Basic Information

Type: gene

Biological Identity

Species

arabidopsis_thaliana

Chromosome

Orthogroup ID

OG0006068

Physical Location & Seq

Genomic Coordinates Reverse (-)

13538669 .. 13539653

Gene Structure 985 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

AT4G26960.1

Sequence Viewer

CDS Protein Promoter (2k)

Length: 471 bp

ATGAATTGTTCCCCAATCGAGTCTGCTCCGTCCGGATCAAAAAGAATCCGACCCGGTAACGGGTCCCTCACAATCCTCTTCTACACCATGAAAGGAATCTCCAGATCGCCGGTGAGAAGAAACGACGGTTTCCATCGTTACATGAAACCAGGGGCTCTGGCTCAGATCCGTAACGCTAGAATCAACAACGCTAGATCCAATTTCCCCCTGACTCGTTCTCTCTCGGACCCAGTCGACCCGCCTTCATCATCTTCCGAGAGTCCTATTGCCGCGACGCCGCAGACGATAACTATGGATCAGATGCCCCATCTCTTGAGCAAGATCTACGGTCCGTATCGAATCGGTAGGAAGAAACTTGGCCCTGCGAGATCTGCGATGGTGAAATTGAACCCTTCTCCAAATTCTATACTCGAATCTATTAATGGTAACAGCAACGTACTGAACAATAATGATGTTTTAGTTGCTCATTGA

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

No ontology terms assigned.

KEGG Pathways

Metabolic & Signaling

No pathways identified.

Pfam Domains

Protein Families

No domains found.

Protein Analysis

156

Amino Acids

16.98

Weight (kDa)

10.75

Isoelectric Point (pI)

63.83

Instability Index

Protein Domains (Pfam)

No Pfam domains detected for this protein.

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

Style Settings

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Align Labels (Cladogram)

Image

Tree File

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Publication-ready

iTOL Interactive Tree Of Life · Most popular EvolView Flexible annotations MEGA Desktop phylogenetics suite FigTree Desktop tree editor

Orthologous Genes (Group: OG0006068)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT4G26960 AT5G54970
fragaria_vesca	FvH4_3g02050 FvH4_6g43180
malus_domestica	MD09G1108900.v1.1 MD17G1096900.v1.1
prunus_persica	Prupe.3G217200_v2.0.a1
pyrus_communis	pycom09g03130 pycom17g09270
rosa_chinensis	RchiOBHm_Chr2g0159281 RchiOBHm_Chr5g0002951
rosa_laevigata	RLG00000021150 RLG00000031073 RLG00000035773
rosa_multiflora	Rmu_co8060000.1_g000001 Rmu_sc0010590.1_g000004 Rmu_sc0016200.1_g000008
rosa_roxburghii	Rroxscaffold_3G00269970
rosa_rugosa	Rorug04G0400800
rosa_samantha	Rh2AG542000 Rh2BG554600 Rh2CG524700 Rh5AG023800 Rh5CG026600 Rh5DG025100
rosa_wichuraiana	Rw2G044830 Rw5G002250

