 cut(s) 812, 960
CviAII CATG 6 cut(s) 269, 466, 596, 702, 1005, 1215
CviQI GTAC 2 cut(s) 812, 960
DdeI CTNAG 4 cut(s) 429, 566, 917, 1221
DpnI GATC 6 cut(s) 333, 470, 609, 641, 754, 1012
DpnII GATC 6 cut(s) 331, 468, 607, 639, 752, 1010
DrdI GACNNNNNNGTC 1 cut(s) 52
DseDI GACNNNNNNGTC 1 cut(s) 52
EaeI YGGCCR 3 cut(s) 302, 778, 1036
Eam1104I CTCTTC 2 cut(s) 651, 1060
EarI CTCTTC 2 cut(s) 651, 1060
EciI GGCGGA 1 cut(s) 338
Eco31I GGTCTC 1 cut(s) 9
Eco32I GATATC 1 cut(s) 81
Eco47I GGWCC 3 cut(s) 129, 600, 1001
Eco88I CYCGRG 1 cut(s) 12
EcoRI GAATTC 1 cut(s) 115
EcoRII CCWGG 3 cut(s) 547, 602, 1038
EcoRV GATATC 1 cut(s) 81
Esp3I CGTCTC 1 cut(s) 15
FaeI CATG 6 cut(s) 272, 469, 599, 705, 1008, 1218
FalI AAGNNNNNCTT 4 cut(s) 507, 539, 1042, 1074
FaqI GGGAC 3 cut(s) 142, 259, 1083
FatI CATG 6 cut(s) 268, 465, 595, 701, 1004, 1214
FauI CCCGC 3 cut(s) 96, 300, 1227
FauNDI CATATG 1 cut(s) 1246
FbaI TGATCA 2 cut(s) 468, 639
FblI GTMKAC 2 cut(s) 676, 855
FokI GGATG 2 cut(s) 545, 1003
FspBI CTAG 2 cut(s) 6, 177
GlaI GCGC 3 cut(s) 10, 136, 181
GsuI CTGGAG 2 cut(s) 786, 908
HaeII RGCGCY 2 cut(s) 12, 138
HaeIII GGCC 6 cut(s) 218, 304, 631, 700, 780, 1038
HapII CCGG 3 cut(s) 141, 226, 243
HgaI GACGC 2 cut(s) 55, 203
HhaI GCGC 3 cut(s) 11, 137, 182
Hin1I GRCGYC 2 cut(s) 47, 195
Hin1II CATG 6 cut(s) 272, 469, 599, 705, 1008, 1218
Hin6I GCGC 3 cut(s) 9, 135, 180
HinP1I GCGC 3 cut(s) 9, 135, 180
HincII GTYRAC 4 cut(s) 236, 402, 502, 1080
HindII GTYRAC 4 cut(s) 236, 402, 502, 1080
HinfI GANTC 6 cut(s) 26, 232, 394, 621, 648, 938
HpaI GTTAAC 2 cut(s) 402, 1080
HpaII CCGG 3 cut(s) 141, 226, 243
HphI GGTGA 3 cut(s) 373, 455, 548
Hpy166II GTNNAC 8 cut(s) 57, 236, 402, 502, 677, 707, 856, 1080
Hpy188I TCNGA 9 cut(s) 85, 109, 264, 473, 567, 653, 889, 1135, 1222
Hpy188III TCNNGA 7 cut(s) 127, 151, 226, 557, 803, 911, 1100
Hpy8I GTNNAC 8 cut(s) 57, 236, 402, 502, 677, 707, 856, 1080
Hpy99I CGWCG 4 cut(s) 49, 64, 98, 197
HpyAV CCTTC 3 cut(s) 407, 523, 973
HpyCH4III ACNGT 3 cut(s) 250, 1298, 1311
HpyCH4IV ACGT 1 cut(s) 59
HpyCH4V TGCA 4 cut(s) 731, 1008, 1184, 1250
HpyF3I CTNAG 4 cut(s) 429, 566, 917, 1221
HpySE526I ACGT 1 cut(s) 59
Hsp92I GRCGYC 2 cut(s) 47, 195
Hsp92II CATG 6 cut(s) 272, 469, 599, 705, 1008, 1218
HspAI GCGC 3 cut(s) 9, 135, 180
Kpn2I TCCGGA 1 cut(s) 225
Ksp22I TGATCA 2 cut(s) 468, 639
KspAI GTTAAC 2 cut(s) 402, 1080
Kzo9I GATC 6 cut(s) 331, 468, 607, 639, 752, 1010
LguI GCTCTTC 1 cut(s) 1060
LmnI GCTCC 6 cut(s) 39, 144, 354, 805, 927, 1231
LweI GCATC 1 cut(s) 1193
MaeI CTAG 2 cut(s) 6, 177
MaeII ACGT 1 cut(s) 59
MaeIII GTNAC 1 cut(s) 772
MalI GATC 6 cut(s) 333, 470, 609, 641, 754, 1012
MbiI CCGCTC 2 cut(s) 91, 1234
MboI GATC 6 cut(s) 331, 468, 607, 639, 752, 1010
MboII GAAGA 8 cut(s) 57, 527, 668, 818, 902, 913, 1047, 1250
MfeI CAATTG 1 cut(s) 818
MflI RGATCY 1 cut(s) 1010
MhlI GDGCHC 1 cut(s) 420
MlsI TGGCCA 2 cut(s) 780, 1038