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AccI	GTMKAC	1 cut(s)	234
AccII	CGCG	1 cut(s)	272
AccIII	TCCGGA	1 cut(s)	32
AciI	CCGC	3 cut(s)	239, 270, 278
AclWI	GGATC	4 cut(s)	43, 160, 189, 303
AcsI	RAATTY	1 cut(s)	400
AcyI	GRCGYC	1 cut(s)	275
AfaI	GTAC	1 cut(s)	438
AfiI	CCNNNNNNNGG	2 cut(s)	59, 60
AgsI	TTSAA	1 cut(s)	388
AjnI	CCWGG	1 cut(s)	148
AlwI	GGATC	4 cut(s)	43, 160, 189, 303
Aor13HI	TCCGGA	1 cut(s)	32
AoxI	GGCC	1 cut(s)	358
ApoI	RAATTY	1 cut(s)	400
AseI	ATTAAT	1 cut(s)	420
AspS9I	GGNCC	4 cut(s)	63, 226, 329, 359
AsuC2I	CCSGG	1 cut(s)	54
AsuHPI	GGTGA	2 cut(s)	124, 391
AvaII	GGWCC	3 cut(s)	63, 226, 329
BanII	GRGCYC	1 cut(s)	157
BccI	CCATC	3 cut(s)	141, 315, 370
BciT130I	CCWGG	1 cut(s)	150
BcnI	CCSGG	1 cut(s)	54
BfaI	CTAG	2 cut(s)	177, 192
BglII	AGATCT	2 cut(s)	321, 368
BisI	GCNGC	2 cut(s)	270, 278
BlsI	GCNGC	2 cut(s)	271, 279
Bme1390I	CCNGG	2 cut(s)	54, 150
Bme18I	GGWCC	3 cut(s)	63, 226, 329
BmgT120I	GGNCC	4 cut(s)	63, 226, 329, 359
BmiI	GGNNCC	3 cut(s)	64, 65, 228
BmrFI	CCNGG	2 cut(s)	54, 150
BmrI	ACTGGG	1 cut(s)	224
BmsI	GCATC	1 cut(s)	291
BmuI	ACTGGG	1 cut(s)	224
BpmI	CTGGAG	1 cut(s)	85
BpuEI	CTTGAG	1 cut(s)	334
BpuMI	CCSGG	1 cut(s)	54
BsaHI	GRCGYC	1 cut(s)	275
BsaJI	CCNNGG	1 cut(s)	149
BsaWI	WCCGGW	1 cut(s)	32
Bsc4I	CCNNNNNNNGG	2 cut(s)	59, 60
Bse118I	RCCGGY	1 cut(s)	109
Bse1I	ACTGG	1 cut(s)	230
BseAI	TCCGGA	1 cut(s)	32
BseBI	CCWGG	1 cut(s)	150
BseDI	CCNNGG	1 cut(s)	149
BseLI	CCNNNNNNNGG	2 cut(s)	59, 60
BseMII	CTCAG	1 cut(s)	176
BseNI	ACTGG	1 cut(s)	230
Bsh1236I	CGCG	1 cut(s)	272
BshFI	GGCC	1 cut(s)	360
BsiSI	CCGG	3 cut(s)	33, 54, 110
BslFI	GGGAC	1 cut(s)	49
BslI	CCNNNNNNNGG	2 cut(s)	59, 60
BsmFI	GGGAC	1 cut(s)	49
BsnI	GGCC	1 cut(s)	360
Bsp1286I	GDGCHC	1 cut(s)	157
Bsp13I	TCCGGA	1 cut(s)	32
Bsp143I	GATC	7 cut(s)	35, 104, 165, 194, 295, 321, 368
BspACI	CCGC	3 cut(s)	239, 270, 278
BspANI	GGCC	1 cut(s)	360
BspCNI	CTCAG	1 cut(s)	175
BspEI	TCCGGA	1 cut(s)	32
BspFNI	CGCG	1 cut(s)	272
BspLI	GGNNCC	3 cut(s)	64, 65, 228
BspPI	GGATC	4 cut(s)	43, 160, 189, 303
BsrFI	RCCGGY	1 cut(s)	109
BsrI	ACTGG	1 cut(s)	230
BssAI	RCCGGY	1 cut(s)	109
BssECI	CCNNGG	1 cut(s)	149
BssMI	GATC	7 cut(s)	35, 104, 165, 194, 295, 321, 368
BssNI	GRCGYC	1 cut(s)	275
Bst2UI	CCWGG	1 cut(s)	150
Bst4CI	ACNGT	2 cut(s)	128, 329
Bst6I	CTCTTC	1 cut(s)	83
BstACI	GRCGYC	1 cut(s)	275
BstDEI	CTNAG	1 cut(s)	162
BstFNI	CGCG	1 cut(s)	272
BstKTI	GATC	7 cut(s)	38, 107, 168, 197, 298, 324, 371
BstMBI	GATC	7 cut(s)	35, 104, 165, 194, 295, 321, 368
BstMWI	GCNNNNNNNGC	1 cut(s)	371
BstNI	CCWGG	1 cut(s)	150
BstSCI	CCNGG	2 cut(s)	52, 148
BstUI	CGCG	1 cut(s)	272
BstX2I	RGATCY	4 cut(s)	165, 194, 321, 368
BstYI	RGATCY	4 cut(s)	165, 194, 321, 368
BsuRI	GGCC	1 cut(s)	360
BtgZI	GCGATG	1 cut(s)	389
Cfr10I	RCCGGY	1 cut(s)	109
Cfr13I	GGNCC	4 cut(s)	63, 226, 329, 359
CpoI	CGGWCCG	1 cut(s)	329
CseI	GACGC	1 cut(s)	283
Csp6I	GTAC	1 cut(s)	437
CspI	CGGWCCG	1 cut(s)	329
CviAII	CATG	2 cut(s)	88, 142
CviJI	RGCY	3 cut(s)	155, 161, 360
CviKI_1	RGCY	3 cut(s)	155, 161, 360
CviQI	GTAC	1 cut(s)	437
DdeI	CTNAG	1 cut(s)	162
DpnI	GATC	7 cut(s)	37, 106, 167, 196, 297, 323, 370
DpnII	GATC	7 cut(s)	35, 104, 165, 194, 295, 321, 368
Eam1104I	CTCTTC	1 cut(s)	83
EarI	CTCTTC	1 cut(s)	83
Eco24I	GRGCYC	1 cut(s)	157
Eco47I	GGWCC	3 cut(s)	63, 226, 329
EcoO109I	RGGNCCY	1 cut(s)	63
EcoRII	CCWGG	1 cut(s)	148
EcoT38I	GRGCYC	1 cut(s)	157
FaeI	CATG	2 cut(s)	91, 145
FaiI	YATR	4 cut(s)	89, 143, 293, 407
FaqI	GGGAC	1 cut(s)	49
FatI	CATG	2 cut(s)	87, 141
FauI	CCCGC	1 cut(s)	246
FblI	GTMKAC	1 cut(s)	234
Fnu4HI	GCNGC	2 cut(s)	270, 278
FriOI	GRGCYC	1 cut(s)	157
Fsp4HI	GCNGC	2 cut(s)	270, 278
FspBI	CTAG	2 cut(s)	177, 192
GluI	GCNGC	2 cut(s)	270, 278
GsuI	CTGGAG	1 cut(s)	85
HaeIII	GGCC	1 cut(s)	360
HapII	CCGG	3 cut(s)	33, 54, 110
HgaI	GACGC	1 cut(s)	283
Hin1I	GRCGYC	1 cut(s)	275
Hin1II	CATG	2 cut(s)	91, 145
HincII	GTYRAC	1 cut(s)	235
HindII	GTYRAC	1 cut(s)	235
HinfI	GANTC	8 cut(s)	20, 45, 96, 180, 211, 259, 339, 413
HpaII	CCGG	3 cut(s)	33, 54, 110
HphI	GGTGA	2 cut(s)	124, 391
Hpy166II	GTNNAC	1 cut(s)	235
Hpy188I	TCNGA	5 cut(s)	50, 165, 226, 256, 300
Hpy188III	TCNNGA	3 cut(s)	33, 102, 313
Hpy8I	GTNNAC	1 cut(s)	235
Hpy99I	CGWCG	2 cut(s)	128, 277
HpyAV	CCTTC	2 cut(s)	252, 402
HpyCH4III	ACNGT	2 cut(s)	128, 329
HpyCH4IV	ACGT	1 cut(s)	435
HpyF10VI	GCNNNNNNNGC	1 cut(s)	371
HpyF3I	CTNAG	1 cut(s)	162
HpySE526I	ACGT	1 cut(s)	435
Hsp92I	GRCGYC	1 cut(s)	275
Hsp92II	CATG	2 cut(s)	91, 145
KflI	GGGWCCC	1 cut(s)	63
Kpn2I	TCCGGA	1 cut(s)	32
Kzo9I	GATC	7 cut(s)	35, 104, 165, 194, 295, 321, 368
LmnI	GCTCC	1 cut(s)	31
LweI	GCATC	1 cut(s)	291
MaeI	CTAG	2 cut(s)	177, 192
MaeII	ACGT	1 cut(s)	435
MaeIII	GTNAC	4 cut(s)	56, 137, 170, 425
MalI	GATC	7 cut(s)	37, 106, 167, 196, 297, 323, 370