MluCI AATT 6 cut(s) 115, 453, 741, 818, 849, 1023
MluNI TGGCCA 2 cut(s) 780, 1038
MlyI GAGTC 5 cut(s) 35, 241, 388, 630, 947
MmeI TCCRAC 2 cut(s) 108, 132
Mox20I TGGCCA 2 cut(s) 780, 1038
MroI TCCGGA 1 cut(s) 225
MroXI GAANNNNTTC 2 cut(s) 519, 1054
MscI TGGCCA 2 cut(s) 780, 1038
MseI TTAA 3 cut(s) 401, 452, 1079
MslI CAYNNNNRTG 3 cut(s) 495, 726, 786
Msp20I TGGCCA 2 cut(s) 780, 1038
MspI CCGG 3 cut(s) 141, 226, 243
MspR9I CCNGG 5 cut(s) 142, 244, 549, 604, 1040
MunI CAATTG 1 cut(s) 818
MvaI CCWGG 3 cut(s) 549, 604, 1040
MvnI CGCG 2 cut(s) 182, 356
NciI CCSGG 2 cut(s) 142, 244
NdeI CATATG 1 cut(s) 1246
NdeII GATC 6 cut(s) 331, 468, 607, 639, 752, 1010
NheI GCTAGC 1 cut(s) 5
NlaIII CATG 6 cut(s) 272, 469, 599, 705, 1008, 1218
NlaIV GGNNCC 4 cut(s) 101, 130, 601, 923
NmeAIII GCCGAG 4 cut(s) 223, 244, 333, 366
NmuCI GTSAC 1 cut(s) 772
NspI RCATGY 1 cut(s) 272
PaqCI CACCTGC 1 cut(s) 286
PciSI GCTCTTC 1 cut(s) 1060
PcsI WCGNNNNNNNCGW 2 cut(s) 50, 68
PdmI GAANNNNTTC 2 cut(s) 519, 1054
PfeI GAWTC 1 cut(s) 648
PfoI TCCNGGA 1 cut(s) 140
PleI GAGTC 5 cut(s) 34, 240, 388, 629, 946
PpsI GAGTC 5 cut(s) 34, 240, 388, 629, 946
PshBI ATTAAT 1 cut(s) 452
Psp6I CCWGG 3 cut(s) 547, 602, 1038
PspGI CCWGG 3 cut(s) 547, 602, 1038
PspN4I GGNNCC 4 cut(s) 101, 130, 601, 923
PspPI GGNCC 5 cut(s) 129, 216, 600, 629, 1001
PsuI RGATCY 1 cut(s) 1010
RsaI GTAC 2 cut(s) 813, 961
RsaNI GTAC 2 cut(s) 812, 960
RseI CAYNNNNRTG 3 cut(s) 495, 726, 786
SapI GCTCTTC 1 cut(s) 1060
SaqAI TTAA 3 cut(s) 401, 452, 1079
Sau3AI GATC 6 cut(s) 331, 468, 607, 639, 752, 1010
Sau96I GGNCC 5 cut(s) 129, 216, 600, 629, 1001
SchI GAGTC 5 cut(s) 35, 241, 388, 630, 947
ScrFI CCNGG 5 cut(s) 142, 244, 549, 604, 1040
SduI GDGCHC 1 cut(s) 420
SetI ASST 9 cut(s) 62, 149, 300, 685, 817, 969, 1055, 1183, 1255
SfaNI GCATC 1 cut(s) 1193
SinI GGWCC 3 cut(s) 129, 600, 1001
SmiMI CAYNNNNRTG 3 cut(s) 495, 726, 786
SmlI CTYRAG 3 cut(s) 824, 909, 1014
SmoI CTYRAG 3 cut(s) 824, 909, 1014
Sse9I AATT 6 cut(s) 115, 453, 741, 818, 849, 1023
SsiI CCGC 8 cut(s) 89, 293, 305, 320, 323, 356, 359, 1234
SspMI CTAG 2 cut(s) 6, 177
StyD4I CCNGG 5 cut(s) 140, 242, 547, 602, 1038
TaaI ACNGT 3 cut(s) 250, 1298, 1311
TaiI ACGT 1 cut(s) 62
TaqI TCGA 3 cut(s) 93, 212, 1192
TaqII GACCGA 1 cut(s) 33
TasI AATT 6 cut(s) 115, 453, 741, 818, 849, 1023
TatI WGTACW 1 cut(s) 959
TauI GCSGC 3 cut(s) 307, 323, 359
TfiI GAWTC 1 cut(s) 648
Tru1I TTAA 3 cut(s) 401, 452, 1079
Tru9I TTAA 3 cut(s) 401, 452, 1079
TscAI CASTG 2 cut(s) 781, 788
TseFI GTSAC 1 cut(s) 772
Tsp45I GTSAC 1 cut(s) 772
TspDTI ATGAA 2 cut(s) 564, 1007
TspGWI ACGGA 1 cut(s) 1062
TspRI CASTG 2 cut(s) 781, 788
VpaK11BI GGWCC 3 cut(s) 129, 600, 1001
VspI ATTAAT 1 cut(s) 452
XapI RAATTY 1 cut(s) 115
XceI RCATGY 1 cut(s) 272
XmiI GTMKAC 2 cut(s) 676, 855
XmnI GAANNNNTTC 2 cut(s) 519, 1054
XspI CTAG 2 cut(s) 6, 177
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.