MboI	GATC	7 cut(s)	35, 104, 165, 194, 295, 321, 368
MboII	GAAGA	4 cut(s)	70, 129, 243, 361
MflI	RGATCY	4 cut(s)	165, 194, 321, 368
MhlI	GDGCHC	1 cut(s)	157
MluCI	AATT	4 cut(s)	4, 199, 383, 400
MlyI	GAGTC	3 cut(s)	29, 205, 268
MmeI	TCCRAC	1 cut(s)	73
MnlI	CCTC	2 cut(s)	77, 86
MroI	TCCGGA	1 cut(s)	32
MseI	TTAA	1 cut(s)	420
MspI	CCGG	3 cut(s)	33, 54, 110
MspR9I	CCNGG	2 cut(s)	54, 150
MvaI	CCWGG	1 cut(s)	150
MvnI	CGCG	1 cut(s)	272
MwoI	GCNNNNNNNGC	1 cut(s)	371
NciI	CCSGG	1 cut(s)	54
NdeII	GATC	7 cut(s)	35, 104, 165, 194, 295, 321, 368
NlaIII	CATG	2 cut(s)	91, 145
NlaIV	GGNNCC	3 cut(s)	64, 65, 228
PcsI	WCGNNNNNNNCGW	1 cut(s)	281
PfeI	GAWTC	5 cut(s)	45, 96, 180, 339, 413
PflFI	GACNNNGTC	1 cut(s)	230
PkrI	GCNGC	2 cut(s)	271, 279
PleI	GAGTC	3 cut(s)	28, 205, 267
PpsI	GAGTC	3 cut(s)	28, 205, 267
PpuMI	RGGWCCY	1 cut(s)	63
PshBI	ATTAAT	1 cut(s)	420
Psp5II	RGGWCCY	1 cut(s)	63
Psp6I	CCWGG	1 cut(s)	148
PspGI	CCWGG	1 cut(s)	148
PspN4I	GGNNCC	3 cut(s)	64, 65, 228
PspPI	GGNCC	4 cut(s)	63, 226, 329, 359
PspPPI	RGGWCCY	1 cut(s)	63
PsuI	RGATCY	4 cut(s)	165, 194, 321, 368
PsyI	GACNNNGTC	1 cut(s)	230
RsaI	GTAC	1 cut(s)	438
RsaNI	GTAC	1 cut(s)	437
Rsr2I	CGGWCCG	1 cut(s)	329
RsrII	CGGWCCG	1 cut(s)	329
SalI	GTCGAC	1 cut(s)	233
SaqAI	TTAA	1 cut(s)	420
SatI	GCNGC	2 cut(s)	270, 278
Sau3AI	GATC	7 cut(s)	35, 104, 165, 194, 295, 321, 368
Sau96I	GGNCC	4 cut(s)	63, 226, 329, 359
SchI	GAGTC	3 cut(s)	29, 205, 268
ScrFI	CCNGG	2 cut(s)	54, 150
SduI	GDGCHC	1 cut(s)	157
SetI	ASST	1 cut(s)	438
SfaNI	GCATC	1 cut(s)	291
SgrAI	CRCCGGYG	1 cut(s)	109
SinI	GGWCC	3 cut(s)	63, 226, 329
SmlI	CTYRAG	1 cut(s)	313
SmoI	CTYRAG	1 cut(s)	313
Sse9I	AATT	4 cut(s)	4, 199, 383, 400
SsiI	CCGC	3 cut(s)	239, 270, 278
SspMI	CTAG	2 cut(s)	177, 192
StyD4I	CCNGG	2 cut(s)	52, 148
TaaI	ACNGT	2 cut(s)	128, 329
TaiI	ACGT	1 cut(s)	438
TaqI	TCGA	4 cut(s)	18, 234, 337, 411
TasI	AATT	4 cut(s)	4, 199, 383, 400
TauI	GCSGC	2 cut(s)	272, 280
TfiI	GAWTC	5 cut(s)	45, 96, 180, 339, 413
Tru1I	TTAA	1 cut(s)	420
Tru9I	TTAA	1 cut(s)	420
TspDTI	ATGAA	4 cut(s)	17, 104, 158, 234
TspGWI	ACGGA	3 cut(s)	18, 158, 321
Tth111I	GACNNNGTC	1 cut(s)	230
VpaK11BI	GGWCC	3 cut(s)	63, 226, 329
VspI	ATTAAT	1 cut(s)	420
XapI	RAATTY	1 cut(s)	400
XmiI	GTMKAC	1 cut(s)	234
XspI	CTAG	2 cut(s)	177, 192

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.